RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 PROSER3Q2NL68 480 aa12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 OTUD7BQ6GQQ9 843 aa12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 USP17L1Q7RTZ2 530 aa12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 WNK4Q96J92 1243 aa12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 ANKIB1Q9P2G1 1089 aa12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 GGA1Q9UJY5 639 aa12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 NUDCQ9Y266 331 aa12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 VCANP13611 3396 aa12.78□□□□□ -0.36
SMARCB1-206ENST00000477836 RPS8P62241 208 aaKnown RBP12.78□□□□□ -0.36
SMARCB1-206ENST00000477836 COPS6Q7L5N1 327 aa12.78□□□□□ -0.36
SMARCB1-206ENST00000477836 FAM89AQ96GI7 184 aa12.78□□□□□ -0.36
SMARCB1-206ENST00000477836 CFAP53Q96M91 514 aa12.78□□□□□ -0.36
SMARCB1-206ENST00000477836 PRO3102Q9H379 93 aa12.78□□□□□ -0.36
SMARCB1-206ENST00000477836 PODXL2Q9NZ53 605 aa12.78□□□□□ -0.36
SMARCB1-206ENST00000477836 SOX1O00570 391 aaPredicted RBP12.77□□□□□ -0.37
SMARCB1-206ENST00000477836 SASH1O94885 1247 aa12.77□□□□□ -0.37
SMARCB1-206ENST00000477836 ARHGEF6Q15052 776 aa12.77□□□□□ -0.37
SMARCB1-206ENST00000477836 OGFOD1Q8N543 542 aa12.77□□□□□ -0.37
SMARCB1-206ENST00000477836 SH3TC2Q8TF17 1288 aa12.77□□□□□ -0.37
SMARCB1-206ENST00000477836 LRCH3Q96II8 777 aa12.77□□□□□ -0.37
SMARCB1-206ENST00000477836 CLMNQ96JQ2 1002 aa12.77□□□□□ -0.37
SMARCB1-206ENST00000477836 RTL5Q5HYW3 569 aaPredicted RBP12.76□□□□□ -0.37
SMARCB1-206ENST00000477836 APOBEC3FQ8IUX4 373 aaKnown RBP12.76□□□□□ -0.37
SMARCB1-206ENST00000477836 XAGE3Q8WTP9 111 aa12.76□□□□□ -0.37
SMARCB1-206ENST00000477836 FBXW7Q969H0 707 aa12.76□□□□□ -0.37
SMARCB1-206ENST00000477836 MXD3Q9BW11 206 aa12.76□□□□□ -0.37
SMARCB1-206ENST00000477836 LAMB1P07942 1786 aa12.76□□□□□ -0.37
SMARCB1-206ENST00000477836 PODNQ7Z5L7 613 aa12.75□□□□□ -0.37
SMARCB1-206ENST00000477836 PTPN18Q99952 460 aa12.75□□□□□ -0.37
SMARCB1-206ENST00000477836 COL25A1Q9BXS0 654 aaPredicted RBP12.75□□□□□ -0.37
SMARCB1-206ENST00000477836 MAP3K11Q16584 847 aa12.74□□□□□ -0.37
SMARCB1-206ENST00000477836 DLG5Q8TDM6 1919 aa12.74□□□□□ -0.37
SMARCB1-206ENST00000477836 PPP1R12BO60237 982 aaPredicted RBP12.73□□□□□ -0.37
SMARCB1-206ENST00000477836 GJA5P36382 358 aa12.73□□□□□ -0.37
SMARCB1-206ENST00000477836 DACT2Q5SW24 774 aa12.73□□□□□ -0.37
SMARCB1-206ENST00000477836 SHISA4Q96DD7 197 aa12.73□□□□□ -0.37
SMARCB1-206ENST00000477836 HTATIP2Q9BUP3 242 aa12.73□□□□□ -0.37
SMARCB1-206ENST00000477836 SEC31BQ9NQW1 1179 aa12.73□□□□□ -0.37
SMARCB1-206ENST00000477836 NR2E3Q9Y5X4 410 aa12.73□□□□□ -0.37
SMARCB1-206ENST00000477836 EYSQ5T1H1 3165 aa12.73□□□□□ -0.37
SMARCB1-206ENST00000477836 A0A1W2PPC1 479 aa12.72□□□□□ -0.37
SMARCB1-206ENST00000477836 ATP5J2-PTCD1G3V325 749 aa12.72□□□□□ -0.37
SMARCB1-206ENST00000477836 IRS4O14654 1257 aaPredicted RBP12.72□□□□□ -0.37
SMARCB1-206ENST00000477836 DEFB129Q9H1M3 183 aa12.72□□□□□ -0.37
SMARCB1-206ENST00000477836 TSPYL4Q9UJ04 414 aa12.72□□□□□ -0.37
SMARCB1-206ENST00000477836 SPTBN5Q9NRC6 3674 aaKnown RBP12.72□□□□□ -0.37
SMARCB1-206ENST00000477836 XDHP47989 1333 aa12.71□□□□□ -0.37
SMARCB1-206ENST00000477836 MYO3BQ8WXR4 1341 aa12.71□□□□□ -0.37
SMARCB1-206ENST00000477836 TESPA1A2RU30 521 aaPredicted RBP12.71□□□□□ -0.37
SMARCB1-206ENST00000477836 ZBTB7BO15156 539 aaPredicted RBP12.71□□□□□ -0.37
SMARCB1-206ENST00000477836 MTFR1Q15390 333 aa12.71□□□□□ -0.37
SMARCB1-206ENST00000477836 ZFYVE28Q9HCC9 887 aa12.71□□□□□ -0.37
SMARCB1-206ENST00000477836 COL1A1P02452 1464 aaPredicted RBP12.71□□□□□ -0.38
SMARCB1-206ENST00000477836 SSC5DA1L4H1 1573 aa12.7□□□□□ -0.38
SMARCB1-206ENST00000477836 NEFMP07197 916 aa12.7□□□□□ -0.38
SMARCB1-206ENST00000477836 ATP2B4P23634 1241 aa12.7□□□□□ -0.38
SMARCB1-206ENST00000477836 TAF1CQ15572 869 aaPredicted RBP12.7□□□□□ -0.38
SMARCB1-206ENST00000477836 DEFB123Q8N688 67 aa12.7□□□□□ -0.38
SMARCB1-206ENST00000477836 ISCA1Q9BUE6 129 aa12.7□□□□□ -0.38
SMARCB1-206ENST00000477836 ARHGAP39Q9C0H5 1083 aa12.7□□□□□ -0.38
SMARCB1-206ENST00000477836 LAMA2P24043 3122 aaKnown RBP12.7□□□□□ -0.38
SMARCB1-206ENST00000477836 UNCXA6NJT0 531 aa12.69□□□□□ -0.38
SMARCB1-206ENST00000477836 IREB2P48200 963 aaKnown RBP12.69□□□□□ -0.38
SMARCB1-206ENST00000477836 STRIP1Q5VSL9 837 aa12.69□□□□□ -0.38
SMARCB1-206ENST00000477836 ANKRD13DQ6ZTN6 518 aa12.69□□□□□ -0.38
SMARCB1-206ENST00000477836 Q7L0L9 218 aa12.69□□□□□ -0.38
SMARCB1-206ENST00000477836 KIAA0825Q8IV33 1275 aa12.69□□□□□ -0.38
SMARCB1-206ENST00000477836 NKX2-3Q8TAU0 364 aa12.69□□□□□ -0.38
SMARCB1-206ENST00000477836 STAP2Q9UGK3 403 aa12.69□□□□□ -0.38
SMARCB1-206ENST00000477836 STXBP5LQ9Y2K9 1186 aa12.69□□□□□ -0.38
SMARCB1-206ENST00000477836 ZSWIM8A7E2V4 1837 aa12.69□□□□□ -0.38
SMARCB1-206ENST00000477836 ZNF646O15015 1829 aaPredicted RBP12.69□□□□□ -0.38
SMARCB1-206ENST00000477836 ECM2O94769 699 aaPredicted RBP12.68□□□□□ -0.38
SMARCB1-206ENST00000477836 MMP14P50281 582 aa12.68□□□□□ -0.38
SMARCB1-206ENST00000477836 KIF22Q14807 665 aa12.68□□□□□ -0.38
SMARCB1-206ENST00000477836 SUPT20HL1Q3ZLR7 823 aa12.68□□□□□ -0.38
SMARCB1-206ENST00000477836 UBE2Q1Q7Z7E8 422 aa12.68□□□□□ -0.38
SMARCB1-206ENST00000477836 ANKRD13AQ8IZ07 590 aa12.68□□□□□ -0.38
SMARCB1-206ENST00000477836 PLBD2Q8NHP8 589 aa12.68□□□□□ -0.38
SMARCB1-206ENST00000477836 OPTNQ96CV9 577 aa12.68□□□□□ -0.38
SMARCB1-206ENST00000477836 ZBED3Q96IU2 234 aaPredicted RBP12.68□□□□□ -0.38
SMARCB1-206ENST00000477836 CCDC85AQ96PX6 553 aaPredicted RBP12.68□□□□□ -0.38
SMARCB1-206ENST00000477836 ELP3Q9H9T3 547 aa12.68□□□□□ -0.38
SMARCB1-206ENST00000477836 USP2O75604 605 aaPredicted RBP12.67□□□□□ -0.38
SMARCB1-206ENST00000477836 GJA8P48165 433 aa12.67□□□□□ -0.38
SMARCB1-206ENST00000477836 NBPF12Q5TAG4 269 aaPredicted RBP12.67□□□□□ -0.38
SMARCB1-206ENST00000477836 BRI3BPQ8WY22 251 aa12.67□□□□□ -0.38
SMARCB1-206ENST00000477836 MS4A4AQ96JQ5 239 aa12.67□□□□□ -0.38
SMARCB1-206ENST00000477836 PPP2R3BQ9Y5P8 575 aa12.67□□□□□ -0.38
SMARCB1-206ENST00000477836 MED23Q9ULK4 1368 aa12.67□□□□□ -0.38
SMARCB1-206ENST00000477836 CCL15-CCL14A0A0B4J2E2 113 aa12.66□□□□□ -0.38
SMARCB1-206ENST00000477836 EVI5O60447 810 aa12.66□□□□□ -0.38
SMARCB1-206ENST00000477836 LACTBP83111 547 aaPredicted RBP12.66□□□□□ -0.38
SMARCB1-206ENST00000477836 DLGAP5Q15398 846 aa12.66□□□□□ -0.38
SMARCB1-206ENST00000477836 NFE2L2Q16236 605 aa12.66□□□□□ -0.38
SMARCB1-206ENST00000477836 CCL15Q16663 113 aa12.66□□□□□ -0.38
SMARCB1-206ENST00000477836 CCDC152Q4G0S7 254 aa12.66□□□□□ -0.38
SMARCB1-206ENST00000477836 TTLL5Q6EMB2 1281 aa12.66□□□□□ -0.38
SMARCB1-206ENST00000477836 ANKRD18AQ8IVF6 992 aa12.66□□□□□ -0.38
SMARCB1-206ENST00000477836 FAM43AQ8N2R8 423 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms