RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 DCTPP1Q9H773 170 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 IL1RAPL2Q9NP60 686 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 NCAPD2Q15021 1401 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 KIF1AQ12756 1690 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 A1BGP04217 495 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 CCT4P50991 539 aaKnown RBP7.53□□□□□ -1.2
SSBP1-213ENST00000496622 BEND3Q5T5X7 828 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 TMTC2Q8N394 836 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 SRCIN1Q9C0H9 1055 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 ASAP1Q9ULH1 1129 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 COL5A2P05997 1499 aaPredicted RBP7.53□□□□□ -1.2
SSBP1-213ENST00000496622 ADCY9O60503 1353 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 USP54Q70EL1 1684 aa7.52□□□□□ -1.2
SSBP1-213ENST00000496622 ATP5J2-PTCD1G3V325 749 aa7.52□□□□□ -1.21
SSBP1-213ENST00000496622 GNAI2P04899 355 aa7.52□□□□□ -1.21
SSBP1-213ENST00000496622 XAGE3Q8WTP9 111 aa7.52□□□□□ -1.21
SSBP1-213ENST00000496622 SYMPKQ92797 1274 aaKnown RBP7.52□□□□□ -1.21
SSBP1-213ENST00000496622 CHMP4CQ96CF2 233 aa7.52□□□□□ -1.21
SSBP1-213ENST00000496622 UBTFL1P0CB47 393 aaPredicted RBP7.52□□□□□ -1.21
SSBP1-213ENST00000496622 GSPT1P15170 499 aaKnown RBP7.52□□□□□ -1.21
SSBP1-213ENST00000496622 GCGRP47871 477 aa7.52□□□□□ -1.21
SSBP1-213ENST00000496622 KLHDC4Q8TBB5 520 aa7.52□□□□□ -1.21
SSBP1-213ENST00000496622 GCC1Q96CN9 775 aa7.52□□□□□ -1.21
SSBP1-213ENST00000496622 FAM117AQ9C073 453 aa7.52□□□□□ -1.21
SSBP1-213ENST00000496622 BABAM1Q9NWV8 329 aa7.52□□□□□ -1.21
SSBP1-213ENST00000496622 PPP1R42Q7Z4L9 355 aa7.51□□□□□ -1.21
SSBP1-213ENST00000496622 PLEKHM2Q8IWE5 1019 aa7.51□□□□□ -1.21
SSBP1-213ENST00000496622 RPAP2Q8IXW5 612 aaPredicted RBP7.51□□□□□ -1.21
SSBP1-213ENST00000496622 SRGAP3O43295 1099 aa7.51□□□□□ -1.21
SSBP1-213ENST00000496622 RIC3Q7Z5B4 369 aa7.51□□□□□ -1.21
SSBP1-213ENST00000496622 SULF1Q8IWU6 871 aa7.51□□□□□ -1.21
SSBP1-213ENST00000496622 PA2G4Q9UQ80 394 aaKnown RBP7.51□□□□□ -1.21
SSBP1-213ENST00000496622 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.51□□□□□ -1.21
SSBP1-213ENST00000496622 KAT6BQ8WYB5 2073 aa7.51□□□□□ -1.21
SSBP1-213ENST00000496622 IGKV5-2P06315 115 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 FAM182BQ5T319 152 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 NBPF14Q5TI25 921 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 FOXD4L5Q5VV16 416 aaPredicted RBP7.5□□□□□ -1.21
SSBP1-213ENST00000496622 NBPF10Q6P3W6 841 aaKnown RBP7.5□□□□□ -1.21
SSBP1-213ENST00000496622 SCUBE3Q8IX30 993 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 NBPF15Q8N660 670 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 FOXD4L4Q8WXT5 416 aaPredicted RBP7.5□□□□□ -1.21
SSBP1-213ENST00000496622 SGSM3Q96HU1 749 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 KDM4CQ9H3R0 1056 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 DDX21Q9NR30 783 aaKnown RBP eCLIP7.5□□□□□ -1.21
SSBP1-213ENST00000496622 C9orf78Q9NZ63 289 aaPredicted RBP7.5□□□□□ -1.21
SSBP1-213ENST00000496622 SLC27A5Q9Y2P5 690 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 HEG1Q9ULI3 1381 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 KCNQ2O43526 872 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 SURF6O75683 361 aaKnown RBP7.5□□□□□ -1.21
SSBP1-213ENST00000496622 SNRPA1P09661 255 aaKnown RBP7.5□□□□□ -1.21
SSBP1-213ENST00000496622 UTP14CQ5TAP6 766 aaKnown RBP7.5□□□□□ -1.21
SSBP1-213ENST00000496622 KSR2Q6VAB6 950 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 TTLL7Q6ZT98 887 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 PIGBQ92521 554 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 ACSBG1Q96GR2 724 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 COL18A1P39060 1754 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 PCDH11XQ9BZA7 1347 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 PCDH11YQ9BZA8 1340 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 OVOS2A0A0G2JMS6 1433 aa7.5□□□□□ -1.21
SSBP1-213ENST00000496622 PHRF1Q9P1Y6 1649 aaKnown RBP7.5□□□□□ -1.21
SSBP1-213ENST00000496622 GNAI3P08754 354 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 NDUFV2P19404 249 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 RBM25P49756 843 aaKnown RBP7.49□□□□□ -1.21
SSBP1-213ENST00000496622 KCNQ4P56696 695 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 FOXD4L6Q3SYB3 417 aaPredicted RBP7.49□□□□□ -1.21
SSBP1-213ENST00000496622 FOXD4L3Q6VB84 417 aaPredicted RBP7.49□□□□□ -1.21
SSBP1-213ENST00000496622 RNF19BQ6ZMZ0 732 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 LRP10Q7Z4F1 713 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 NUTM1Q86Y26 1132 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 KAZALD1Q96I82 304 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 FMNL2Q96PY5 1086 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 MYD88Q99836 296 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 ZBTB3Q9H5J0 574 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 ACTN4O43707 911 aaKnown RBP7.49□□□□□ -1.21
SSBP1-213ENST00000496622 MAP4K4O95819 1239 aaPredicted RBP7.49□□□□□ -1.21
SSBP1-213ENST00000496622 C8orf37Q96NL8 207 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 SIL1Q9H173 461 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 LRRC37A3O60309 1634 aa7.49□□□□□ -1.21
SSBP1-213ENST00000496622 SOS1Q07889 1333 aaPredicted RBP7.49□□□□□ -1.21
SSBP1-213ENST00000496622 HOXB7P09629 217 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 ATP8B2P98198 1209 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 NBPF20Q3BBV1 942 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 EPHA10Q5JZY3 1008 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 TBC1D9Q6ZT07 1266 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 NWD2Q9ULI1 1742 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 SMIM5Q71RC9 77 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 PTF1AQ7RTS3 328 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 SUCLG2Q96I99 432 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 HYPKQ9NX55 129 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 TMOD3Q9NYL9 352 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 FAM208AQ9UK61 1670 aaKnown RBP7.48□□□□□ -1.21
SSBP1-213ENST00000496622 MOXD2PA6NHM9 499 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 RAD21O60216 631 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 CSPP1Q1MSJ5 1256 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 EP400NLQ6ZTU2 488 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 UNC5CLQ8IV45 518 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 DNAJC10Q8IXB1 793 aa7.48□□□□□ -1.21
SSBP1-213ENST00000496622 CCDC85AQ96PX6 553 aaPredicted RBP7.48□□□□□ -1.21
SSBP1-213ENST00000496622 SLC4A9Q96Q91 983 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms