RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	EHD4	Q9H223	541 aa		6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	LIN7B	Q9HAP6	207 aa		6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	VTI1B	Q9UEU0	232 aa		6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	WFS1	O76024	890 aa		6.39	□□□□□ -1.39
PTCD3-209	ENST00000472044	XRCC5	P13010	732 aa	Known RBP	6.39	□□□□□ -1.39
PTCD3-209	ENST00000472044	ACPP	P15309	386 aa		6.39	□□□□□ -1.39
PTCD3-209	ENST00000472044	ALAS2	P22557	587 aa		6.39	□□□□□ -1.39
PTCD3-209	ENST00000472044	PTPN12	Q05209	780 aa	Known RBP	6.39	□□□□□ -1.39
PTCD3-209	ENST00000472044	PERM1	Q5SV97	790 aa		6.39	□□□□□ -1.39
PTCD3-209	ENST00000472044	LPIN3	Q9BQK8	851 aa		6.39	□□□□□ -1.39
PTCD3-209	ENST00000472044	RASSF4	Q9H2L5	321 aa		6.39	□□□□□ -1.39
PTCD3-209	ENST00000472044	ZFYVE1	Q9HBF4	777 aa		6.39	□□□□□ -1.39
PTCD3-209	ENST00000472044	ABCB6	Q9NP58	842 aa		6.39	□□□□□ -1.39
PTCD3-209	ENST00000472044	NAGPA	Q9UK23	515 aa		6.39	□□□□□ -1.39
PTCD3-209	ENST00000472044	USP31	Q70CQ4	1352 aa		6.39	□□□□□ -1.39
PTCD3-209	ENST00000472044	TMEM238L	A0A1B0GVL6	79 aa		6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	PDE2A	O00408	941 aa	Predicted RBP	6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	CPB1	P15086	417 aa		6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	EIF2AK2	P19525	551 aa	Known RBP	6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	ITPKA	P23677	461 aa		6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	GSTT1	P30711	240 aa		6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	RANGAP1	P46060	587 aa	Predicted RBP	6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	TBC1D8B	Q0IIM8	1120 aa		6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	TSNAXIP1	Q2TAA8	658 aa		6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	C1orf229	Q6ZS94	237 aa	Predicted RBP	6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	CACTIN-AS1	Q8N1I8	211 aa		6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	C3orf58	Q8NDZ4	430 aa		6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	ZNF775	Q96BV0	537 aa	Predicted RBP	6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	PLD4	Q96BZ4	506 aa		6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	METTL5	Q9NRN9	209 aa	Known RBP	6.38	□□□□□ -1.39
PTCD3-209	ENST00000472044	SCAMP3	O14828	347 aa	Known RBP	6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	OIP5	O43482	229 aa		6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	TRPA1	O75762	1119 aa		6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	SMNDC1	O75940	238 aa	Known RBP eCLIP	6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	USP17L7	P0C7H9	530 aa		6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	GMPR	P36959	345 aa		6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	ST13	P50502	369 aa	Known RBP	6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	ATP11A	P98196	1134 aa		6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	LCE2A	Q5TA79	106 aa	Predicted RBP	6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	KANK3	Q6NY19	840 aa		6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	ELMSAN1	Q6PJG2	1045 aa		6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	C20orf204	Q6ZNR8	217 aa		6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	TMEM87A	Q8NBN3	555 aa		6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	EDARADD	Q8WWZ3	215 aa		6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	POP1	Q99575	1024 aa	Known RBP	6.37	□□□□□ -1.39
PTCD3-209	ENST00000472044	BCR	P11274	1271 aa		6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044	TCF3	P15923	654 aa		6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044	GRIA4	P48058	902 aa		6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044	TAF1C	Q15572	869 aa	Predicted RBP	6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044	CEP135	Q66GS9	1140 aa		6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044	PSAPL1	Q6NUJ1	521 aa		6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044	TREML4	Q6UXN2	200 aa		6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044	GALNT6	Q8NCL4	622 aa		6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044	HHIP	Q96QV1	700 aa		6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044	ADAM19	Q9H013	955 aa		6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044	SMG9	Q9H0W8	520 aa	Known RBP	6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044	PPM1H	Q9ULR3	514 aa		6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044	STARD13	Q9Y3M8	1113 aa		6.36	□□□□□ -1.39
PTCD3-209	ENST00000472044		A0A096LPE4	126 aa		6.35	□□□□□ -1.39
PTCD3-209	ENST00000472044		A0A1W2PPZ6	126 aa		6.35	□□□□□ -1.39
PTCD3-209	ENST00000472044	RGS9	O75916	674 aa	Predicted RBP	6.35	□□□□□ -1.39
PTCD3-209	ENST00000472044	FCGRT	P55899	365 aa		6.35	□□□□□ -1.39
PTCD3-209	ENST00000472044	GRIK5	Q16478	980 aa		6.35	□□□□□ -1.39
PTCD3-209	ENST00000472044	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	6.35	□□□□□ -1.39
PTCD3-209	ENST00000472044	MICALL1	Q8N3F8	863 aa		6.35	□□□□□ -1.39
PTCD3-209	ENST00000472044	BSND	Q8WZ55	320 aa		6.35	□□□□□ -1.39
PTCD3-209	ENST00000472044	BTBD6	Q96KE9	485 aa		6.35	□□□□□ -1.39
PTCD3-209	ENST00000472044	PRDM6	Q9NQX0	595 aa		6.35	□□□□□ -1.39
PTCD3-209	ENST00000472044	CELA2B	P08218	269 aa	Predicted RBP	6.34	□□□□□ -1.39
PTCD3-209	ENST00000472044	FANCC	Q00597	558 aa		6.34	□□□□□ -1.39
PTCD3-209	ENST00000472044	SPRED3	Q2MJR0	410 aa		6.34	□□□□□ -1.39
PTCD3-209	ENST00000472044	DTHD1	Q6ZMT9	781 aa		6.34	□□□□□ -1.39
PTCD3-209	ENST00000472044	SOX13	Q9UN79	622 aa		6.34	□□□□□ -1.39
PTCD3-209	ENST00000472044	METTL12	A8MUP2	240 aa		6.33	□□□□□ -1.4
PTCD3-209	ENST00000472044	ALB	P02768	609 aa		6.33	□□□□□ -1.4
PTCD3-209	ENST00000472044	PTPRA	P18433	802 aa		6.33	□□□□□ -1.4
PTCD3-209	ENST00000472044	MEI1	Q5TIA1	1274 aa		6.33	□□□□□ -1.4
PTCD3-209	ENST00000472044	LYPD4	Q6UWN0	246 aa		6.33	□□□□□ -1.4
PTCD3-209	ENST00000472044	ADAMTSL4	Q6UY14	1074 aa		6.33	□□□□□ -1.4
PTCD3-209	ENST00000472044	CHSY3	Q70JA7	882 aa		6.33	□□□□□ -1.4
PTCD3-209	ENST00000472044	ILDR2	Q71H61	639 aa		6.33	□□□□□ -1.4
PTCD3-209	ENST00000472044	METTL16	Q86W50	562 aa	Known RBP	6.33	□□□□□ -1.4
PTCD3-209	ENST00000472044	NOC4L	Q9BVI4	516 aa	Known RBP	6.33	□□□□□ -1.4
PTCD3-209	ENST00000472044	ZNF576	Q9H609	170 aa		6.33	□□□□□ -1.4
PTCD3-209	ENST00000472044	TRIM33	Q9UPN9	1127 aa		6.33	□□□□□ -1.4
PTCD3-209	ENST00000472044	SHISA8	B8ZZ34	492 aa		6.32	□□□□□ -1.4
PTCD3-209	ENST00000472044	LILRB5	O75023	590 aa		6.32	□□□□□ -1.4
PTCD3-209	ENST00000472044	ZNF76	P36508	570 aa		6.32	□□□□□ -1.4
PTCD3-209	ENST00000472044	HDLBP	Q00341	1268 aa	Known RBP	6.32	□□□□□ -1.4
PTCD3-209	ENST00000472044	VN1R5	Q7Z5H4	357 aa		6.32	□□□□□ -1.4
PTCD3-209	ENST00000472044	ASAP3	Q8TDY4	903 aa		6.32	□□□□□ -1.4
PTCD3-209	ENST00000472044	NUDT8	Q8WV74	236 aa		6.32	□□□□□ -1.4
PTCD3-209	ENST00000472044	RNF34	Q969K3	372 aa		6.32	□□□□□ -1.4
PTCD3-209	ENST00000472044	MUC3B	Q9H195	1237 aa		6.32	□□□□□ -1.4
PTCD3-209	ENST00000472044	CLEC4M	Q9H2X3	399 aa	Predicted RBP	6.32	□□□□□ -1.4
PTCD3-209	ENST00000472044	JPH1	Q9HDC5	661 aa	Predicted RBP	6.32	□□□□□ -1.4
PTCD3-209	ENST00000472044		M0R082	166 aa		6.31	□□□□□ -1.4
PTCD3-209	ENST00000472044	WIPF1	O43516	503 aa		6.31	□□□□□ -1.4
PTCD3-209	ENST00000472044	CDC27	P30260	824 aa		6.31	□□□□□ -1.4
PTCD3-209	ENST00000472044	BAG6	P46379	1132 aa		6.31	□□□□□ -1.4

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