RNA–Protein interactions for RNA: ENST00000509995.5

SNF8-207, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 3

Gene SNF8, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-207ENST00000509995 PTPN18Q99952 460 aa14.37□□□□□ -0.11
SNF8-207ENST00000509995 COL1A1P02452 1464 aaPredicted RBP14.37□□□□□ -0.11
SNF8-207ENST00000509995 SSC5DA1L4H1 1573 aa14.36□□□□□ -0.11
SNF8-207ENST00000509995 UFL1O94874 794 aa14.36□□□□□ -0.11
SNF8-207ENST00000509995 MAP3K11Q16584 847 aa14.36□□□□□ -0.11
SNF8-207ENST00000509995 LRP10Q7Z4F1 713 aa14.36□□□□□ -0.11
SNF8-207ENST00000509995 APOBEC3FQ8IUX4 373 aaKnown RBP14.36□□□□□ -0.11
SNF8-207ENST00000509995 MTMR10Q9NXD2 777 aa14.36□□□□□ -0.11
SNF8-207ENST00000509995 PODXL2Q9NZ53 605 aa14.36□□□□□ -0.11
SNF8-207ENST00000509995 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.36□□□□□ -0.11
SNF8-207ENST00000509995 OTOFQ9HC10 1997 aa14.36□□□□□ -0.11
SNF8-207ENST00000509995 LAMA2P24043 3122 aaKnown RBP14.35□□□□□ -0.11
SNF8-207ENST00000509995 USP17L3A6NCW0 530 aa14.35□□□□□ -0.11
SNF8-207ENST00000509995 USP17L4A6NCW7 530 aa14.35□□□□□ -0.11
SNF8-207ENST00000509995 HSP90AB3PQ58FF7 597 aa14.35□□□□□ -0.11
SNF8-207ENST00000509995 USP17L1Q7RTZ2 530 aa14.35□□□□□ -0.11
SNF8-207ENST00000509995 NKX2-3Q8TAU0 364 aa14.35□□□□□ -0.11
SNF8-207ENST00000509995 TTC28Q96AY4 2481 aa14.35□□□□□ -0.11
SNF8-207ENST00000509995 TESPA1A2RU30 521 aaPredicted RBP14.34□□□□□ -0.11
SNF8-207ENST00000509995 SASH1O94885 1247 aa14.34□□□□□ -0.11
SNF8-207ENST00000509995 GJA5P36382 358 aa14.34□□□□□ -0.11
SNF8-207ENST00000509995 EIF4A1P60842 406 aaKnown RBP14.34□□□□□ -0.11
SNF8-207ENST00000509995 MTFR1Q15390 333 aa14.34□□□□□ -0.11
SNF8-207ENST00000509995 OGFOD1Q8N543 542 aa14.34□□□□□ -0.11
SNF8-207ENST00000509995 STAP2Q9UGK3 403 aa14.34□□□□□ -0.11
SNF8-207ENST00000509995 ALPK3Q96L96 1907 aa14.34□□□□□ -0.11
SNF8-207ENST00000509995 HTATSF1O43719 755 aaKnown RBP14.33□□□□□ -0.12
SNF8-207ENST00000509995 GJA8P48165 433 aa14.33□□□□□ -0.12
SNF8-207ENST00000509995 SF3B3Q15393 1217 aaKnown RBP14.33□□□□□ -0.12
SNF8-207ENST00000509995 THUMPD2Q9BTF0 503 aaKnown RBP14.33□□□□□ -0.12
SNF8-207ENST00000509995 GGA1Q9UJY5 639 aa14.33□□□□□ -0.12
SNF8-207ENST00000509995 ECM29Q5VYK3 1845 aa14.33□□□□□ -0.12
SNF8-207ENST00000509995 UNCXA6NJT0 531 aa14.32□□□□□ -0.12
SNF8-207ENST00000509995 ANKIB1Q9P2G1 1089 aa14.32□□□□□ -0.12
SNF8-207ENST00000509995 DLG5Q8TDM6 1919 aa14.32□□□□□ -0.12
SNF8-207ENST00000509995 CDH23Q9H251 3354 aa14.31□□□□□ -0.12
SNF8-207ENST00000509995 PPP1R12BO60237 982 aaPredicted RBP14.31□□□□□ -0.12
SNF8-207ENST00000509995 EVI5O60447 810 aa14.31□□□□□ -0.12
SNF8-207ENST00000509995 RPS8P62241 208 aaKnown RBP14.31□□□□□ -0.12
SNF8-207ENST00000509995 TAF1CQ15572 869 aaPredicted RBP14.31□□□□□ -0.12
SNF8-207ENST00000509995 PODNQ7Z5L7 613 aa14.31□□□□□ -0.12
SNF8-207ENST00000509995 PNISRQ8TF01 805 aaKnown RBP14.31□□□□□ -0.12
SNF8-207ENST00000509995 ARHGAP39Q9C0H5 1083 aa14.31□□□□□ -0.12
SNF8-207ENST00000509995 FARP2O94887 1054 aaPredicted RBP14.3□□□□□ -0.12
SNF8-207ENST00000509995 GJB1P08034 283 aa14.3□□□□□ -0.12
SNF8-207ENST00000509995 COL9A1P20849 921 aa14.3□□□□□ -0.12
SNF8-207ENST00000509995 PDIA6Q15084 440 aa14.3□□□□□ -0.12
SNF8-207ENST00000509995 LRIT3Q3SXY7 679 aa14.3□□□□□ -0.12
SNF8-207ENST00000509995 MXD3Q9BW11 206 aa14.3□□□□□ -0.12
SNF8-207ENST00000509995 ZFYVE28Q9HCC9 887 aa14.3□□□□□ -0.12
SNF8-207ENST00000509995 GNRH1P01148 92 aa14.29□□□□□ -0.12
SNF8-207ENST00000509995 BMP8BP34820 402 aa14.29□□□□□ -0.12
SNF8-207ENST00000509995 PRMT2P55345 433 aa14.29□□□□□ -0.12
SNF8-207ENST00000509995 LACTBP83111 547 aaPredicted RBP14.29□□□□□ -0.12
SNF8-207ENST00000509995 PROSER3Q2NL68 480 aa14.29□□□□□ -0.12
SNF8-207ENST00000509995 DACT2Q5SW24 774 aa14.29□□□□□ -0.12
SNF8-207ENST00000509995 ZNF428Q96B54 188 aa14.29□□□□□ -0.12
SNF8-207ENST00000509995 GDF15Q99988 308 aa14.29□□□□□ -0.12
SNF8-207ENST00000509995 DEFB129Q9H1M3 183 aa14.29□□□□□ -0.12
SNF8-207ENST00000509995 MYO3BQ8WXR4 1341 aa14.29□□□□□ -0.12
SNF8-207ENST00000509995 ANXA1P04083 346 aa14.28□□□□□ -0.12
SNF8-207ENST00000509995 KIF22Q14807 665 aa14.28□□□□□ -0.12
SNF8-207ENST00000509995 CC2D1BQ5T0F9 858 aaKnown RBP14.28□□□□□ -0.12
SNF8-207ENST00000509995 RPTORQ8N122 1335 aa14.28□□□□□ -0.12
SNF8-207ENST00000509995 ZBED3Q96IU2 234 aaPredicted RBP14.28□□□□□ -0.12
SNF8-207ENST00000509995 MS4A4AQ96JQ5 239 aa14.28□□□□□ -0.12
SNF8-207ENST00000509995 CCL5P13501 91 aa14.27□□□□□ -0.13
SNF8-207ENST00000509995 IREB2P48200 963 aaKnown RBP14.27□□□□□ -0.13
SNF8-207ENST00000509995 MMP14P50281 582 aa14.27□□□□□ -0.13
SNF8-207ENST00000509995 BRI3BPQ8WY22 251 aa14.27□□□□□ -0.13
SNF8-207ENST00000509995 FAM89AQ96GI7 184 aa14.27□□□□□ -0.13
SNF8-207ENST00000509995 PPP2R3BQ9Y5P8 575 aa14.27□□□□□ -0.13
SNF8-207ENST00000509995 BCAMP50895 628 aa14.26□□□□□ -0.13
SNF8-207ENST00000509995 COPS6Q7L5N1 327 aa14.26□□□□□ -0.13
SNF8-207ENST00000509995 ANKRD13AQ8IZ07 590 aa14.26□□□□□ -0.13
SNF8-207ENST00000509995 U2AF1L4Q8WU68 220 aaKnown RBP14.26□□□□□ -0.13
SNF8-207ENST00000509995 OPTNQ96CV9 577 aa14.26□□□□□ -0.13
SNF8-207ENST00000509995 RNF208Q9H0X6 261 aa14.26□□□□□ -0.13
SNF8-207ENST00000509995 XDHP47989 1333 aa14.25□□□□□ -0.13
SNF8-207ENST00000509995 HSPA5P11021 654 aaKnown RBP14.25□□□□□ -0.13
SNF8-207ENST00000509995 GRK4P32298 578 aa14.25□□□□□ -0.13
SNF8-207ENST00000509995 AIMP1Q12904 312 aaKnown RBP14.25□□□□□ -0.13
SNF8-207ENST00000509995 STRIP1Q5VSL9 837 aa14.25□□□□□ -0.13
SNF8-207ENST00000509995 FAM43AQ8N2R8 423 aa14.25□□□□□ -0.13
SNF8-207ENST00000509995 XAGE3Q8WTP9 111 aa14.25□□□□□ -0.13
SNF8-207ENST00000509995 FBXW7Q969H0 707 aa14.25□□□□□ -0.13
SNF8-207ENST00000509995 MED23Q9ULK4 1368 aa14.24□□□□□ -0.13
SNF8-207ENST00000509995 CCL15-CCL14A0A0B4J2E2 113 aa14.24□□□□□ -0.13
SNF8-207ENST00000509995 TLR2O60603 784 aa14.24□□□□□ -0.13
SNF8-207ENST00000509995 EIF2S2P20042 333 aaKnown RBP14.24□□□□□ -0.13
SNF8-207ENST00000509995 PLA2G5P39877 138 aa14.24□□□□□ -0.13
SNF8-207ENST00000509995 EIF4G2P78344 907 aaKnown RBP eCLIP14.24□□□□□ -0.13
SNF8-207ENST00000509995 CCL15Q16663 113 aa14.24□□□□□ -0.13
SNF8-207ENST00000509995 SUPT20HL1Q3ZLR7 823 aa14.24□□□□□ -0.13
SNF8-207ENST00000509995 TDHQ8IZJ6 230 aa14.24□□□□□ -0.13
SNF8-207ENST00000509995 ELP3Q9H9T3 547 aa14.24□□□□□ -0.13
SNF8-207ENST00000509995 SEC31BQ9NQW1 1179 aa14.24□□□□□ -0.13
SNF8-207ENST00000509995 SRRDQ9UH36 339 aa14.24□□□□□ -0.13
SNF8-207ENST00000509995 RIPOR2Q9Y4F9 1068 aa14.24□□□□□ -0.13
SNF8-207ENST00000509995 ZNF804BA4D1E1 1349 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms