RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 GADD45BO75293 160 aaPredicted RBP16.92■□□□□ 0.3
HDAC6-220ENST00000477528 ITGA6P23229 1130 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 SYKP43405 635 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 IKQ13123 557 aaPredicted RBP16.92■□□□□ 0.3
HDAC6-220ENST00000477528 APPBP2Q92624 585 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 TMEM94Q12767 1356 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 ADGRL3Q9HAR2 1447 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 FSD2A1L4K1 749 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 ME3Q16798 604 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 ACSBG1Q96GR2 724 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 ZNF830Q96NB3 372 aaPredicted RBP16.92■□□□□ 0.3
HDAC6-220ENST00000477528 OVOS2A0A0J9YW53 1432 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 OVOS2Q6IE36 1432 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 ESR2Q92731 530 aa16.91■□□□□ 0.3
HDAC6-220ENST00000477528 NGLY1Q96IV0 654 aa16.91■□□□□ 0.3
HDAC6-220ENST00000477528 NCAPD2Q15021 1401 aa16.91■□□□□ 0.3
HDAC6-220ENST00000477528 SPTLC2O15270 562 aa16.91■□□□□ 0.3
HDAC6-220ENST00000477528 CUL4AQ13619 759 aa16.91■□□□□ 0.3
HDAC6-220ENST00000477528 NOLC1Q14978 699 aaKnown RBP eCLIP16.91■□□□□ 0.3
HDAC6-220ENST00000477528 TTLL5Q6EMB2 1281 aa16.91■□□□□ 0.3
HDAC6-220ENST00000477528 BRAPQ7Z569 592 aa16.91■□□□□ 0.3
HDAC6-220ENST00000477528 USP32Q8NFA0 1604 aa16.91■□□□□ 0.3
HDAC6-220ENST00000477528 TOP1P11387 765 aaKnown RBP16.91■□□□□ 0.3
HDAC6-220ENST00000477528 RTN1Q16799 776 aa16.91■□□□□ 0.3
HDAC6-220ENST00000477528 HELBQ8NG08 1087 aaPredicted RBP16.91■□□□□ 0.3
HDAC6-220ENST00000477528 EDC3Q96F86 508 aaKnown RBP16.91■□□□□ 0.3
HDAC6-220ENST00000477528 PRIMPOLQ96LW4 560 aa16.91■□□□□ 0.3
HDAC6-220ENST00000477528 TNNT1P13805 278 aa16.91■□□□□ 0.3
HDAC6-220ENST00000477528 ATP2B2Q01814 1243 aa16.91■□□□□ 0.3
HDAC6-220ENST00000477528 ZNHIT6Q9NWK9 470 aaKnown RBP16.91■□□□□ 0.3
HDAC6-220ENST00000477528 DSCC1Q9BVC3 393 aa16.9■□□□□ 0.3
HDAC6-220ENST00000477528 CRB1P82279 1406 aa16.9■□□□□ 0.3
HDAC6-220ENST00000477528 KIF18AQ8NI77 898 aa16.9■□□□□ 0.3
HDAC6-220ENST00000477528 SLAIN2Q9P270 581 aa16.9■□□□□ 0.3
HDAC6-220ENST00000477528 CTDP1Q9Y5B0 961 aaPredicted RBP16.9■□□□□ 0.3
HDAC6-220ENST00000477528 PRAMEF22A3QJZ6 481 aa16.9■□□□□ 0.3
HDAC6-220ENST00000477528 PDE4BQ07343 736 aa16.9■□□□□ 0.3
HDAC6-220ENST00000477528 DNAJC10Q8IXB1 793 aa16.9■□□□□ 0.3
HDAC6-220ENST00000477528 RASEFQ8IZ41 740 aa16.9■□□□□ 0.3
HDAC6-220ENST00000477528 TCEAL9Q9UHQ7 104 aa16.9■□□□□ 0.3
HDAC6-220ENST00000477528 NLRP5P59047 1200 aa16.9■□□□□ 0.3
HDAC6-220ENST00000477528 TCIRG1Q13488 830 aa16.9■□□□□ 0.3
HDAC6-220ENST00000477528 KANK3Q6NY19 840 aa16.9■□□□□ 0.3
HDAC6-220ENST00000477528 ZNF444Q8N0Y2 327 aaPredicted RBP16.9■□□□□ 0.3
HDAC6-220ENST00000477528 HMGB2P26583 209 aaKnown RBP16.89■□□□□ 0.29
HDAC6-220ENST00000477528 SPTY2D1Q68D10 685 aaPredicted RBP16.89■□□□□ 0.29
HDAC6-220ENST00000477528 C16orf45Q96MC5 204 aaPredicted RBP16.89■□□□□ 0.29
HDAC6-220ENST00000477528 CCDC186Q7Z3E2 898 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 MAP4K1Q92918 833 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 HAUS7Q99871 368 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 CRNKL1Q9BZJ0 848 aaKnown RBP16.89■□□□□ 0.29
HDAC6-220ENST00000477528 TTC12Q9H892 705 aaPredicted RBP16.89■□□□□ 0.29
HDAC6-220ENST00000477528 ZSCAN12O43309 604 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 PDE8AO60658 829 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 OFD1O75665 1012 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 KIF5BP33176 963 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 EPS15P42566 896 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 MAGEB6Q8N7X4 407 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 FAM173BQ6P4H8 233 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 TMC6Q7Z403 805 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 FAM177A1Q8N128 213 aaPredicted RBP16.89■□□□□ 0.29
HDAC6-220ENST00000477528 ACBD3Q9H3P7 528 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 TMEM131LA2VDJ0 1609 aa16.89■□□□□ 0.29
HDAC6-220ENST00000477528 CDC37L1Q7L3B6 337 aa16.88■□□□□ 0.29
HDAC6-220ENST00000477528 TECPR2O15040 1411 aa16.88■□□□□ 0.29
HDAC6-220ENST00000477528 NAP1L1P55209 391 aaKnown RBP16.88■□□□□ 0.29
HDAC6-220ENST00000477528 TTLL7Q6ZT98 887 aa16.88■□□□□ 0.29
HDAC6-220ENST00000477528 NBPF5PQ86XG9 351 aaPredicted RBP16.88■□□□□ 0.29
HDAC6-220ENST00000477528 PDCL2Q8N4E4 241 aa16.88■□□□□ 0.29
HDAC6-220ENST00000477528 PI4K2BQ8TCG2 481 aa16.88■□□□□ 0.29
HDAC6-220ENST00000477528 IQSEC3Q9UPP2 1182 aaPredicted RBP16.88■□□□□ 0.29
HDAC6-220ENST00000477528 DYNC1I1O14576 645 aa16.88■□□□□ 0.29
HDAC6-220ENST00000477528 LDHCP07864 332 aa16.88■□□□□ 0.29
HDAC6-220ENST00000477528 ARHGEF28Q8N1W1 1705 aaKnown RBP16.88■□□□□ 0.29
HDAC6-220ENST00000477528 ADAMTS13Q76LX8 1427 aa16.88■□□□□ 0.29
HDAC6-220ENST00000477528 PTPRUQ92729 1446 aa16.88■□□□□ 0.29
HDAC6-220ENST00000477528 PUM3Q15397 648 aaKnown RBP16.87■□□□□ 0.29
HDAC6-220ENST00000477528 KLHL10Q6JEL2 608 aa16.87■□□□□ 0.29
HDAC6-220ENST00000477528 GPT2Q8TD30 523 aa16.87■□□□□ 0.29
HDAC6-220ENST00000477528 CEP89Q96ST8 783 aa16.87■□□□□ 0.29
HDAC6-220ENST00000477528 CDCA7Q9BWT1 371 aaPredicted RBP16.87■□□□□ 0.29
HDAC6-220ENST00000477528 SH3TC1Q8TE82 1336 aa16.87■□□□□ 0.29
HDAC6-220ENST00000477528 TSPY2A6NKD2 308 aa16.87■□□□□ 0.29
HDAC6-220ENST00000477528 GAS2L3Q86XJ1 694 aa16.87■□□□□ 0.29
HDAC6-220ENST00000477528 LEO1Q8WVC0 666 aaPredicted RBP16.87■□□□□ 0.29
HDAC6-220ENST00000477528 GPAA1O43292 621 aa16.87■□□□□ 0.29
HDAC6-220ENST00000477528 SEC63Q9UGP8 760 aaKnown RBP16.87■□□□□ 0.29
HDAC6-220ENST00000477528 NAA16Q6N069 864 aaPredicted RBP16.87■□□□□ 0.29
HDAC6-220ENST00000477528 GTF3C6Q969F1 213 aa16.87■□□□□ 0.29
HDAC6-220ENST00000477528 TPCN1Q9ULQ1 816 aa16.87■□□□□ 0.29
HDAC6-220ENST00000477528 CCDC194A0A1B0GVG4 234 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 MARCKSP29966 332 aaPredicted RBP16.86■□□□□ 0.29
HDAC6-220ENST00000477528 PARP10Q53GL7 1025 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 CCDC150Q8NCX0 1101 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 RPGRQ92834 1020 aaKnown RBP16.86■□□□□ 0.29
HDAC6-220ENST00000477528 NLRP3Q96P20 1036 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 MTMR6Q9Y217 621 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 COL3A1P02461 1466 aaPredicted RBP16.86■□□□□ 0.29
HDAC6-220ENST00000477528 BAG3O95817 575 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 KRT18P05783 430 aaKnown RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms