RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 FZD1Q9UP38 647 aa18.29■□□□□ 0.52
NKX3-1-202ENST00000523261 ZNF646O15015 1829 aaPredicted RBP18.28■□□□□ 0.52
NKX3-1-202ENST00000523261 PODNQ7Z5L7 613 aa18.28■□□□□ 0.52
NKX3-1-202ENST00000523261 NBPF11Q86T75 865 aa18.28■□□□□ 0.52
NKX3-1-202ENST00000523261 CLMNQ96JQ2 1002 aa18.28■□□□□ 0.52
NKX3-1-202ENST00000523261 PTCH2Q9Y6C5 1203 aa18.28■□□□□ 0.52
NKX3-1-202ENST00000523261 SASH1O94885 1247 aa18.27■□□□□ 0.52
NKX3-1-202ENST00000523261 MAP3K11Q16584 847 aa18.27■□□□□ 0.52
NKX3-1-202ENST00000523261 ISCA1Q9BUE6 129 aa18.27■□□□□ 0.52
NKX3-1-202ENST00000523261 APOBEC3FQ8IUX4 373 aaKnown RBP18.26■□□□□ 0.51
NKX3-1-202ENST00000523261 OGFOD1Q8N543 542 aa18.26■□□□□ 0.51
NKX3-1-202ENST00000523261 MXD3Q9BW11 206 aa18.26■□□□□ 0.51
NKX3-1-202ENST00000523261 SEC31BQ9NQW1 1179 aa18.26■□□□□ 0.51
NKX3-1-202ENST00000523261 RTL5Q5HYW3 569 aaPredicted RBP18.25■□□□□ 0.51
NKX3-1-202ENST00000523261 DACT2Q5SW24 774 aa18.25■□□□□ 0.51
NKX3-1-202ENST00000523261 OTUD7BQ6GQQ9 843 aa18.25■□□□□ 0.51
NKX3-1-202ENST00000523261 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.25■□□□□ 0.51
NKX3-1-202ENST00000523261 TSPYL4Q9UJ04 414 aa18.25■□□□□ 0.51
NKX3-1-202ENST00000523261 IRS4O14654 1257 aaPredicted RBP18.24■□□□□ 0.51
NKX3-1-202ENST00000523261 MYCP01106 439 aaPredicted RBP18.24■□□□□ 0.51
NKX3-1-202ENST00000523261 PTPN18Q99952 460 aa18.24■□□□□ 0.51
NKX3-1-202ENST00000523261 SSC5DA1L4H1 1573 aa18.24■□□□□ 0.51
NKX3-1-202ENST00000523261 WTIPA6NIX2 430 aaPredicted RBP18.23■□□□□ 0.51
NKX3-1-202ENST00000523261 ATP5J2-PTCD1G3V325 749 aa18.23■□□□□ 0.51
NKX3-1-202ENST00000523261 GJA5P36382 358 aa18.23■□□□□ 0.51
NKX3-1-202ENST00000523261 NFE2L2Q16236 605 aa18.23■□□□□ 0.51
NKX3-1-202ENST00000523261 DPF3Q92784 378 aa18.23■□□□□ 0.51
NKX3-1-202ENST00000523261 ZBED3Q96IU2 234 aaPredicted RBP18.23■□□□□ 0.51
NKX3-1-202ENST00000523261 LAMA3Q16787 3333 aa18.23■□□□□ 0.51
NKX3-1-202ENST00000523261 XDHP47989 1333 aa18.23■□□□□ 0.51
NKX3-1-202ENST00000523261 CLSPNQ9HAW4 1339 aa18.23■□□□□ 0.51
NKX3-1-202ENST00000523261 COL1A1P02452 1464 aaPredicted RBP18.22■□□□□ 0.51
NKX3-1-202ENST00000523261 TESPA1A2RU30 521 aaPredicted RBP18.22■□□□□ 0.51
NKX3-1-202ENST00000523261 PLBD2Q8NHP8 589 aa18.22■□□□□ 0.51
NKX3-1-202ENST00000523261 MYO3BQ8WXR4 1341 aa18.22■□□□□ 0.51
NKX3-1-202ENST00000523261 UNCXA6NJT0 531 aa18.21■□□□□ 0.51
NKX3-1-202ENST00000523261 SOX1O00570 391 aaPredicted RBP18.21■□□□□ 0.51
NKX3-1-202ENST00000523261 PPP2R1AP30153 589 aa18.21■□□□□ 0.51
NKX3-1-202ENST00000523261 ARHGEF6Q15052 776 aa18.21■□□□□ 0.51
NKX3-1-202ENST00000523261 SHISA4Q96DD7 197 aa18.21■□□□□ 0.51
NKX3-1-202ENST00000523261 NEFMP07197 916 aa18.2■□□□□ 0.5
NKX3-1-202ENST00000523261 ATP2B4P23634 1241 aa18.2■□□□□ 0.5
NKX3-1-202ENST00000523261 MMP14P50281 582 aa18.2■□□□□ 0.5
NKX3-1-202ENST00000523261 STRIP1Q5VSL9 837 aa18.2■□□□□ 0.5
NKX3-1-202ENST00000523261 SH3TC2Q8TF17 1288 aa18.2■□□□□ 0.5
NKX3-1-202ENST00000523261 PLEKHF1Q96S99 279 aa18.2■□□□□ 0.5
NKX3-1-202ENST00000523261 DEFB129Q9H1M3 183 aa18.2■□□□□ 0.5
NKX3-1-202ENST00000523261 MED23Q9ULK4 1368 aa18.19■□□□□ 0.5
NKX3-1-202ENST00000523261 PPP1R12BO60237 982 aaPredicted RBP18.19■□□□□ 0.5
NKX3-1-202ENST00000523261 ANKRD13DQ6ZTN6 518 aa18.19■□□□□ 0.5
NKX3-1-202ENST00000523261 A0A1W2PPC1 479 aa18.18■□□□□ 0.5
NKX3-1-202ENST00000523261 TRIM28Q13263 835 aaKnown RBP18.18■□□□□ 0.5
NKX3-1-202ENST00000523261 FBXW7Q969H0 707 aa18.18■□□□□ 0.5
NKX3-1-202ENST00000523261 LRCH3Q96II8 777 aa18.18■□□□□ 0.5
NKX3-1-202ENST00000523261 UBE2Q1Q7Z7E8 422 aa18.17■□□□□ 0.5
NKX3-1-202ENST00000523261 CHPF2Q9P2E5 772 aa18.17■□□□□ 0.5
NKX3-1-202ENST00000523261 ZSWIM8A7E2V4 1837 aa18.16■□□□□ 0.5
NKX3-1-202ENST00000523261 CCDC152Q4G0S7 254 aa18.16■□□□□ 0.5
NKX3-1-202ENST00000523261 KIAA0825Q8IV33 1275 aa18.16■□□□□ 0.5
NKX3-1-202ENST00000523261 MS4A4AQ96JQ5 239 aa18.16■□□□□ 0.5
NKX3-1-202ENST00000523261 BABAM1Q9NWV8 329 aa18.16■□□□□ 0.5
NKX3-1-202ENST00000523261 ZBTB7BO15156 539 aaPredicted RBP18.15■□□□□ 0.5
NKX3-1-202ENST00000523261 ZBTB38Q8NAP3 1195 aaPredicted RBP18.15■□□□□ 0.5
NKX3-1-202ENST00000523261 PPP2R3BQ9Y5P8 575 aa18.15■□□□□ 0.5
NKX3-1-202ENST00000523261 NR2E3Q9Y5X4 410 aa18.15■□□□□ 0.5
NKX3-1-202ENST00000523261 USP2O75604 605 aaPredicted RBP18.14■□□□□ 0.49
NKX3-1-202ENST00000523261 IREB2P48200 963 aaKnown RBP18.14■□□□□ 0.49
NKX3-1-202ENST00000523261 MTFR1Q15390 333 aa18.14■□□□□ 0.49
NKX3-1-202ENST00000523261 TAF1CQ15572 869 aaPredicted RBP18.14■□□□□ 0.49
NKX3-1-202ENST00000523261 ANKRD18AQ8IVF6 992 aa18.14■□□□□ 0.49
NKX3-1-202ENST00000523261 ANKRD13AQ8IZ07 590 aa18.14■□□□□ 0.49
NKX3-1-202ENST00000523261 BRI3BPQ8WY22 251 aa18.14■□□□□ 0.49
NKX3-1-202ENST00000523261 HTATIP2Q9BUP3 242 aa18.14■□□□□ 0.49
NKX3-1-202ENST00000523261 ARHGAP39Q9C0H5 1083 aa18.14■□□□□ 0.49
NKX3-1-202ENST00000523261 COA1Q9GZY4 146 aa18.14■□□□□ 0.49
NKX3-1-202ENST00000523261 ZFYVE28Q9HCC9 887 aa18.14■□□□□ 0.49
NKX3-1-202ENST00000523261 UNC80Q8N2C7 3258 aa18.14■□□□□ 0.49
NKX3-1-202ENST00000523261 OTOFQ9HC10 1997 aa18.13■□□□□ 0.49
NKX3-1-202ENST00000523261 HSP90B1P14625 803 aaKnown RBP18.13■□□□□ 0.49
NKX3-1-202ENST00000523261 KRT24Q2M2I5 525 aa18.13■□□□□ 0.49
NKX3-1-202ENST00000523261 SUPT20HL1Q3ZLR7 823 aa18.13■□□□□ 0.49
NKX3-1-202ENST00000523261 NBPF12Q5TAG4 269 aaPredicted RBP18.13■□□□□ 0.49
NKX3-1-202ENST00000523261 CCDC85AQ96PX6 553 aaPredicted RBP18.13■□□□□ 0.49
NKX3-1-202ENST00000523261 COL25A1Q9BXS0 654 aaPredicted RBP18.13■□□□□ 0.49
NKX3-1-202ENST00000523261 ECM29Q5VYK3 1845 aa18.13■□□□□ 0.49
NKX3-1-202ENST00000523261 ZNF804BA4D1E1 1349 aa18.13■□□□□ 0.49
NKX3-1-202ENST00000523261 TTLL5Q6EMB2 1281 aa18.12■□□□□ 0.49
NKX3-1-202ENST00000523261 TXNRD3Q86VQ6 643 aa18.12■□□□□ 0.49
NKX3-1-202ENST00000523261 OPTNQ96CV9 577 aa18.12■□□□□ 0.49
NKX3-1-202ENST00000523261 PDE8AO60658 829 aa18.11■□□□□ 0.49
NKX3-1-202ENST00000523261 DLGAP5Q15398 846 aa18.11■□□□□ 0.49
NKX3-1-202ENST00000523261 MTMR14Q8NCE2 650 aa18.11■□□□□ 0.49
NKX3-1-202ENST00000523261 NKX2-3Q8TAU0 364 aa18.11■□□□□ 0.49
NKX3-1-202ENST00000523261 ELP3Q9H9T3 547 aa18.11■□□□□ 0.49
NKX3-1-202ENST00000523261 MINPP1Q9UNW1 487 aa18.11■□□□□ 0.49
NKX3-1-202ENST00000523261 CCL15-CCL14A0A0B4J2E2 113 aa18.1■□□□□ 0.49
NKX3-1-202ENST00000523261 GJA8P48165 433 aa18.1■□□□□ 0.49
NKX3-1-202ENST00000523261 CCT4P50991 539 aaKnown RBP18.1■□□□□ 0.49
NKX3-1-202ENST00000523261 LACTBP83111 547 aaPredicted RBP18.1■□□□□ 0.49
NKX3-1-202ENST00000523261 CCL15Q16663 113 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms