RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 PAPPAQ13219 1627 aa13.03□□□□□ -0.32
HDAC9-228ENST00000524023 CCT2P78371 535 aaKnown RBP13.03□□□□□ -0.32
HDAC9-228ENST00000524023 TDRD7Q8NHU6 1098 aaKnown RBP13.03□□□□□ -0.32
HDAC9-228ENST00000524023 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.03□□□□□ -0.32
HDAC9-228ENST00000524023 PUS3Q9BZE2 481 aaKnown RBP13.03□□□□□ -0.32
HDAC9-228ENST00000524023 RCOR1Q9UKL0 485 aa13.03□□□□□ -0.32
HDAC9-228ENST00000524023 WDR17Q8IZU2 1322 aa13.03□□□□□ -0.32
HDAC9-228ENST00000524023 KIF3AQ9Y496 699 aa13.03□□□□□ -0.32
HDAC9-228ENST00000524023 SALL1Q9NSC2 1324 aa13.02□□□□□ -0.32
HDAC9-228ENST00000524023 M0R2C6 588 aa13.02□□□□□ -0.33
HDAC9-228ENST00000524023 ZNF165P49910 485 aa13.02□□□□□ -0.33
HDAC9-228ENST00000524023 FOSBP53539 338 aa13.02□□□□□ -0.33
HDAC9-228ENST00000524023 CEBPZQ03701 1054 aaKnown RBP13.02□□□□□ -0.33
HDAC9-228ENST00000524023 NKX1-1Q15270 411 aaPredicted RBP13.02□□□□□ -0.33
HDAC9-228ENST00000524023 TOM1L2Q6ZVM7 507 aa13.02□□□□□ -0.33
HDAC9-228ENST00000524023 ZNF274Q96GC6 653 aaPredicted RBP13.02□□□□□ -0.33
HDAC9-228ENST00000524023 DNAJC25Q9H1X3 360 aa13.02□□□□□ -0.33
HDAC9-228ENST00000524023 PTGS1P23219 599 aa13.01□□□□□ -0.33
HDAC9-228ENST00000524023 PDIA3P30101 505 aaKnown RBP13.01□□□□□ -0.33
HDAC9-228ENST00000524023 GTF2F1P35269 517 aaKnown RBP eCLIP13.01□□□□□ -0.33
HDAC9-228ENST00000524023 MTERF4Q7Z6M4 381 aaKnown RBP13.01□□□□□ -0.33
HDAC9-228ENST00000524023 PLA2G4DQ86XP0 818 aa13.01□□□□□ -0.33
HDAC9-228ENST00000524023 NCOA5Q9HCD5 579 aaKnown RBP13.01□□□□□ -0.33
HDAC9-228ENST00000524023 CEP126Q9P2H0 1117 aa13.01□□□□□ -0.33
HDAC9-228ENST00000524023 CAVIN2O95810 425 aa13.01□□□□□ -0.33
HDAC9-228ENST00000524023 ZNF75DP51815 510 aa13.01□□□□□ -0.33
HDAC9-228ENST00000524023 ATL3Q6DD88 541 aa13.01□□□□□ -0.33
HDAC9-228ENST00000524023 CHST3Q7LGC8 479 aa13.01□□□□□ -0.33
HDAC9-228ENST00000524023 OSBP2Q969R2 916 aa13.01□□□□□ -0.33
HDAC9-228ENST00000524023 ISCA1Q9BUE6 129 aa13.01□□□□□ -0.33
HDAC9-228ENST00000524023 FTOQ9C0B1 505 aaKnown RBP eCLIP13.01□□□□□ -0.33
HDAC9-228ENST00000524023 NWD2Q9ULI1 1742 aa13□□□□□ -0.33
HDAC9-228ENST00000524023 TTLL5Q6EMB2 1281 aa13□□□□□ -0.33
HDAC9-228ENST00000524023 CCDC186Q7Z3E2 898 aa13□□□□□ -0.33
HDAC9-228ENST00000524023 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13□□□□□ -0.33
HDAC9-228ENST00000524023 CCAR1Q8IX12 1150 aaKnown RBP13□□□□□ -0.33
HDAC9-228ENST00000524023 FBXL16Q8N461 479 aa13□□□□□ -0.33
HDAC9-228ENST00000524023 USP28Q96RU2 1077 aa13□□□□□ -0.33
HDAC9-228ENST00000524023 TRIM5Q9C035 493 aa13□□□□□ -0.33
HDAC9-228ENST00000524023 PRDM11Q9NQV5 511 aa13□□□□□ -0.33
HDAC9-228ENST00000524023 NAP1L2Q9ULW6 460 aaPredicted RBP13□□□□□ -0.33
HDAC9-228ENST00000524023 TNS2Q63HR2 1409 aa13□□□□□ -0.33
HDAC9-228ENST00000524023 FKBP4Q02790 459 aaKnown RBP eCLIP13□□□□□ -0.33
HDAC9-228ENST00000524023 CCDC57Q2TAC2 916 aa13□□□□□ -0.33
HDAC9-228ENST00000524023 ZNF396Q96N95 335 aaPredicted RBP13□□□□□ -0.33
HDAC9-228ENST00000524023 SHANK3Q9BYB0 1731 aa12.99□□□□□ -0.33
HDAC9-228ENST00000524023 CARMIL3Q8ND23 1372 aa12.99□□□□□ -0.33
HDAC9-228ENST00000524023 CTAGE5O15320 804 aa12.99□□□□□ -0.33
HDAC9-228ENST00000524023 EVCP57679 992 aa12.99□□□□□ -0.33
HDAC9-228ENST00000524023 TCIRG1Q13488 830 aa12.99□□□□□ -0.33
HDAC9-228ENST00000524023 SNW1Q13573 536 aaKnown RBP12.99□□□□□ -0.33
HDAC9-228ENST00000524023 LRRFIP1Q32MZ4 808 aaKnown RBP12.99□□□□□ -0.33
HDAC9-228ENST00000524023 CCDC158Q5M9N0 1113 aa12.99□□□□□ -0.33
HDAC9-228ENST00000524023 TTC39AQ5SRH9 613 aa12.99□□□□□ -0.33
HDAC9-228ENST00000524023 ILDR1Q86SU0 546 aaPredicted RBP12.99□□□□□ -0.33
HDAC9-228ENST00000524023 DRC7Q8IY82 874 aa12.99□□□□□ -0.33
HDAC9-228ENST00000524023 CHMP4CQ96CF2 233 aa12.99□□□□□ -0.33
HDAC9-228ENST00000524023 GOLPH3LQ9H4A5 285 aa12.99□□□□□ -0.33
HDAC9-228ENST00000524023 FBXO3Q9UK99 471 aa12.99□□□□□ -0.33
HDAC9-228ENST00000524023 COL5A2P05997 1499 aaPredicted RBP12.99□□□□□ -0.33
HDAC9-228ENST00000524023 FOXP2O15409 715 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 PPFIA3O75145 1194 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 ADORA1P30542 326 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 IQCB1Q15051 598 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 XAGE2Q96GT9 111 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 NRBP1Q9UHY1 535 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 CTNNA3Q9UI47 895 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 AKAP2Q9Y2D5 859 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 ZFYP08048 801 aaPredicted RBP12.98□□□□□ -0.33
HDAC9-228ENST00000524023 FDPSP14324 419 aaKnown RBP12.98□□□□□ -0.33
HDAC9-228ENST00000524023 IL2RBP14784 551 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 GUCY1B3Q02153 619 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 GORABQ5T7V8 394 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 CCDC73Q6ZRK6 1079 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 ENGASEQ8NFI3 743 aa12.98□□□□□ -0.33
HDAC9-228ENST00000524023 TRIM28Q13263 835 aaKnown RBP12.97□□□□□ -0.33
HDAC9-228ENST00000524023 STX1AQ16623 288 aa12.97□□□□□ -0.33
HDAC9-228ENST00000524023 WASHC4Q2M389 1173 aa12.97□□□□□ -0.33
HDAC9-228ENST00000524023 C11orf57Q6ZUT1 292 aaPredicted RBP12.97□□□□□ -0.33
HDAC9-228ENST00000524023 BRINP3Q76B58 766 aa12.97□□□□□ -0.33
HDAC9-228ENST00000524023 GPHNQ9NQX3 736 aaPredicted RBP12.97□□□□□ -0.33
HDAC9-228ENST00000524023 MYH7P12883 1935 aa12.97□□□□□ -0.33
HDAC9-228ENST00000524023 CDC25BP30305 580 aa12.97□□□□□ -0.33
HDAC9-228ENST00000524023 FAM160A1Q05DH4 1040 aa12.97□□□□□ -0.33
HDAC9-228ENST00000524023 LRMPQ12912 555 aa12.97□□□□□ -0.33
HDAC9-228ENST00000524023 IMMTQ16891 758 aaKnown RBP12.97□□□□□ -0.33
HDAC9-228ENST00000524023 VSIG10Q8N0Z9 540 aa12.97□□□□□ -0.33
HDAC9-228ENST00000524023 TSC1Q92574 1164 aa12.97□□□□□ -0.33
HDAC9-228ENST00000524023 CARD10Q9BWT7 1032 aa12.97□□□□□ -0.33
HDAC9-228ENST00000524023 KINO60870 393 aaKnown RBP12.96□□□□□ -0.33
HDAC9-228ENST00000524023 FGAP02671 866 aa12.96□□□□□ -0.33
HDAC9-228ENST00000524023 PCCAP05165 728 aaPredicted RBP12.96□□□□□ -0.33
HDAC9-228ENST00000524023 ME1P48163 572 aa12.96□□□□□ -0.33
HDAC9-228ENST00000524023 HAND2P61296 217 aa12.96□□□□□ -0.33
HDAC9-228ENST00000524023 SCARF1Q14162 830 aa12.96□□□□□ -0.33
HDAC9-228ENST00000524023 ZSCAN25Q6NSZ9 544 aa12.96□□□□□ -0.33
HDAC9-228ENST00000524023 SARM1Q6SZW1 724 aa12.96□□□□□ -0.33
HDAC9-228ENST00000524023 PLA2G12BQ9BX93 195 aa12.96□□□□□ -0.33
HDAC9-228ENST00000524023 CLIP2Q9UDT6 1046 aa12.96□□□□□ -0.33
HDAC9-228ENST00000524023 GOLGA6L19H0YKK7 550 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms