RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 BSDC1Q9NW68 430 aaPredicted RBP14.79□□□□□ -0.04
COL6A3-213ENST00000493475 SSUH2Q9Y2M2 353 aa14.79□□□□□ -0.04
COL6A3-213ENST00000493475 ZNF609O15014 1411 aa14.78□□□□□ -0.04
COL6A3-213ENST00000493475 RTL9Q8NET4 1388 aa14.78□□□□□ -0.04
COL6A3-213ENST00000493475 NF2P35240 595 aa14.78□□□□□ -0.04
COL6A3-213ENST00000493475 MPHOSPH8Q99549 860 aa14.78□□□□□ -0.04
COL6A3-213ENST00000493475 ANKRD2Q9GZV1 360 aa14.78□□□□□ -0.04
COL6A3-213ENST00000493475 MED23Q9ULK4 1368 aa14.77□□□□□ -0.04
COL6A3-213ENST00000493475 PITPNM2Q9BZ72 1349 aa14.77□□□□□ -0.04
COL6A3-213ENST00000493475 SHTN1A0MZ66 631 aa14.77□□□□□ -0.05
COL6A3-213ENST00000493475 CCDC85CA6NKD9 419 aa14.77□□□□□ -0.05
COL6A3-213ENST00000493475 KCNJ4P48050 445 aa14.77□□□□□ -0.05
COL6A3-213ENST00000493475 ZNF280AP59817 542 aaPredicted RBP14.77□□□□□ -0.05
COL6A3-213ENST00000493475 TSR2Q969E8 191 aaKnown RBP14.77□□□□□ -0.05
COL6A3-213ENST00000493475 MYOZ2Q9NPC6 264 aa14.77□□□□□ -0.05
COL6A3-213ENST00000493475 SAGE1Q9NXZ1 904 aa14.77□□□□□ -0.05
COL6A3-213ENST00000493475 LEMD3Q9Y2U8 911 aa14.77□□□□□ -0.05
COL6A3-213ENST00000493475 ADM5C9JUS6 153 aa14.76□□□□□ -0.05
COL6A3-213ENST00000493475 ANP32CO43423 234 aa14.76□□□□□ -0.05
COL6A3-213ENST00000493475 ZEB1P37275 1124 aaPredicted RBP14.76□□□□□ -0.05
COL6A3-213ENST00000493475 FKBP5Q13451 457 aaPredicted RBP14.76□□□□□ -0.05
COL6A3-213ENST00000493475 ANGEL2Q5VTE6 544 aaKnown RBP14.76□□□□□ -0.05
COL6A3-213ENST00000493475 UBE3BQ7Z3V4 1068 aa14.76□□□□□ -0.05
COL6A3-213ENST00000493475 WWC1Q8IX03 1113 aa14.76□□□□□ -0.05
COL6A3-213ENST00000493475 TTLL11Q8NHH1 800 aa14.76□□□□□ -0.05
COL6A3-213ENST00000493475 FBXW7Q969H0 707 aa14.76□□□□□ -0.05
COL6A3-213ENST00000493475 COA1Q9GZY4 146 aa14.76□□□□□ -0.05
COL6A3-213ENST00000493475 HDAC9Q9UKV0 1011 aa14.76□□□□□ -0.05
COL6A3-213ENST00000493475 TAF1P21675 1872 aa14.76□□□□□ -0.05
COL6A3-213ENST00000493475 NEURL1BA8MQ27 555 aa14.75□□□□□ -0.05
COL6A3-213ENST00000493475 CCT4P50991 539 aaKnown RBP14.75□□□□□ -0.05
COL6A3-213ENST00000493475 SCARF1Q14162 830 aa14.75□□□□□ -0.05
COL6A3-213ENST00000493475 TSPYL6Q8N831 410 aa14.75□□□□□ -0.05
COL6A3-213ENST00000493475 JARID2Q92833 1246 aaPredicted RBP14.75□□□□□ -0.05
COL6A3-213ENST00000493475 CDCA5Q96FF9 252 aa14.75□□□□□ -0.05
COL6A3-213ENST00000493475 MRS2Q9HD23 443 aa14.75□□□□□ -0.05
COL6A3-213ENST00000493475 KCNQ5Q9NR82 932 aa14.75□□□□□ -0.05
COL6A3-213ENST00000493475 TSKSQ9UJT2 592 aa14.75□□□□□ -0.05
COL6A3-213ENST00000493475 MINPP1Q9UNW1 487 aa14.75□□□□□ -0.05
COL6A3-213ENST00000493475 IGKV5-2P06315 115 aa14.74□□□□□ -0.05
COL6A3-213ENST00000493475 FLIIQ13045 1269 aa14.74□□□□□ -0.05
COL6A3-213ENST00000493475 STRIP1Q5VSL9 837 aa14.74□□□□□ -0.05
COL6A3-213ENST00000493475 LINS1Q8NG48 757 aa14.74□□□□□ -0.05
COL6A3-213ENST00000493475 GREM2Q9H772 168 aa14.74□□□□□ -0.05
COL6A3-213ENST00000493475 EGFRP00533 1210 aa14.73□□□□□ -0.05
COL6A3-213ENST00000493475 TTLL12Q14166 644 aaPredicted RBP14.73□□□□□ -0.05
COL6A3-213ENST00000493475 GCKRQ14397 625 aa14.73□□□□□ -0.05
COL6A3-213ENST00000493475 CWF19L2Q2TBE0 894 aaKnown RBP14.73□□□□□ -0.05
COL6A3-213ENST00000493475 DNAAF4Q8WXU2 420 aa14.73□□□□□ -0.05
COL6A3-213ENST00000493475 ANKRD18BA2A2Z9 1011 aa14.72□□□□□ -0.05
COL6A3-213ENST00000493475 H7C1W4 665 aa14.72□□□□□ -0.05
COL6A3-213ENST00000493475 ITGA6P23229 1130 aa14.72□□□□□ -0.05
COL6A3-213ENST00000493475 KIF23Q02241 960 aaPredicted RBP14.72□□□□□ -0.05
COL6A3-213ENST00000493475 DGKZQ13574 1117 aa14.72□□□□□ -0.05
COL6A3-213ENST00000493475 WDR63Q8IWG1 891 aa14.72□□□□□ -0.05
COL6A3-213ENST00000493475 PLA2G12BQ9BX93 195 aa14.72□□□□□ -0.05
COL6A3-213ENST00000493475 ZNF804BA4D1E1 1349 aa14.71□□□□□ -0.05
COL6A3-213ENST00000493475 SLC10A3P09131 477 aa14.71□□□□□ -0.05
COL6A3-213ENST00000493475 MLLT1Q03111 559 aaPredicted RBP14.71□□□□□ -0.05
COL6A3-213ENST00000493475 FANCIQ9NVI1 1328 aa14.7□□□□□ -0.06
COL6A3-213ENST00000493475 MYO1BO43795 1136 aa14.7□□□□□ -0.06
COL6A3-213ENST00000493475 IFIT5Q13325 482 aaKnown RBP14.7□□□□□ -0.06
COL6A3-213ENST00000493475 TAF7LQ5H9L4 462 aa14.7□□□□□ -0.06
COL6A3-213ENST00000493475 TTLL5Q6EMB2 1281 aa14.7□□□□□ -0.06
COL6A3-213ENST00000493475 APOBEC3FQ8IUX4 373 aaKnown RBP14.7□□□□□ -0.06
COL6A3-213ENST00000493475 GMLQ99445 158 aa14.7□□□□□ -0.06
COL6A3-213ENST00000493475 MCOLN1Q9GZU1 580 aa14.7□□□□□ -0.06
COL6A3-213ENST00000493475 CHMP3Q9Y3E7 222 aa14.7□□□□□ -0.06
COL6A3-213ENST00000493475 FAM155AB1AL88 458 aaPredicted RBP14.69□□□□□ -0.06
COL6A3-213ENST00000493475 GABBR2O75899 941 aa14.69□□□□□ -0.06
COL6A3-213ENST00000493475 DACT2Q5SW24 774 aa14.69□□□□□ -0.06
COL6A3-213ENST00000493475 ARMC9Q7Z3E5 817 aa14.69□□□□□ -0.06
COL6A3-213ENST00000493475 ZNF804AQ7Z570 1209 aa14.69□□□□□ -0.06
COL6A3-213ENST00000493475 TRPA1O75762 1119 aa14.68□□□□□ -0.06
COL6A3-213ENST00000493475 SREBF2Q12772 1141 aa14.68□□□□□ -0.06
COL6A3-213ENST00000493475 CCDC57Q2TAC2 916 aa14.68□□□□□ -0.06
COL6A3-213ENST00000493475 FAM161AQ3B820 660 aa14.68□□□□□ -0.06
COL6A3-213ENST00000493475 RNF186Q9NXI6 227 aa14.68□□□□□ -0.06
COL6A3-213ENST00000493475 COL4A1P02462 1669 aa14.68□□□□□ -0.06
COL6A3-213ENST00000493475 PAPPA2Q9BXP8 1791 aa14.68□□□□□ -0.06
COL6A3-213ENST00000493475 MYH3P11055 1940 aa14.67□□□□□ -0.06
COL6A3-213ENST00000493475 CSF1RP07333 972 aa14.67□□□□□ -0.06
COL6A3-213ENST00000493475 DLK2Q6UY11 383 aa14.67□□□□□ -0.06
COL6A3-213ENST00000493475 G2E3Q7L622 706 aa14.67□□□□□ -0.06
COL6A3-213ENST00000493475 RASAL3Q86YV0 1011 aa14.67□□□□□ -0.06
COL6A3-213ENST00000493475 ASTN2O75129 1339 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-213ENST00000493475 WNT10BO00744 389 aa14.66□□□□□ -0.06
COL6A3-213ENST00000493475 GTF2IP78347 998 aa14.66□□□□□ -0.06
COL6A3-213ENST00000493475 CHRNDQ07001 517 aa14.66□□□□□ -0.06
COL6A3-213ENST00000493475 DLGAP5Q15398 846 aa14.66□□□□□ -0.06
COL6A3-213ENST00000493475 NBPF9Q3BBW0 867 aa14.66□□□□□ -0.06
COL6A3-213ENST00000493475 KIAA0825Q8IV33 1275 aa14.66□□□□□ -0.06
COL6A3-213ENST00000493475 C9orf78Q9NZ63 289 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-213ENST00000493475 SALL2Q9Y467 1007 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-213ENST00000493475 SCN9AQ15858 1988 aa14.65□□□□□ -0.06
COL6A3-213ENST00000493475 COL1A1P02452 1464 aaPredicted RBP14.65□□□□□ -0.06
COL6A3-213ENST00000493475 PSME4Q14997 1843 aa14.65□□□□□ -0.06
COL6A3-213ENST00000493475 VAMP4O75379 141 aa14.65□□□□□ -0.06
COL6A3-213ENST00000493475 EXOSC9Q06265 439 aaKnown RBP14.65□□□□□ -0.06
COL6A3-213ENST00000493475 PKN2Q16513 984 aaKnown RBP14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms