RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 HDGFL2Q7Z4V5 671 aaPredicted RBP7.28□□□□□ -1.24
VPS41-214ENST00000490924 BANK1Q8NDB2 785 aa7.28□□□□□ -1.24
VPS41-214ENST00000490924 KLRG1Q96E93 195 aa7.28□□□□□ -1.24
VPS41-214ENST00000490924 OSBPL3Q9H4L5 887 aa7.28□□□□□ -1.24
VPS41-214ENST00000490924 IBTKQ9P2D0 1353 aaPredicted RBP7.28□□□□□ -1.24
VPS41-214ENST00000490924 CDK12Q9NYV4 1490 aaPredicted RBP7.28□□□□□ -1.24
VPS41-214ENST00000490924 CPSF1Q10570 1443 aaKnown RBP7.27□□□□□ -1.24
VPS41-214ENST00000490924 DIAPH1O60610 1272 aaKnown RBP7.27□□□□□ -1.25
VPS41-214ENST00000490924 MCM4P33991 863 aa7.27□□□□□ -1.25
VPS41-214ENST00000490924 C22orf23Q9BZE7 217 aa7.27□□□□□ -1.25
VPS41-214ENST00000490924 SMC4Q9NTJ3 1288 aa7.27□□□□□ -1.25
VPS41-214ENST00000490924 IFT57Q9NWB7 429 aa7.27□□□□□ -1.25
VPS41-214ENST00000490924 RICTORQ6R327 1708 aa7.27□□□□□ -1.25
VPS41-214ENST00000490924 SIGLEC1Q9BZZ2 1709 aa7.27□□□□□ -1.25
VPS41-214ENST00000490924 TECPR2O15040 1411 aa7.27□□□□□ -1.25
VPS41-214ENST00000490924 EDC4Q6P2E9 1401 aaKnown RBP7.27□□□□□ -1.25
VPS41-214ENST00000490924 PREX1Q8TCU6 1659 aa7.26□□□□□ -1.25
VPS41-214ENST00000490924 FYB1O15117 783 aa7.26□□□□□ -1.25
VPS41-214ENST00000490924 TRAK2O60296 914 aa7.26□□□□□ -1.25
VPS41-214ENST00000490924 SCTRP47872 440 aa7.26□□□□□ -1.25
VPS41-214ENST00000490924 MRE11P49959 708 aa7.26□□□□□ -1.25
VPS41-214ENST00000490924 SKAP1Q86WV1 359 aa7.26□□□□□ -1.25
VPS41-214ENST00000490924 HSCBQ8IWL3 235 aa7.26□□□□□ -1.25
VPS41-214ENST00000490924 SSH1Q8WYL5 1049 aa7.26□□□□□ -1.25
VPS41-214ENST00000490924 GNB5O14775 395 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 ZNF853P0CG23 659 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 BAG6P46379 1132 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 GNAI1P63096 354 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 SLFNL1Q499Z3 407 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 TBC1D9Q6ZT07 1266 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 RHBDD1Q8TEB9 315 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 RUBCNLQ9H714 662 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 GJA3Q9Y6H8 435 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 ALKQ9UM73 1620 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 TSPOAP1O95153 1857 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 ABCC4O15439 1325 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 SPATA31D1Q6ZQQ2 1576 aa7.25□□□□□ -1.25
VPS41-214ENST00000490924 LRRC7Q96NW7 1537 aa7.24□□□□□ -1.25
VPS41-214ENST00000490924 GOLGA6L3A6NEY3 463 aa7.24□□□□□ -1.25
VPS41-214ENST00000490924 FGFR3P22607 806 aa7.24□□□□□ -1.25
VPS41-214ENST00000490924 EXOSC9Q06265 439 aaKnown RBP7.24□□□□□ -1.25
VPS41-214ENST00000490924 IDI1Q13907 227 aa7.24□□□□□ -1.25
VPS41-214ENST00000490924 CHD1LQ86WJ1 897 aa7.24□□□□□ -1.25
VPS41-214ENST00000490924 XAGE2Q96GT9 111 aa7.24□□□□□ -1.25
VPS41-214ENST00000490924 GJD4Q96KN9 370 aaPredicted RBP7.24□□□□□ -1.25
VPS41-214ENST00000490924 GBP4Q96PP9 640 aa7.24□□□□□ -1.25
VPS41-214ENST00000490924 API5Q9BZZ5 524 aaKnown RBP7.24□□□□□ -1.25
VPS41-214ENST00000490924 DOLKQ9UPQ8 538 aa7.24□□□□□ -1.25
VPS41-214ENST00000490924 KIF20BQ96Q89 1820 aa7.24□□□□□ -1.25
VPS41-214ENST00000490924 EPB41L2O43491 1005 aaKnown RBP7.23□□□□□ -1.25
VPS41-214ENST00000490924 PROCP04070 461 aa7.23□□□□□ -1.25
VPS41-214ENST00000490924 MSX1P28360 303 aa7.23□□□□□ -1.25
VPS41-214ENST00000490924 RIPK4P57078 832 aa7.23□□□□□ -1.25
VPS41-214ENST00000490924 SNRPNP63162 240 aaKnown RBP7.23□□□□□ -1.25
VPS41-214ENST00000490924 TLR1Q15399 786 aa7.23□□□□□ -1.25
VPS41-214ENST00000490924 NFE2L2Q16236 605 aa7.23□□□□□ -1.25
VPS41-214ENST00000490924 TMEM132EQ6IEE7 984 aa7.23□□□□□ -1.25
VPS41-214ENST00000490924 GGT6Q6P531 493 aa7.23□□□□□ -1.25
VPS41-214ENST00000490924 SLCO4C1Q6ZQN7 724 aa7.23□□□□□ -1.25
VPS41-214ENST00000490924 AIDAQ96BJ3 306 aa7.23□□□□□ -1.25
VPS41-214ENST00000490924 BRPF3Q9ULD4 1205 aa7.23□□□□□ -1.25
VPS41-214ENST00000490924 SOS1Q07889 1333 aaPredicted RBP7.23□□□□□ -1.25
VPS41-214ENST00000490924 KIAA0232Q92628 1395 aa7.22□□□□□ -1.25
VPS41-214ENST00000490924 KNDC1Q76NI1 1749 aa7.22□□□□□ -1.25
VPS41-214ENST00000490924 ZBTB7BO15156 539 aaPredicted RBP7.22□□□□□ -1.25
VPS41-214ENST00000490924 IL2RAP01589 272 aa7.22□□□□□ -1.25
VPS41-214ENST00000490924 SRPK2P78362 688 aaKnown RBP7.22□□□□□ -1.25
VPS41-214ENST00000490924 ITPRIPQ8IWB1 547 aa7.22□□□□□ -1.25
VPS41-214ENST00000490924 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS41-214ENST00000490924 C1orf216Q8TAB5 229 aa7.22□□□□□ -1.25
VPS41-214ENST00000490924 ABHD17AQ96GS6 310 aa7.22□□□□□ -1.25
VPS41-214ENST00000490924 CEP126Q9P2H0 1117 aa7.22□□□□□ -1.25
VPS41-214ENST00000490924 GGA1Q9UJY5 639 aa7.22□□□□□ -1.25
VPS41-214ENST00000490924 NOB1Q9ULX3 412 aaKnown RBP7.22□□□□□ -1.25
VPS41-214ENST00000490924 RRP7AQ9Y3A4 280 aaKnown RBP7.22□□□□□ -1.25
VPS41-214ENST00000490924 NRKQ7Z2Y5 1582 aa7.21□□□□□ -1.25
VPS41-214ENST00000490924 SPDYE3A6NKU9 549 aa7.21□□□□□ -1.26
VPS41-214ENST00000490924 SHISA8B8ZZ34 492 aa7.21□□□□□ -1.26
VPS41-214ENST00000490924 RAB3GAP1Q15042 981 aa7.21□□□□□ -1.26
VPS41-214ENST00000490924 C4orf17Q53FE4 359 aa7.21□□□□□ -1.26
VPS41-214ENST00000490924 XP32Q5T750 250 aa7.21□□□□□ -1.26
VPS41-214ENST00000490924 RNF135Q8IUD6 432 aa7.21□□□□□ -1.26
VPS41-214ENST00000490924 TMEM57Q8N5G2 664 aa7.21□□□□□ -1.26
VPS41-214ENST00000490924 POGKQ9P215 609 aa7.21□□□□□ -1.26
VPS41-214ENST00000490924 PCDHGC4Q9Y5F7 938 aa7.21□□□□□ -1.26
VPS41-214ENST00000490924 A2ML1A8K2U0 1454 aa7.21□□□□□ -1.26
VPS41-214ENST00000490924 SETD1AO15047 1707 aaKnown RBP7.21□□□□□ -1.26
VPS41-214ENST00000490924 ARHGEF10O15013 1369 aa7.2□□□□□ -1.26
VPS41-214ENST00000490924 KRBA1A5PL33 1030 aa7.2□□□□□ -1.26
VPS41-214ENST00000490924 GOLGA6L22H0YM25 854 aa7.2□□□□□ -1.26
VPS41-214ENST00000490924 U2SURPO15042 1029 aaKnown RBP7.2□□□□□ -1.26
VPS41-214ENST00000490924 VAMP4O75379 141 aa7.2□□□□□ -1.26
VPS41-214ENST00000490924 FURINP09958 794 aa7.2□□□□□ -1.26
VPS41-214ENST00000490924 ARAFP10398 606 aa7.2□□□□□ -1.26
VPS41-214ENST00000490924 TATP17735 454 aaPredicted RBP7.2□□□□□ -1.26
VPS41-214ENST00000490924 RABEP1Q15276 862 aa7.2□□□□□ -1.26
VPS41-214ENST00000490924 HS1BP3Q53T59 392 aa7.2□□□□□ -1.26
VPS41-214ENST00000490924 ARSJQ5FYB0 599 aaPredicted RBP7.2□□□□□ -1.26
VPS41-214ENST00000490924 INTS3Q68E01 1043 aaKnown RBP7.2□□□□□ -1.26
VPS41-214ENST00000490924 RPAP2Q8IXW5 612 aaPredicted RBP7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms