RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 CD2APQ9Y5K6 639 aa13.05□□□□□ -0.32
USP11-209ENST00000488848 MED23Q9ULK4 1368 aa13.05□□□□□ -0.32
USP11-209ENST00000488848 PPEF1O14829 653 aaPredicted RBP13.04□□□□□ -0.32
USP11-209ENST00000488848 ADORA1P30542 326 aa13.04□□□□□ -0.32
USP11-209ENST00000488848 CCDC158Q5M9N0 1113 aa13.04□□□□□ -0.32
USP11-209ENST00000488848 FBXO33Q7Z6M2 555 aa13.04□□□□□ -0.32
USP11-209ENST00000488848 C2CD5Q86YS7 1000 aa13.04□□□□□ -0.32
USP11-209ENST00000488848 CNTROBQ8N137 903 aa13.04□□□□□ -0.32
USP11-209ENST00000488848 RTFDC1Q9BY42 306 aaPredicted RBP13.04□□□□□ -0.32
USP11-209ENST00000488848 MYH7P12883 1935 aa13.03□□□□□ -0.32
USP11-209ENST00000488848 KCNA3P22001 575 aa13.03□□□□□ -0.32
USP11-209ENST00000488848 ATP2B4P23634 1241 aa13.03□□□□□ -0.32
USP11-209ENST00000488848 TSHZ3Q63HK5 1081 aa13.03□□□□□ -0.32
USP11-209ENST00000488848 CCDC102BQ68D86 513 aa13.03□□□□□ -0.32
USP11-209ENST00000488848 MYH13Q9UKX3 1938 aa13.03□□□□□ -0.32
USP11-209ENST00000488848 ARFGEF1Q9Y6D6 1849 aa13.02□□□□□ -0.32
USP11-209ENST00000488848 CACNA1SQ13698 1873 aa13.02□□□□□ -0.32
USP11-209ENST00000488848 HIP1O00291 1037 aa13.02□□□□□ -0.33
USP11-209ENST00000488848 TAF5LO75529 589 aa13.02□□□□□ -0.33
USP11-209ENST00000488848 ZBTB7AO95365 584 aa13.02□□□□□ -0.33
USP11-209ENST00000488848 TBC1D9Q6ZT07 1266 aa13.02□□□□□ -0.33
USP11-209ENST00000488848 KBTBD3Q8NAB2 608 aa13.02□□□□□ -0.33
USP11-209ENST00000488848 NEUROD6Q96NK8 337 aa13.02□□□□□ -0.33
USP11-209ENST00000488848 RAD50Q92878 1312 aa13.02□□□□□ -0.33
USP11-209ENST00000488848 MCAMP43121 646 aa13.01□□□□□ -0.33
USP11-209ENST00000488848 PRPF40BQ6NWY9 871 aaKnown RBP13.01□□□□□ -0.33
USP11-209ENST00000488848 HELBQ8NG08 1087 aaPredicted RBP13.01□□□□□ -0.33
USP11-209ENST00000488848 FAM84BQ96KN1 310 aaPredicted RBP13.01□□□□□ -0.33
USP11-209ENST00000488848 COL1A1P02452 1464 aaPredicted RBP13.01□□□□□ -0.33
USP11-209ENST00000488848 MAST2Q6P0Q8 1798 aa13.01□□□□□ -0.33
USP11-209ENST00000488848 ZNF646O15015 1829 aaPredicted RBP13□□□□□ -0.33
USP11-209ENST00000488848 SALL1Q9NSC2 1324 aa13□□□□□ -0.33
USP11-209ENST00000488848 CHMLP26374 656 aa13□□□□□ -0.33
USP11-209ENST00000488848 PHKA1P46020 1223 aa13□□□□□ -0.33
USP11-209ENST00000488848 GPSM2P81274 684 aa13□□□□□ -0.33
USP11-209ENST00000488848 SOGA3Q5TF21 947 aa13□□□□□ -0.33
USP11-209ENST00000488848 TBC1D16Q8TBP0 767 aa13□□□□□ -0.33
USP11-209ENST00000488848 PAG1Q9NWQ8 432 aa13□□□□□ -0.33
USP11-209ENST00000488848 GGA1Q9UJY5 639 aa13□□□□□ -0.33
USP11-209ENST00000488848 FER1L6Q2WGJ9 1857 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 PSME4Q14997 1843 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 IL1R1P14778 569 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 RASGRF1Q13972 1273 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 TTF1Q15361 905 aaPredicted RBP12.99□□□□□ -0.33
USP11-209ENST00000488848 CAVIN4Q5BKX8 364 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 TTC39AQ5SRH9 613 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 GORABQ5T7V8 394 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 CASC1Q6TDU7 716 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 TTLL6Q8N841 843 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 IL17RAQ96F46 866 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 PSMD1Q99460 953 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 VPS33BQ9H267 617 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 BOLA2Q9H3K6 86 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 GNL3LQ9NVN8 582 aaKnown RBP12.99□□□□□ -0.33
USP11-209ENST00000488848 HMG20BQ9P0W2 317 aa12.99□□□□□ -0.33
USP11-209ENST00000488848 GOLGB1Q14789 3259 aaKnown RBP12.99□□□□□ -0.33
USP11-209ENST00000488848 SNAP23O00161 211 aa12.98□□□□□ -0.33
USP11-209ENST00000488848 ZFYP08048 801 aaPredicted RBP12.98□□□□□ -0.33
USP11-209ENST00000488848 CHRNA5P30532 468 aa12.98□□□□□ -0.33
USP11-209ENST00000488848 SCARF1Q14162 830 aa12.98□□□□□ -0.33
USP11-209ENST00000488848 LRRFIP1Q32MZ4 808 aaKnown RBP12.98□□□□□ -0.33
USP11-209ENST00000488848 SPATA5Q8NB90 893 aa12.98□□□□□ -0.33
USP11-209ENST00000488848 TDRD7Q8NHU6 1098 aaKnown RBP12.98□□□□□ -0.33
USP11-209ENST00000488848 SPON1Q9HCB6 807 aa12.98□□□□□ -0.33
USP11-209ENST00000488848 ANKIB1Q9P2G1 1089 aa12.98□□□□□ -0.33
USP11-209ENST00000488848 POLLQ9UGP5 575 aa12.98□□□□□ -0.33
USP11-209ENST00000488848 DENND2AQ9ULE3 1009 aa12.98□□□□□ -0.33
USP11-209ENST00000488848 TRIM6-TRIM34B2RNG4 842 aa12.97□□□□□ -0.33
USP11-209ENST00000488848 SGSM2O43147 1006 aa12.97□□□□□ -0.33
USP11-209ENST00000488848 CYP2E1P05181 493 aaPredicted RBP12.97□□□□□ -0.33
USP11-209ENST00000488848 DPEP1P16444 411 aa12.97□□□□□ -0.33
USP11-209ENST00000488848 HIBADHP31937 336 aaKnown RBP12.97□□□□□ -0.33
USP11-209ENST00000488848 KCNJ4P48050 445 aa12.97□□□□□ -0.33
USP11-209ENST00000488848 BCAMP50895 628 aa12.97□□□□□ -0.33
USP11-209ENST00000488848 MPNDQ8N594 471 aa12.97□□□□□ -0.33
USP11-209ENST00000488848 ESYT1Q9BSJ8 1104 aa12.97□□□□□ -0.33
USP11-209ENST00000488848 ATF5Q9Y2D1 282 aaPredicted RBP12.97□□□□□ -0.33
USP11-209ENST00000488848 FAM205AQ6ZU69 1335 aa12.96□□□□□ -0.33
USP11-209ENST00000488848 LTBP3Q9NS15 1303 aa12.96□□□□□ -0.33
USP11-209ENST00000488848 PSDA5PKW4 1024 aaPredicted RBP12.96□□□□□ -0.33
USP11-209ENST00000488848 UFL1O94874 794 aa12.96□□□□□ -0.33
USP11-209ENST00000488848 KLRK1P26718 216 aa12.96□□□□□ -0.33
USP11-209ENST00000488848 ZNF804AQ7Z570 1209 aa12.96□□□□□ -0.33
USP11-209ENST00000488848 RTKN2Q8IZC4 609 aa12.96□□□□□ -0.33
USP11-209ENST00000488848 ZNF622Q969S3 477 aaKnown RBP eCLIP12.96□□□□□ -0.33
USP11-209ENST00000488848 EYA3Q99504 573 aa12.96□□□□□ -0.33
USP11-209ENST00000488848 NSFL1CQ9UNZ2 370 aaKnown RBP12.96□□□□□ -0.33
USP11-209ENST00000488848 MYO5AQ9Y4I1 1855 aaKnown RBP12.95□□□□□ -0.34
USP11-209ENST00000488848 WTIPA6NIX2 430 aaPredicted RBP12.95□□□□□ -0.34
USP11-209ENST00000488848 REC8O95072 547 aa12.95□□□□□ -0.34
USP11-209ENST00000488848 ZAP70P43403 619 aa12.95□□□□□ -0.34
USP11-209ENST00000488848 GYG1P46976 350 aa12.95□□□□□ -0.34
USP11-209ENST00000488848 UBE3CQ15386 1083 aa12.95□□□□□ -0.34
USP11-209ENST00000488848 CCDC93Q567U6 631 aa12.95□□□□□ -0.34
USP11-209ENST00000488848 DPP8Q6V1X1 898 aaPredicted RBP12.95□□□□□ -0.34
USP11-209ENST00000488848 TXNRD3Q86VQ6 643 aa12.95□□□□□ -0.34
USP11-209ENST00000488848 SUPT20HQ8NEM7 779 aa12.95□□□□□ -0.34
USP11-209ENST00000488848 RUFY2Q8WXA3 655 aa12.95□□□□□ -0.34
USP11-209ENST00000488848 COA1Q9GZY4 146 aa12.95□□□□□ -0.34
USP11-209ENST00000488848 TMX4Q9H1E5 349 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms