RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PARP2Q9UGN5 583 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 AKR1B15C9JRZ8 316 aaPredicted RBP12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 GOLGA8KD6RF30 607 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 NEK11Q8NG66 645 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 CAPZA3Q96KX2 299 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 ATP6V0A2Q9Y487 856 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 WDHD1O75717 1129 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 MAP3K7CLP57077 242 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 PPP1R7Q15435 360 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 TSR2Q969E8 191 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 TMX3Q96JJ7 454 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 CEP104O60308 925 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 F13A1P00488 732 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 COG7P83436 770 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 SNCBQ16143 134 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 RNF8O76064 485 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 PRIM1P49642 420 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 ZC3H6P61129 1189 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 STAG1Q8WVM7 1258 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 ZNF830Q96NB3 372 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 NEK1Q96PY6 1258 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 DACT1Q9NYF0 836 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 PTGS1P23219 599 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 OAS2P29728 719 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 PDCD2Q16342 344 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 USP48Q86UV5 1035 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 IL1RAPL2Q9NP60 686 aa12.64□□□□□ -0.39
LIMCH1-217ENST00000512946 IFIT3O14879 490 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 USP5P45974 858 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 ARMC9Q7Z3E5 817 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 SYCP3Q8IZU3 236 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 PUF60Q9UHX1 559 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 UTP11Q9Y3A2 253 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 TROVE2P10155 538 aaKnown RBP eCLIP12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 TBC1D9Q6ZT07 1266 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 HOMER3Q9NSC5 361 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 SEPT10Q9P0V9 454 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 PPP1R9AQ9ULJ8 1098 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 GUCA1BQ9UMX6 200 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 PTPRCP08575 1304 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 RNASELQ05823 741 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 NFE2L2Q16236 605 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 RILPL1Q5EBL4 403 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 DUSP27Q5VZP5 1158 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 SLF2Q8IX21 1173 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 RASEFQ8IZ41 740 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 EPSTI1Q96J88 318 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 TACO1Q9BSH4 297 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 NUP58Q9BVL2 599 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 DRC3Q9H069 523 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 ECHDC1Q9NTX5 307 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 RIOK3O14730 519 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 ARHGAP6O43182 974 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 IFIT1P09914 478 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 GNAQP50148 359 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 MYL5Q02045 173 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 DNAJC25Q9H1X3 360 aa12.63□□□□□ -0.39
LIMCH1-217ENST00000512946 I3L4J1 428 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 RARSP54136 660 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 CCDC122Q5T0U0 273 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 MAIP1Q8WWC4 291 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 PANK2Q9BZ23 570 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 CAPN7Q9Y6W3 813 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 NUTM2FA1L443 756 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 KIF1CO43896 1103 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 IDH1O75874 414 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 BRAPQ7Z569 592 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 NCOA7Q8NI08 942 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 CCT6BQ92526 530 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 NLRP2Q9NX02 1062 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 TMOD2Q9NZR1 351 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 KLHL14Q9P2G3 628 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 CCDC88BA6NC98 1476 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 A0A087WUV0 522 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 TATP17735 454 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 DMTNQ08495 405 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 HDAC1Q13547 482 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 CCDC170Q8IYT3 715 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 GDPD2Q9HCC8 539 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 SMIM24O75264 130 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 ERCC5P28715 1186 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 IGHMBP2P38935 993 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 MKNK2Q9HBH9 465 aa12.62□□□□□ -0.39
LIMCH1-217ENST00000512946 RTL1A6NKG5 1358 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 HSPA1LP34931 641 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 ZNF445P59923 1031 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 SATB1Q01826 763 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 TMTC1Q8IUR5 882 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 FHOD3Q2V2M9 1422 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 HHATQ5VTY9 493 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 SRGAP1Q7Z6B7 1085 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 TXNDC9O14530 226 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 GAS8O95995 478 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 STAT6P42226 847 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 CYP26C1Q6V0L0 522 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 GSDMBQ8TAX9 411 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 FAM71BQ8TC56 605 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 P3H4Q92791 437 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 IMPG2Q9BZV3 1241 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms