RNA–Protein interactions for RNA: ENST00000469223.5

HDAC6-217, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 796 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-217ENST00000469223 NBPF11Q86T75 865 aa16.7■□□□□ 0.26
HDAC6-217ENST00000469223 NECTIN2Q92692 538 aa16.7■□□□□ 0.26
HDAC6-217ENST00000469223 CLMNQ96JQ2 1002 aa16.7■□□□□ 0.26
HDAC6-217ENST00000469223 TTC28Q96AY4 2481 aa16.7■□□□□ 0.26
HDAC6-217ENST00000469223 PNISRQ8TF01 805 aaKnown RBP16.69■□□□□ 0.26
HDAC6-217ENST00000469223 SHISA4Q96DD7 197 aa16.69■□□□□ 0.26
HDAC6-217ENST00000469223 WTIPA6NIX2 430 aaPredicted RBP16.68■□□□□ 0.26
HDAC6-217ENST00000469223 WNT10BO00744 389 aa16.68■□□□□ 0.26
HDAC6-217ENST00000469223 PDIA6Q15084 440 aa16.68■□□□□ 0.26
HDAC6-217ENST00000469223 SH3TC2Q8TF17 1288 aa16.68■□□□□ 0.26
HDAC6-217ENST00000469223 SLC10A4Q96EP9 437 aa16.68■□□□□ 0.26
HDAC6-217ENST00000469223 GGA1Q9UJY5 639 aa16.68■□□□□ 0.26
HDAC6-217ENST00000469223 ALPK3Q96L96 1907 aa16.68■□□□□ 0.26
HDAC6-217ENST00000469223 COL1A1P02452 1464 aaPredicted RBP16.67■□□□□ 0.26
HDAC6-217ENST00000469223 U2AF1L5P0DN76 240 aaPredicted RBP16.67■□□□□ 0.26
HDAC6-217ENST00000469223 U2AF1Q01081 240 aaKnown RBP eCLIP16.67■□□□□ 0.26
HDAC6-217ENST00000469223 COL25A1Q9BXS0 654 aaPredicted RBP16.67■□□□□ 0.26
HDAC6-217ENST00000469223 PODXL2Q9NZ53 605 aa16.67■□□□□ 0.26
HDAC6-217ENST00000469223 ANKIB1Q9P2G1 1089 aa16.67■□□□□ 0.26
HDAC6-217ENST00000469223 USP17L3A6NCW0 530 aa16.66■□□□□ 0.26
HDAC6-217ENST00000469223 USP17L4A6NCW7 530 aa16.66■□□□□ 0.26
HDAC6-217ENST00000469223 AIMP1Q12904 312 aaKnown RBP16.66■□□□□ 0.26
HDAC6-217ENST00000469223 SF3B3Q15393 1217 aaKnown RBP16.66■□□□□ 0.26
HDAC6-217ENST00000469223 OTUD7BQ6GQQ9 843 aa16.66■□□□□ 0.26
HDAC6-217ENST00000469223 USP17L1Q7RTZ2 530 aa16.66■□□□□ 0.26
HDAC6-217ENST00000469223 APOBEC3FQ8IUX4 373 aaKnown RBP16.66■□□□□ 0.26
HDAC6-217ENST00000469223 MXD3Q9BW11 206 aa16.66■□□□□ 0.26
HDAC6-217ENST00000469223 PER1O15534 1290 aaPredicted RBP16.65■□□□□ 0.26
HDAC6-217ENST00000469223 EIF2S2P20042 333 aaKnown RBP16.65■□□□□ 0.26
HDAC6-217ENST00000469223 XAGE3Q8WTP9 111 aa16.65■□□□□ 0.26
HDAC6-217ENST00000469223 CFAP53Q96M91 514 aa16.65■□□□□ 0.26
HDAC6-217ENST00000469223 EYSQ5T1H1 3165 aa16.64■□□□□ 0.25
HDAC6-217ENST00000469223 GJA5P36382 358 aa16.64■□□□□ 0.25
HDAC6-217ENST00000469223 RPS8P62241 208 aaKnown RBP16.64■□□□□ 0.25
HDAC6-217ENST00000469223 COPS6Q7L5N1 327 aa16.64■□□□□ 0.25
HDAC6-217ENST00000469223 FBXW7Q969H0 707 aa16.64■□□□□ 0.25
HDAC6-217ENST00000469223 FAM89AQ96GI7 184 aa16.64■□□□□ 0.25
HDAC6-217ENST00000469223 PTPN18Q99952 460 aa16.64■□□□□ 0.25
HDAC6-217ENST00000469223 LAMA2P24043 3122 aaKnown RBP16.63■□□□□ 0.25
HDAC6-217ENST00000469223 A0A1W2PPC1 479 aa16.63■□□□□ 0.25
HDAC6-217ENST00000469223 RTL5Q5HYW3 569 aaPredicted RBP16.63■□□□□ 0.25
HDAC6-217ENST00000469223 OGFOD1Q8N543 542 aa16.63■□□□□ 0.25
HDAC6-217ENST00000469223 NUDCQ9Y266 331 aa16.63■□□□□ 0.25
HDAC6-217ENST00000469223 ZBTB7BO15156 539 aaPredicted RBP16.62■□□□□ 0.25
HDAC6-217ENST00000469223 DACT2Q5SW24 774 aa16.62■□□□□ 0.25
HDAC6-217ENST00000469223 HTATIP2Q9BUP3 242 aa16.62■□□□□ 0.25
HDAC6-217ENST00000469223 ARHGEF6Q15052 776 aa16.61■□□□□ 0.25
HDAC6-217ENST00000469223 MAP3K11Q16584 847 aa16.61■□□□□ 0.25
HDAC6-217ENST00000469223 SEC31BQ9NQW1 1179 aa16.61■□□□□ 0.25
HDAC6-217ENST00000469223 MTFR1Q15390 333 aa16.6■□□□□ 0.25
HDAC6-217ENST00000469223 Q7L0L9 218 aa16.6■□□□□ 0.25
HDAC6-217ENST00000469223 PODNQ7Z5L7 613 aa16.6■□□□□ 0.25
HDAC6-217ENST00000469223 ARHGAP39Q9C0H5 1083 aa16.6■□□□□ 0.25
HDAC6-217ENST00000469223 NR2E3Q9Y5X4 410 aa16.6■□□□□ 0.25
HDAC6-217ENST00000469223 MYH3P11055 1940 aa16.6■□□□□ 0.25
HDAC6-217ENST00000469223 PRUNE2Q8WUY3 3088 aa16.59■□□□□ 0.25
HDAC6-217ENST00000469223 TAF1CQ15572 869 aaPredicted RBP16.59■□□□□ 0.25
HDAC6-217ENST00000469223 UBE2Q1Q7Z7E8 422 aa16.59■□□□□ 0.25
HDAC6-217ENST00000469223 DEFB123Q8N688 67 aa16.59■□□□□ 0.25
HDAC6-217ENST00000469223 DEFB129Q9H1M3 183 aa16.59■□□□□ 0.25
HDAC6-217ENST00000469223 XDHP47989 1333 aa16.59■□□□□ 0.25
HDAC6-217ENST00000469223 MYO3BQ8WXR4 1341 aa16.59■□□□□ 0.25
HDAC6-217ENST00000469223 TESPA1A2RU30 521 aaPredicted RBP16.58■□□□□ 0.24
HDAC6-217ENST00000469223 ATP5J2-PTCD1G3V325 749 aa16.58■□□□□ 0.24
HDAC6-217ENST00000469223 IRS4O14654 1257 aaPredicted RBP16.58■□□□□ 0.24
HDAC6-217ENST00000469223 PPP1R12BO60237 982 aaPredicted RBP16.58■□□□□ 0.24
HDAC6-217ENST00000469223 TSPYL4Q9UJ04 414 aa16.58■□□□□ 0.24
HDAC6-217ENST00000469223 STXBP5LQ9Y2K9 1186 aa16.58■□□□□ 0.24
HDAC6-217ENST00000469223 MED23Q9ULK4 1368 aa16.58■□□□□ 0.24
HDAC6-217ENST00000469223 KIAA0825Q8IV33 1275 aa16.56■□□□□ 0.24
HDAC6-217ENST00000469223 ZBED3Q96IU2 234 aaPredicted RBP16.56■□□□□ 0.24
HDAC6-217ENST00000469223 ISCA1Q9BUE6 129 aa16.56■□□□□ 0.24
HDAC6-217ENST00000469223 ELP3Q9H9T3 547 aa16.56■□□□□ 0.24
HDAC6-217ENST00000469223 ZFYVE28Q9HCC9 887 aa16.56■□□□□ 0.24
HDAC6-217ENST00000469223 ARAP2Q8WZ64 1704 aa16.56■□□□□ 0.24
HDAC6-217ENST00000469223 MGAMO43451 1857 aa16.55■□□□□ 0.24
HDAC6-217ENST00000469223 IREB2P48200 963 aaKnown RBP16.55■□□□□ 0.24
HDAC6-217ENST00000469223 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.55■□□□□ 0.24
HDAC6-217ENST00000469223 BRI3BPQ8WY22 251 aa16.55■□□□□ 0.24
HDAC6-217ENST00000469223 OPTNQ96CV9 577 aa16.55■□□□□ 0.24
HDAC6-217ENST00000469223 STAP2Q9UGK3 403 aa16.55■□□□□ 0.24
HDAC6-217ENST00000469223 UNCXA6NJT0 531 aa16.54■□□□□ 0.24
HDAC6-217ENST00000469223 ECM2O94769 699 aaPredicted RBP16.54■□□□□ 0.24
HDAC6-217ENST00000469223 FARP2O94887 1054 aaPredicted RBP16.54■□□□□ 0.24
HDAC6-217ENST00000469223 ATP2B4P23634 1241 aa16.54■□□□□ 0.24
HDAC6-217ENST00000469223 STRIP1Q5VSL9 837 aa16.54■□□□□ 0.24
HDAC6-217ENST00000469223 NKX2-3Q8TAU0 364 aa16.54■□□□□ 0.24
HDAC6-217ENST00000469223 MS4A4AQ96JQ5 239 aa16.54■□□□□ 0.24
HDAC6-217ENST00000469223 CCDC85AQ96PX6 553 aaPredicted RBP16.54■□□□□ 0.24
HDAC6-217ENST00000469223 CCL15-CCL14A0A0B4J2E2 113 aa16.53■□□□□ 0.24
HDAC6-217ENST00000469223 GJA8P48165 433 aa16.53■□□□□ 0.24
HDAC6-217ENST00000469223 LACTBP83111 547 aaPredicted RBP16.53■□□□□ 0.24
HDAC6-217ENST00000469223 KIF22Q14807 665 aa16.53■□□□□ 0.24
HDAC6-217ENST00000469223 CCL15Q16663 113 aa16.53■□□□□ 0.24
HDAC6-217ENST00000469223 ANKRD13DQ6ZTN6 518 aa16.53■□□□□ 0.24
HDAC6-217ENST00000469223 ANKRD13AQ8IZ07 590 aa16.53■□□□□ 0.24
HDAC6-217ENST00000469223 FAM43AQ8N2R8 423 aa16.53■□□□□ 0.24
HDAC6-217ENST00000469223 CNKSR2Q8WXI2 1034 aa16.53■□□□□ 0.24
HDAC6-217ENST00000469223 PPP2R3BQ9Y5P8 575 aa16.53■□□□□ 0.24
HDAC6-217ENST00000469223 MUC3AQ02505 3323 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms