RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 RGS9O75916 674 aaPredicted RBP9.27□□□□□ -0.93
USP48-209ENST00000487880 ZNF16P17020 682 aaPredicted RBP9.27□□□□□ -0.93
USP48-209ENST00000487880 AMPD1P23109 780 aa9.27□□□□□ -0.93
USP48-209ENST00000487880 COL9A3Q14050 684 aaPredicted RBP9.27□□□□□ -0.93
USP48-209ENST00000487880 HHIPQ96QV1 700 aa9.27□□□□□ -0.93
USP48-209ENST00000487880 TCF12Q99081 682 aa9.27□□□□□ -0.93
USP48-209ENST00000487880 DUSP9Q99956 384 aaKnown RBP9.27□□□□□ -0.93
USP48-209ENST00000487880 SUV39H2Q9H5I1 410 aa9.27□□□□□ -0.93
USP48-209ENST00000487880 JPH1Q9HDC5 661 aaPredicted RBP9.27□□□□□ -0.93
USP48-209ENST00000487880 TRPA1O75762 1119 aa9.26□□□□□ -0.93
USP48-209ENST00000487880 SMNDC1O75940 238 aaKnown RBP eCLIP9.26□□□□□ -0.93
USP48-209ENST00000487880 AFF1P51825 1210 aaKnown RBP9.26□□□□□ -0.93
USP48-209ENST00000487880 GRM2Q14416 872 aa9.26□□□□□ -0.93
USP48-209ENST00000487880 PRPF40BQ6NWY9 871 aaKnown RBP9.26□□□□□ -0.93
USP48-209ENST00000487880 ADAMTSL4Q6UY14 1074 aa9.26□□□□□ -0.93
USP48-209ENST00000487880 CCNJLQ8IV13 435 aa9.26□□□□□ -0.93
USP48-209ENST00000487880 NUDT8Q8WV74 236 aa9.26□□□□□ -0.93
USP48-209ENST00000487880 NXPE3Q969Y0 559 aa9.26□□□□□ -0.93
USP48-209ENST00000487880 POP1Q99575 1024 aaKnown RBP9.26□□□□□ -0.93
USP48-209ENST00000487880 RNF19AQ9NV58 838 aa9.26□□□□□ -0.93
USP48-209ENST00000487880 NLRP2Q9NX02 1062 aa9.26□□□□□ -0.93
USP48-209ENST00000487880 PDE2AO00408 941 aaPredicted RBP9.25□□□□□ -0.93
USP48-209ENST00000487880 GNA15P30679 374 aa9.25□□□□□ -0.93
USP48-209ENST00000487880 C8orf86Q6ZUL3 223 aa9.25□□□□□ -0.93
USP48-209ENST00000487880 GLIS3Q8NEA6 775 aa9.25□□□□□ -0.93
USP48-209ENST00000487880 NEDD1Q8NHV4 660 aa9.25□□□□□ -0.93
USP48-209ENST00000487880 TRIM33Q9UPN9 1127 aa9.25□□□□□ -0.93
USP48-209ENST00000487880 LILRB5O75023 590 aa9.24□□□□□ -0.93
USP48-209ENST00000487880 GADD45BO75293 160 aaPredicted RBP9.24□□□□□ -0.93
USP48-209ENST00000487880 ZNF326Q5BKZ1 582 aaKnown RBP9.24□□□□□ -0.93
USP48-209ENST00000487880 CEP135Q66GS9 1140 aa9.24□□□□□ -0.93
USP48-209ENST00000487880 ILDR2Q71H61 639 aa9.24□□□□□ -0.93
USP48-209ENST00000487880 FRMD6Q96NE9 622 aa9.24□□□□□ -0.93
USP48-209ENST00000487880 BCO2Q9BYV7 579 aa9.24□□□□□ -0.93
USP48-209ENST00000487880 EHD4Q9H223 541 aa9.24□□□□□ -0.93
USP48-209ENST00000487880 LIN7BQ9HAP6 207 aa9.24□□□□□ -0.93
USP48-209ENST00000487880 PARP2Q9UGN5 583 aa9.24□□□□□ -0.93
USP48-209ENST00000487880 GIPC1O14908 333 aa9.23□□□□□ -0.93
USP48-209ENST00000487880 NID1P14543 1247 aa9.23□□□□□ -0.93
USP48-209ENST00000487880 DAB2P98082 770 aa9.23□□□□□ -0.93
USP48-209ENST00000487880 LINC00114Q6XXX2 140 aa9.23□□□□□ -0.93
USP48-209ENST00000487880 TMC4Q7Z404 712 aa9.23□□□□□ -0.93
USP48-209ENST00000487880 OSBPL7Q9BZF2 842 aa9.23□□□□□ -0.93
USP48-209ENST00000487880 ADAM19Q9H013 955 aa9.23□□□□□ -0.93
USP48-209ENST00000487880 ABCB6Q9NP58 842 aa9.23□□□□□ -0.93
USP48-209ENST00000487880 TRAK1Q9UPV9 953 aa9.23□□□□□ -0.93
USP48-209ENST00000487880 SPG7Q9UQ90 795 aa9.23□□□□□ -0.93
USP48-209ENST00000487880 BAG6P46379 1132 aa9.22□□□□□ -0.93
USP48-209ENST00000487880 SNRPNP63162 240 aaKnown RBP9.22□□□□□ -0.93
USP48-209ENST00000487880 CACTIN-AS1Q8N1I8 211 aa9.22□□□□□ -0.93
USP48-209ENST00000487880 SRCIN1Q9C0H9 1055 aa9.22□□□□□ -0.93
USP48-209ENST00000487880 PTPRAP18433 802 aa9.21□□□□□ -0.94
USP48-209ENST00000487880 GRIA4P48058 902 aa9.21□□□□□ -0.94
USP48-209ENST00000487880 NXPE4Q6UWF7 544 aa9.21□□□□□ -0.94
USP48-209ENST00000487880 C12orf49Q9H741 205 aa9.21□□□□□ -0.94
USP48-209ENST00000487880 SOX13Q9UN79 622 aa9.21□□□□□ -0.94
USP48-209ENST00000487880 ADAMTS8Q9UP79 889 aa9.21□□□□□ -0.94
USP48-209ENST00000487880 METTL12A8MUP2 240 aa9.2□□□□□ -0.94
USP48-209ENST00000487880 ITPKAP23677 461 aa9.2□□□□□ -0.94
USP48-209ENST00000487880 GDF6Q6KF10 455 aaPredicted RBP9.2□□□□□ -0.94
USP48-209ENST00000487880 RRAGCQ9HB90 399 aa9.2□□□□□ -0.94
USP48-209ENST00000487880 AK5Q9Y6K8 562 aa9.2□□□□□ -0.94
USP48-209ENST00000487880 TMEM238LA0A1B0GVL6 79 aa9.19□□□□□ -0.94
USP48-209ENST00000487880 XPCQ01831 940 aaPredicted RBP9.19□□□□□ -0.94
USP48-209ENST00000487880 PTPN12Q05209 780 aaKnown RBP9.19□□□□□ -0.94
USP48-209ENST00000487880 MRPL58Q14197 206 aaKnown RBP9.19□□□□□ -0.94
USP48-209ENST00000487880 C3orf58Q8NDZ4 430 aa9.19□□□□□ -0.94
USP48-209ENST00000487880 BSNDQ8WZ55 320 aa9.19□□□□□ -0.94
USP48-209ENST00000487880 TRIM11Q96F44 468 aa9.19□□□□□ -0.94
USP48-209ENST00000487880 FAM161BQ96MY7 647 aa9.19□□□□□ -0.94
USP48-209ENST00000487880 LACRTQ9GZZ8 138 aa9.19□□□□□ -0.94
USP48-209ENST00000487880 GNB5O14775 395 aa9.18□□□□□ -0.94
USP48-209ENST00000487880 PSMD2Q13200 908 aa9.18□□□□□ -0.94
USP48-209ENST00000487880 SPRED3Q2MJR0 410 aa9.18□□□□□ -0.94
USP48-209ENST00000487880 MSL1Q68DK7 614 aa9.18□□□□□ -0.94
USP48-209ENST00000487880 VN1R5Q7Z5H4 357 aa9.18□□□□□ -0.94
USP48-209ENST00000487880 IL22RA1Q8N6P7 574 aa9.18□□□□□ -0.94
USP48-209ENST00000487880 FAM8A1Q9UBU6 413 aa9.18□□□□□ -0.94
USP48-209ENST00000487880 A0A096LPE4 126 aa9.17□□□□□ -0.94
USP48-209ENST00000487880 A0A1W2PPZ6 126 aa9.17□□□□□ -0.94
USP48-209ENST00000487880 UNCXA6NJT0 531 aa9.17□□□□□ -0.94
USP48-209ENST00000487880 EPHA1P21709 976 aa9.17□□□□□ -0.94
USP48-209ENST00000487880 EIF4BP23588 611 aaKnown RBP9.17□□□□□ -0.94
USP48-209ENST00000487880 CDC27P30260 824 aa9.17□□□□□ -0.94
USP48-209ENST00000487880 WFDC8Q8IUA0 241 aa9.17□□□□□ -0.94
USP48-209ENST00000487880 ASAP3Q8TDY4 903 aa9.17□□□□□ -0.94
USP48-209ENST00000487880 MUC3BQ9H195 1237 aa9.17□□□□□ -0.94
USP48-209ENST00000487880 SH2B1Q9NRF2 756 aaPredicted RBP9.17□□□□□ -0.94
USP48-209ENST00000487880 MKL2Q9ULH7 1088 aa9.17□□□□□ -0.94
USP48-209ENST00000487880 XRCC5P13010 732 aaKnown RBP9.16□□□□□ -0.94
USP48-209ENST00000487880 ZNF576Q9H609 170 aa9.16□□□□□ -0.94
USP48-209ENST00000487880 SORBS3O60504 671 aa9.15□□□□□ -0.94
USP48-209ENST00000487880 VAMP1P23763 118 aa9.15□□□□□ -0.94
USP48-209ENST00000487880 GSTT1P30711 240 aa9.15□□□□□ -0.94
USP48-209ENST00000487880 FCGRTP55899 365 aa9.15□□□□□ -0.94
USP48-209ENST00000487880 ANKRD24Q8TF21 1146 aa9.15□□□□□ -0.94
USP48-209ENST00000487880 ZNF428Q96B54 188 aa9.15□□□□□ -0.94
USP48-209ENST00000487880 PPP4R2Q9NY27 417 aa9.15□□□□□ -0.94
USP48-209ENST00000487880 PPME1Q9Y570 386 aa9.15□□□□□ -0.94
USP48-209ENST00000487880 CNTNAP5Q8WYK1 1306 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms