RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MX2P20592 715 aa9.47□□□□□ -0.89
CCDC88A-213ENST00000476903 Q8N3U1 123 aa9.47□□□□□ -0.89
CCDC88A-213ENST00000476903 GAS2L1Q99501 681 aaPredicted RBP9.47□□□□□ -0.89
CCDC88A-213ENST00000476903 CARD10Q9BWT7 1032 aa9.47□□□□□ -0.89
CCDC88A-213ENST00000476903 MYOM1P52179 1685 aa9.47□□□□□ -0.89
CCDC88A-213ENST00000476903 FAM208AQ9UK61 1670 aaKnown RBP9.47□□□□□ -0.89
CCDC88A-213ENST00000476903 CCDC7Q96M83 1385 aa9.47□□□□□ -0.89
CCDC88A-213ENST00000476903 OVOS2A0A0G2JMS6 1433 aa9.47□□□□□ -0.89
CCDC88A-213ENST00000476903 SRCAPQ6ZRS2 3230 aa9.46□□□□□ -0.89
CCDC88A-213ENST00000476903 SPATA31C2B4DYI2 1134 aa9.46□□□□□ -0.9
CCDC88A-213ENST00000476903 MEN1O00255 615 aa9.46□□□□□ -0.9
CCDC88A-213ENST00000476903 DDB1Q16531 1140 aa9.46□□□□□ -0.9
CCDC88A-213ENST00000476903 NBPF10Q6P3W6 841 aaKnown RBP9.46□□□□□ -0.9
CCDC88A-213ENST00000476903 NBPF15Q8N660 670 aa9.46□□□□□ -0.9
CCDC88A-213ENST00000476903 CCER1Q8TC90 406 aaPredicted RBP9.46□□□□□ -0.9
CCDC88A-213ENST00000476903 COG3Q96JB2 828 aa9.46□□□□□ -0.9
CCDC88A-213ENST00000476903 PARD3Q8TEW0 1356 aa9.46□□□□□ -0.9
CCDC88A-213ENST00000476903 RREB1Q92766 1687 aa9.45□□□□□ -0.9
CCDC88A-213ENST00000476903 RGPD3A6NKT7 1758 aaPredicted RBP9.45□□□□□ -0.9
CCDC88A-213ENST00000476903 RGPD4Q7Z3J3 1758 aa9.45□□□□□ -0.9
CCDC88A-213ENST00000476903 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.45□□□□□ -0.9
CCDC88A-213ENST00000476903 APBA3O96018 575 aa9.45□□□□□ -0.9
CCDC88A-213ENST00000476903 HOXB4P17483 251 aaPredicted RBP9.45□□□□□ -0.9
CCDC88A-213ENST00000476903 ERVK-9P63128 1117 aa9.45□□□□□ -0.9
CCDC88A-213ENST00000476903 WDR44Q5JSH3 913 aa9.45□□□□□ -0.9
CCDC88A-213ENST00000476903 TRERF1Q96PN7 1200 aa9.45□□□□□ -0.9
CCDC88A-213ENST00000476903 OXCT2Q9BYC2 517 aaPredicted RBP9.45□□□□□ -0.9
CCDC88A-213ENST00000476903 KRTAP9-2Q9BYQ4 174 aa9.45□□□□□ -0.9
CCDC88A-213ENST00000476903 USP17L8P0C7I0 530 aa9.44□□□□□ -0.9
CCDC88A-213ENST00000476903 TRIM34Q9BYJ4 488 aa9.44□□□□□ -0.9
CCDC88A-213ENST00000476903 NUP188Q5SRE5 1749 aa9.44□□□□□ -0.9
CCDC88A-213ENST00000476903 KAT6BQ8WYB5 2073 aa9.44□□□□□ -0.9
CCDC88A-213ENST00000476903 LRP5O75197 1615 aa9.43□□□□□ -0.9
CCDC88A-213ENST00000476903 BCL9O00512 1426 aa9.43□□□□□ -0.9
CCDC88A-213ENST00000476903 TNS2Q63HR2 1409 aa9.43□□□□□ -0.9
CCDC88A-213ENST00000476903 EXOC5O00471 708 aa9.43□□□□□ -0.9
CCDC88A-213ENST00000476903 EZH2Q15910 746 aaKnown RBP9.43□□□□□ -0.9
CCDC88A-213ENST00000476903 ANKRD24Q8TF21 1146 aa9.43□□□□□ -0.9
CCDC88A-213ENST00000476903 IP6K1Q92551 441 aa9.43□□□□□ -0.9
CCDC88A-213ENST00000476903 CAMKK2Q96RR4 588 aa9.43□□□□□ -0.9
CCDC88A-213ENST00000476903 NLRP2Q9NX02 1062 aa9.43□□□□□ -0.9
CCDC88A-213ENST00000476903 RGPD2P0DJD1 1756 aa9.42□□□□□ -0.9
CCDC88A-213ENST00000476903 MAP3K19Q56UN5 1328 aa9.42□□□□□ -0.9
CCDC88A-213ENST00000476903 FURINP09958 794 aa9.42□□□□□ -0.9
CCDC88A-213ENST00000476903 CLN3Q13286 438 aa9.42□□□□□ -0.9
CCDC88A-213ENST00000476903 UBAP2LQ14157 1087 aaKnown RBP9.42□□□□□ -0.9
CCDC88A-213ENST00000476903 CFHR5Q9BXR6 569 aa9.42□□□□□ -0.9
CCDC88A-213ENST00000476903 NUCKS1Q9H1E3 243 aaKnown RBP9.42□□□□□ -0.9
CCDC88A-213ENST00000476903 RTL1A6NKG5 1358 aa9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 FYB1O15117 783 aa9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 F11P03951 625 aa9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 IL2RBP14784 551 aa9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 MAP2K3P46734 347 aa9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 AMPHP49418 695 aa9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 EIF4G2P78344 907 aaKnown RBP eCLIP9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 CC2D2BQ6DHV5 1058 aa9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 MARCH10Q8NA82 808 aaPredicted RBP9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 PNMA1Q8ND90 353 aa9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 KLRG1Q96E93 195 aa9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 GGNBP2Q9H3C7 697 aa9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 NSFL1CQ9UNZ2 370 aaKnown RBP9.41□□□□□ -0.9
CCDC88A-213ENST00000476903 NSD3Q9BZ95 1437 aa9.4□□□□□ -0.9
CCDC88A-213ENST00000476903 NHSQ6T4R5 1651 aa9.4□□□□□ -0.9
CCDC88A-213ENST00000476903 HOXC9P31274 260 aa9.4□□□□□ -0.9
CCDC88A-213ENST00000476903 SCTRP47872 440 aa9.4□□□□□ -0.9
CCDC88A-213ENST00000476903 SLC27A3Q5K4L6 730 aa9.4□□□□□ -0.9
CCDC88A-213ENST00000476903 LINC00114Q6XXX2 140 aa9.4□□□□□ -0.9
CCDC88A-213ENST00000476903 LTV1Q96GA3 475 aaPredicted RBP9.4□□□□□ -0.9
CCDC88A-213ENST00000476903 MAP2P11137 1827 aaKnown RBP9.4□□□□□ -0.91
CCDC88A-213ENST00000476903 ANKRD26Q9UPS8 1709 aa9.39□□□□□ -0.91
CCDC88A-213ENST00000476903 KRTAP9-6A0A140TA67 174 aa9.39□□□□□ -0.91
CCDC88A-213ENST00000476903 PLSCR1O15162 318 aa9.39□□□□□ -0.91
CCDC88A-213ENST00000476903 TRAK2O60296 914 aa9.39□□□□□ -0.91
CCDC88A-213ENST00000476903 R3HDM1Q15032 1099 aaKnown RBP9.39□□□□□ -0.91
CCDC88A-213ENST00000476903 ALYREFQ86V81 257 aaKnown RBP9.39□□□□□ -0.91
CCDC88A-213ENST00000476903 PSMG3-AS1Q96PY0 264 aa9.39□□□□□ -0.91
CCDC88A-213ENST00000476903 FAM117AQ9C073 453 aa9.39□□□□□ -0.91
CCDC88A-213ENST00000476903 TIMMDC1Q9NPL8 285 aa9.39□□□□□ -0.91
CCDC88A-213ENST00000476903 MKL2Q9ULH7 1088 aa9.39□□□□□ -0.91
CCDC88A-213ENST00000476903 SMG6Q86US8 1419 aaKnown RBP9.39□□□□□ -0.91
CCDC88A-213ENST00000476903 HSPA5P11021 654 aaKnown RBP9.38□□□□□ -0.91
CCDC88A-213ENST00000476903 FBLN1P23142 703 aa9.38□□□□□ -0.91
CCDC88A-213ENST00000476903 ITGB7P26010 798 aa9.38□□□□□ -0.91
CCDC88A-213ENST00000476903 RRS1Q15050 365 aaKnown RBP9.38□□□□□ -0.91
CCDC88A-213ENST00000476903 NLRP3Q96P20 1036 aa9.38□□□□□ -0.91
CCDC88A-213ENST00000476903 OSBPL3Q9H4L5 887 aa9.38□□□□□ -0.91
CCDC88A-213ENST00000476903 SUV39H2Q9H5I1 410 aa9.38□□□□□ -0.91
CCDC88A-213ENST00000476903 BTAF1O14981 1849 aa9.38□□□□□ -0.91
CCDC88A-213ENST00000476903 KIF24Q5T7B8 1368 aa9.37□□□□□ -0.91
CCDC88A-213ENST00000476903 CGNL1Q0VF96 1302 aa9.37□□□□□ -0.91
CCDC88A-213ENST00000476903 SHANK3Q9BYB0 1731 aa9.37□□□□□ -0.91
CCDC88A-213ENST00000476903 TAS1R3Q7RTX0 852 aa9.37□□□□□ -0.91
CCDC88A-213ENST00000476903 POLR3GLQ9BT43 218 aa9.37□□□□□ -0.91
CCDC88A-213ENST00000476903 FLT4P35916 1363 aa9.37□□□□□ -0.91
CCDC88A-213ENST00000476903 ZBBXA8MT70 800 aa9.36□□□□□ -0.91
CCDC88A-213ENST00000476903 FBXO45P0C2W1 286 aa9.36□□□□□ -0.91
CCDC88A-213ENST00000476903 PTF1AQ7RTS3 328 aa9.36□□□□□ -0.91
CCDC88A-213ENST00000476903 EDARADDQ8WWZ3 215 aa9.36□□□□□ -0.91
CCDC88A-213ENST00000476903 PCDHB9Q9Y5E1 797 aa9.36□□□□□ -0.91
CCDC88A-213ENST00000476903 INSRP06213 1382 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms