RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TERF1P54274 439 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 STX17P56962 302 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 GNG11P61952 73 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 KCNG4Q8TDN1 519 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 MYL10Q9BUA6 226 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 PRDM15P57071 1507 aaPredicted RBP13.47□□□□□ -0.25
SYNPO-204ENST00000519664 RTN1Q16799 776 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 TSC1Q92574 1164 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 TRERF1Q96PN7 1200 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 SLC52A2Q9HAB3 445 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 BMP2KQ9NSY1 1161 aaPredicted RBP13.47□□□□□ -0.25
SYNPO-204ENST00000519664 ZSCAN12O43309 604 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 KIF20AO95235 890 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 UQCRFS1P1P0C7P4 283 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 BEND3Q5T5X7 828 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 GPT2Q8TD30 523 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 PRIMPOLQ96LW4 560 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 ZNF853P0CG23 659 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 DNAI1Q9UI46 699 aa13.47□□□□□ -0.25
SYNPO-204ENST00000519664 UBA7P41226 1012 aa13.46□□□□□ -0.25
SYNPO-204ENST00000519664 ZNF445P59923 1031 aa13.46□□□□□ -0.25
SYNPO-204ENST00000519664 CCDC24Q8N4L8 307 aa13.46□□□□□ -0.25
SYNPO-204ENST00000519664 SEC63Q9UGP8 760 aaKnown RBP13.46□□□□□ -0.25
SYNPO-204ENST00000519664 MYO5CQ9NQX4 1742 aa13.46□□□□□ -0.25
SYNPO-204ENST00000519664 TAF5LO75529 589 aa13.46□□□□□ -0.26
SYNPO-204ENST00000519664 CCDC152Q4G0S7 254 aa13.46□□□□□ -0.26
SYNPO-204ENST00000519664 SPECC1Q5M775 1068 aa13.46□□□□□ -0.26
SYNPO-204ENST00000519664 NBPF5PQ86XG9 351 aaPredicted RBP13.46□□□□□ -0.26
SYNPO-204ENST00000519664 DNAJC10Q8IXB1 793 aa13.46□□□□□ -0.26
SYNPO-204ENST00000519664 PLBD2Q8NHP8 589 aa13.46□□□□□ -0.26
SYNPO-204ENST00000519664 IFNKQ9P0W0 207 aa13.46□□□□□ -0.26
SYNPO-204ENST00000519664 PRDM1O75626 825 aa13.46□□□□□ -0.26
SYNPO-204ENST00000519664 GSDMDP57764 484 aa13.46□□□□□ -0.26
SYNPO-204ENST00000519664 TLR7Q9NYK1 1049 aaKnown RBP13.46□□□□□ -0.26
SYNPO-204ENST00000519664 NEURL1BA8MQ27 555 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 TTLL7Q6ZT98 887 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 DHX58Q96C10 678 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 XAGE2Q96GT9 111 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 SEPT11Q9NVA2 429 aaKnown RBP13.45□□□□□ -0.26
SYNPO-204ENST00000519664 HOXB7P09629 217 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 UBA5Q9GZZ9 404 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 BTG4Q9NY30 223 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 N4BP3O15049 544 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 KIF5CO60282 957 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 ITGA6P23229 1130 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 ZNF76P36508 570 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 CCDC96Q2M329 555 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 HS1BP3Q53T59 392 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 IFIT1BQ5T764 474 aaKnown RBP13.45□□□□□ -0.26
SYNPO-204ENST00000519664 ANKRD18AQ8IVF6 992 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 KBTBD3Q8NAB2 608 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 ROBO2Q9HCK4 1378 aa13.45□□□□□ -0.26
SYNPO-204ENST00000519664 F8W031 263 aaPredicted RBP13.44□□□□□ -0.26
SYNPO-204ENST00000519664 CASQ1P31415 396 aa13.44□□□□□ -0.26
SYNPO-204ENST00000519664 CRACR2BQ8N4Y2 399 aaPredicted RBP13.44□□□□□ -0.26
SYNPO-204ENST00000519664 LEO1Q8WVC0 666 aaPredicted RBP13.44□□□□□ -0.26
SYNPO-204ENST00000519664 TPCN1Q9ULQ1 816 aa13.44□□□□□ -0.26
SYNPO-204ENST00000519664 KIF2AO00139 706 aaPredicted RBP13.44□□□□□ -0.26
SYNPO-204ENST00000519664 MBD4O95243 580 aa13.44□□□□□ -0.26
SYNPO-204ENST00000519664 NAA16Q6N069 864 aaPredicted RBP13.44□□□□□ -0.26
SYNPO-204ENST00000519664 ESR2Q92731 530 aa13.44□□□□□ -0.26
SYNPO-204ENST00000519664 PHKBQ93100 1093 aa13.44□□□□□ -0.26
SYNPO-204ENST00000519664 CAVIN2O95810 425 aa13.44□□□□□ -0.26
SYNPO-204ENST00000519664 NEMFO60524 1076 aa13.44□□□□□ -0.26
SYNPO-204ENST00000519664 LIG1P18858 919 aa13.44□□□□□ -0.26
SYNPO-204ENST00000519664 CALRP27797 417 aaKnown RBP13.44□□□□□ -0.26
SYNPO-204ENST00000519664 KAT14Q9H8E8 782 aa13.44□□□□□ -0.26
SYNPO-204ENST00000519664 GPAA1O43292 621 aa13.43□□□□□ -0.26
SYNPO-204ENST00000519664 PLIN2Q99541 437 aa13.43□□□□□ -0.26
SYNPO-204ENST00000519664 hCG_1642624A0A1W2PR95 340 aa13.43□□□□□ -0.26
SYNPO-204ENST00000519664 ZAP70P43403 619 aa13.43□□□□□ -0.26
SYNPO-204ENST00000519664 DDB1Q16531 1140 aa13.43□□□□□ -0.26
SYNPO-204ENST00000519664 BABAM1Q9NWV8 329 aa13.43□□□□□ -0.26
SYNPO-204ENST00000519664 ERLIN1O75477 346 aa13.43□□□□□ -0.26
SYNPO-204ENST00000519664 CCDC12Q8WUD4 166 aaPredicted RBP13.43□□□□□ -0.26
SYNPO-204ENST00000519664 IBTKQ9P2D0 1353 aaPredicted RBP13.42□□□□□ -0.26
SYNPO-204ENST00000519664 PDE4BQ07343 736 aa13.42□□□□□ -0.26
SYNPO-204ENST00000519664 RPGRQ92834 1020 aaKnown RBP13.42□□□□□ -0.26
SYNPO-204ENST00000519664 TIGD1Q96MW7 591 aa13.42□□□□□ -0.26
SYNPO-204ENST00000519664 SYNMO15061 1565 aa13.42□□□□□ -0.26
SYNPO-204ENST00000519664 ODF2Q5BJF6 829 aa13.42□□□□□ -0.26
SYNPO-204ENST00000519664 LEKR1Q6ZMV7 388 aa13.42□□□□□ -0.26
SYNPO-204ENST00000519664 KRT23Q9C075 422 aa13.42□□□□□ -0.26
SYNPO-204ENST00000519664 MTIF2P46199 727 aaKnown RBP13.42□□□□□ -0.26
SYNPO-204ENST00000519664 ARMT1Q9H993 441 aa13.42□□□□□ -0.26
SYNPO-204ENST00000519664 CACNA2D4Q7Z3S7 1137 aa13.42□□□□□ -0.26
SYNPO-204ENST00000519664 CBX8Q9HC52 389 aa13.42□□□□□ -0.26
SYNPO-204ENST00000519664 LRRC24Q50LG9 513 aa13.41□□□□□ -0.26
SYNPO-204ENST00000519664 RRAGBQ5VZM2 374 aa13.41□□□□□ -0.26
SYNPO-204ENST00000519664 DHX37Q8IY37 1157 aaKnown RBP13.41□□□□□ -0.26
SYNPO-204ENST00000519664 SETD1BQ9UPS6 1966 aaKnown RBP13.41□□□□□ -0.26
SYNPO-204ENST00000519664 H0YHG0 523 aa13.41□□□□□ -0.26
SYNPO-204ENST00000519664 TDRD12Q587J7 1177 aaKnown RBP13.41□□□□□ -0.26
SYNPO-204ENST00000519664 UTP14AQ9BVJ6 771 aaKnown RBP13.41□□□□□ -0.26
SYNPO-204ENST00000519664 NSFL1CQ9UNZ2 370 aaKnown RBP13.41□□□□□ -0.26
SYNPO-204ENST00000519664 NLRP3Q96P20 1036 aa13.41□□□□□ -0.26
SYNPO-204ENST00000519664 ZNF287Q9HBT7 754 aa13.41□□□□□ -0.26
SYNPO-204ENST00000519664 TCP11L1Q9NUJ3 509 aa13.41□□□□□ -0.26
SYNPO-204ENST00000519664 MTMR6Q9Y217 621 aa13.41□□□□□ -0.26
SYNPO-204ENST00000519664 ARHGEF10O15013 1369 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms