RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 SHANK3Q9BYB0 1731 aa19.33■□□□□ 0.68
COL6A1-206ENST00000498614 SPDYE4A6NLX3 237 aa19.33■□□□□ 0.68
COL6A1-206ENST00000498614 CTIFO43310 598 aaKnown RBP19.33■□□□□ 0.68
COL6A1-206ENST00000498614 HMG20BQ9P0W2 317 aa19.33■□□□□ 0.68
COL6A1-206ENST00000498614 NRBP1Q9UHY1 535 aa19.33■□□□□ 0.68
COL6A1-206ENST00000498614 ANKRD1Q15327 319 aa19.32■□□□□ 0.68
COL6A1-206ENST00000498614 SYTL4Q96C24 671 aaPredicted RBP19.32■□□□□ 0.68
COL6A1-206ENST00000498614 GJD4Q96KN9 370 aaPredicted RBP19.32■□□□□ 0.68
COL6A1-206ENST00000498614 NEUROD6Q96NK8 337 aa19.32■□□□□ 0.68
COL6A1-206ENST00000498614 HAUS7Q99871 368 aa19.32■□□□□ 0.68
COL6A1-206ENST00000498614 ZBTB3Q9H5J0 574 aa19.32■□□□□ 0.68
COL6A1-206ENST00000498614 QTRT2Q9H974 415 aaKnown RBP19.32■□□□□ 0.68
COL6A1-206ENST00000498614 H7C1W4 665 aa19.31■□□□□ 0.68
COL6A1-206ENST00000498614 USPL1Q5W0Q7 1092 aa19.31■□□□□ 0.68
COL6A1-206ENST00000498614 BARGINQ6ZT62 677 aa19.31■□□□□ 0.68
COL6A1-206ENST00000498614 FBXO41Q8TF61 875 aa19.31■□□□□ 0.68
COL6A1-206ENST00000498614 PDCP20941 246 aa19.3■□□□□ 0.68
COL6A1-206ENST00000498614 MARCH10Q8NA82 808 aaPredicted RBP19.3■□□□□ 0.68
COL6A1-206ENST00000498614 SPATA32Q96LK8 384 aa19.3■□□□□ 0.68
COL6A1-206ENST00000498614 CWC25Q9NXE8 425 aaPredicted RBP19.3■□□□□ 0.68
COL6A1-206ENST00000498614 U2AF2P26368 475 aaKnown RBP eCLIP19.3■□□□□ 0.68
COL6A1-206ENST00000498614 NKX1-1Q15270 411 aaPredicted RBP19.3■□□□□ 0.68
COL6A1-206ENST00000498614 TSGA10IPQ3SY00 556 aa19.3■□□□□ 0.68
COL6A1-206ENST00000498614 DRC7Q8IY82 874 aa19.3■□□□□ 0.68
COL6A1-206ENST00000498614 LEO1Q8WVC0 666 aaPredicted RBP19.3■□□□□ 0.68
COL6A1-206ENST00000498614 ACSBG1Q96GR2 724 aa19.3■□□□□ 0.68
COL6A1-206ENST00000498614 GOLGA6L4A6NEF3 574 aa19.29■□□□□ 0.68
COL6A1-206ENST00000498614 ZNF75DP51815 510 aa19.29■□□□□ 0.68
COL6A1-206ENST00000498614 SLFNL1Q499Z3 407 aa19.29■□□□□ 0.68
COL6A1-206ENST00000498614 ATG9AQ7Z3C6 839 aa19.29■□□□□ 0.68
COL6A1-206ENST00000498614 TIMM10P62072 90 aa19.29■□□□□ 0.68
COL6A1-206ENST00000498614 MCMDC2Q4G0Z9 681 aa19.29■□□□□ 0.68
COL6A1-206ENST00000498614 PLA2G4DQ86XP0 818 aa19.29■□□□□ 0.68
COL6A1-206ENST00000498614 SCAND2PQ9GZW5 306 aaPredicted RBP19.29■□□□□ 0.68
COL6A1-206ENST00000498614 ALDH8A1Q9H2A2 487 aaPredicted RBP19.29■□□□□ 0.68
COL6A1-206ENST00000498614 CLSTN2Q9H4D0 955 aa19.29■□□□□ 0.68
COL6A1-206ENST00000498614 NUP188Q5SRE5 1749 aa19.29■□□□□ 0.68
COL6A1-206ENST00000498614 RBM43Q6ZSC3 357 aaKnown RBP19.28■□□□□ 0.68
COL6A1-206ENST00000498614 ZNF594Q96JF6 807 aaPredicted RBP19.28■□□□□ 0.68
COL6A1-206ENST00000498614 C16orf45Q96MC5 204 aaPredicted RBP19.28■□□□□ 0.68
COL6A1-206ENST00000498614 NEK1Q96PY6 1258 aa19.28■□□□□ 0.68
COL6A1-206ENST00000498614 TRIM5Q9C035 493 aa19.28■□□□□ 0.68
COL6A1-206ENST00000498614 DDX19AQ9NUU7 478 aaKnown RBP19.28■□□□□ 0.68
COL6A1-206ENST00000498614 TJP1Q07157 1748 aa19.28■□□□□ 0.68
COL6A1-206ENST00000498614 RFX7Q2KHR2 1363 aa19.28■□□□□ 0.68
COL6A1-206ENST00000498614 NR1I2O75469 434 aa19.28■□□□□ 0.68
COL6A1-206ENST00000498614 KRT32Q14532 448 aa19.28■□□□□ 0.68
COL6A1-206ENST00000498614 ZSCAN25Q6NSZ9 544 aa19.28■□□□□ 0.68
COL6A1-206ENST00000498614 CDCA7Q9BWT1 371 aaPredicted RBP19.28■□□□□ 0.68
COL6A1-206ENST00000498614 UBR2Q8IWV8 1755 aa19.27■□□□□ 0.68
COL6A1-206ENST00000498614 GOLIM4O00461 696 aa19.27■□□□□ 0.68
COL6A1-206ENST00000498614 CYP21A2P08686 494 aa19.27■□□□□ 0.68
COL6A1-206ENST00000498614 PDIA4P13667 645 aaKnown RBP19.27■□□□□ 0.68
COL6A1-206ENST00000498614 NCBP1Q09161 790 aaKnown RBP19.27■□□□□ 0.68
COL6A1-206ENST00000498614 LRRC24Q50LG9 513 aa19.27■□□□□ 0.68
COL6A1-206ENST00000498614 KBTBD3Q8NAB2 608 aa19.27■□□□□ 0.68
COL6A1-206ENST00000498614 TDRD7Q8NHU6 1098 aaKnown RBP19.27■□□□□ 0.68
COL6A1-206ENST00000498614 PGBD1Q96JS3 809 aa19.27■□□□□ 0.68
COL6A1-206ENST00000498614 TRPC5Q9UL62 973 aaPredicted RBP19.27■□□□□ 0.68
COL6A1-206ENST00000498614 U3KPZ7 1027 aaPredicted RBP19.27■□□□□ 0.68
COL6A1-206ENST00000498614 KCPQ6ZWJ8 1503 aa19.27■□□□□ 0.68
COL6A1-206ENST00000498614 ERVV-2B6SEH9 535 aa19.27■□□□□ 0.67
COL6A1-206ENST00000498614 Q6ZUG5 572 aa19.26■□□□□ 0.67
COL6A1-206ENST00000498614 LRRC2Q9BYS8 371 aa19.26■□□□□ 0.67
COL6A1-206ENST00000498614 GTPBP4Q9BZE4 634 aaKnown RBP19.26■□□□□ 0.67
COL6A1-206ENST00000498614 DNAJC25Q9H1X3 360 aa19.26■□□□□ 0.67
COL6A1-206ENST00000498614 TNS2Q63HR2 1409 aa19.26■□□□□ 0.67
COL6A1-206ENST00000498614 PIGBQ92521 554 aa19.26■□□□□ 0.67
COL6A1-206ENST00000498614 PAG1Q9NWQ8 432 aa19.26■□□□□ 0.67
COL6A1-206ENST00000498614 JAK2O60674 1132 aa19.25■□□□□ 0.67
COL6A1-206ENST00000498614 HSP90B1P14625 803 aaKnown RBP19.25■□□□□ 0.67
COL6A1-206ENST00000498614 BICD2Q8TD16 824 aa19.25■□□□□ 0.67
COL6A1-206ENST00000498614 TMOD3Q9NYL9 352 aa19.25■□□□□ 0.67
COL6A1-206ENST00000498614 ZNF165P49910 485 aa19.25■□□□□ 0.67
COL6A1-206ENST00000498614 ASAP1Q9ULH1 1129 aa19.25■□□□□ 0.67
COL6A1-206ENST00000498614 ZNF330Q9Y3S2 320 aaPredicted RBP19.25■□□□□ 0.67
COL6A1-206ENST00000498614 WNK3Q9BYP7 1800 aa19.24■□□□□ 0.67
COL6A1-206ENST00000498614 SMTNL1A8MU46 457 aa19.24■□□□□ 0.67
COL6A1-206ENST00000498614 TNNT1P13805 278 aa19.24■□□□□ 0.67
COL6A1-206ENST00000498614 IL15P40933 162 aaPredicted RBP19.24■□□□□ 0.67
COL6A1-206ENST00000498614 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.24■□□□□ 0.67
COL6A1-206ENST00000498614 CCDC191Q8NCU4 936 aa19.24■□□□□ 0.67
COL6A1-206ENST00000498614 CACTINQ8WUQ7 758 aaKnown RBP19.24■□□□□ 0.67
COL6A1-206ENST00000498614 GTF3C6Q969F1 213 aa19.24■□□□□ 0.67
COL6A1-206ENST00000498614 SH3TC1Q8TE82 1336 aa19.24■□□□□ 0.67
COL6A1-206ENST00000498614 KCNQ2O43526 872 aa19.24■□□□□ 0.67
COL6A1-206ENST00000498614 CCDC144BQ3MJ40 725 aa19.24■□□□□ 0.67
COL6A1-206ENST00000498614 STOX1Q6ZVD7 989 aa19.24■□□□□ 0.67
COL6A1-206ENST00000498614 CCDC144CPQ8IYA2 1237 aa19.24■□□□□ 0.67
COL6A1-206ENST00000498614 PUS3Q9BZE2 481 aaKnown RBP19.24■□□□□ 0.67
COL6A1-206ENST00000498614 TOGARAM1Q9Y4F4 1720 aa19.23■□□□□ 0.67
COL6A1-206ENST00000498614 PALLDQ8WX93 1383 aa19.23■□□□□ 0.67
COL6A1-206ENST00000498614 EYA2O00167 538 aa19.23■□□□□ 0.67
COL6A1-206ENST00000498614 CLIP2Q9UDT6 1046 aa19.23■□□□□ 0.67
COL6A1-206ENST00000498614 BRF1Q92994 677 aa19.22■□□□□ 0.67
COL6A1-206ENST00000498614 PAPPAQ13219 1627 aa19.22■□□□□ 0.67
COL6A1-206ENST00000498614 A0A1B0GUL7 405 aa19.22■□□□□ 0.67
COL6A1-206ENST00000498614 RESTQ13127 1097 aa19.22■□□□□ 0.67
COL6A1-206ENST00000498614 NAA30Q147X3 362 aaPredicted RBP19.22■□□□□ 0.67
COL6A1-206ENST00000498614 PTF1AQ7RTS3 328 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms