RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 TSPYL4Q9UJ04 414 aa12.75□□□□□ -0.37
USP39-212ENST00000465514 MANSC4A6NHS7 340 aaPredicted RBP12.74□□□□□ -0.37
USP39-212ENST00000465514 MYCP01106 439 aaPredicted RBP12.74□□□□□ -0.37
USP39-212ENST00000465514 RIPK4P57078 832 aa12.74□□□□□ -0.37
USP39-212ENST00000465514 CRHR2Q13324 411 aa12.74□□□□□ -0.37
USP39-212ENST00000465514 SLC9C1Q4G0N8 1177 aa12.74□□□□□ -0.37
USP39-212ENST00000465514 ARMC9Q7Z3E5 817 aa12.74□□□□□ -0.37
USP39-212ENST00000465514 NECTIN2Q92692 538 aa12.74□□□□□ -0.37
USP39-212ENST00000465514 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.74□□□□□ -0.37
USP39-212ENST00000465514 OTOFQ9HC10 1997 aa12.74□□□□□ -0.37
USP39-212ENST00000465514 VCANP13611 3396 aa12.73□□□□□ -0.37
USP39-212ENST00000465514 UFL1O94874 794 aa12.73□□□□□ -0.37
USP39-212ENST00000465514 EIF2S2P20042 333 aaKnown RBP12.73□□□□□ -0.37
USP39-212ENST00000465514 PROSER3Q2NL68 480 aa12.73□□□□□ -0.37
USP39-212ENST00000465514 LDLRAD1Q5T700 205 aa12.73□□□□□ -0.37
USP39-212ENST00000465514 FZD1Q9UP38 647 aa12.73□□□□□ -0.37
USP39-212ENST00000465514 ECM29Q5VYK3 1845 aa12.73□□□□□ -0.37
USP39-212ENST00000465514 ANXA1P04083 346 aa12.72□□□□□ -0.37
USP39-212ENST00000465514 INHBEP58166 350 aa12.72□□□□□ -0.37
USP39-212ENST00000465514 PDIA6Q15084 440 aa12.72□□□□□ -0.37
USP39-212ENST00000465514 RALBP1Q15311 655 aa12.72□□□□□ -0.37
USP39-212ENST00000465514 HSP90AB3PQ58FF7 597 aa12.72□□□□□ -0.37
USP39-212ENST00000465514 NBPF11Q86T75 865 aa12.72□□□□□ -0.37
USP39-212ENST00000465514 PRO3102Q9H379 93 aa12.72□□□□□ -0.37
USP39-212ENST00000465514 ANGEL1Q9UNK9 670 aaKnown RBP12.72□□□□□ -0.37
USP39-212ENST00000465514 PTCH2Q9Y6C5 1203 aa12.72□□□□□ -0.37
USP39-212ENST00000465514 SPEF2Q9C093 1822 aa12.72□□□□□ -0.37
USP39-212ENST00000465514 SOX1O00570 391 aaPredicted RBP12.71□□□□□ -0.37
USP39-212ENST00000465514 ZBTB48P10074 688 aaPredicted RBP12.71□□□□□ -0.37
USP39-212ENST00000465514 TMPOP42166 694 aaKnown RBP12.71□□□□□ -0.37
USP39-212ENST00000465514 SP3Q02447 781 aa12.71□□□□□ -0.37
USP39-212ENST00000465514 DPF3Q92784 378 aa12.71□□□□□ -0.37
USP39-212ENST00000465514 WNK4Q96J92 1243 aa12.71□□□□□ -0.37
USP39-212ENST00000465514 BABAM1Q9NWV8 329 aa12.71□□□□□ -0.37
USP39-212ENST00000465514 SSC5DA1L4H1 1573 aa12.7□□□□□ -0.38
USP39-212ENST00000465514 WNT10BO00744 389 aa12.7□□□□□ -0.38
USP39-212ENST00000465514 SASH1O94885 1247 aa12.7□□□□□ -0.38
USP39-212ENST00000465514 SF3B3Q15393 1217 aaKnown RBP12.7□□□□□ -0.38
USP39-212ENST00000465514 SLC10A4Q96EP9 437 aa12.7□□□□□ -0.38
USP39-212ENST00000465514 CLMNQ96JQ2 1002 aa12.7□□□□□ -0.38
USP39-212ENST00000465514 PODXL2Q9NZ53 605 aa12.7□□□□□ -0.38
USP39-212ENST00000465514 ANKIB1Q9P2G1 1089 aa12.7□□□□□ -0.38
USP39-212ENST00000465514 USP17L3A6NCW0 530 aa12.69□□□□□ -0.38
USP39-212ENST00000465514 USP17L4A6NCW7 530 aa12.69□□□□□ -0.38
USP39-212ENST00000465514 WTIPA6NIX2 430 aaPredicted RBP12.69□□□□□ -0.38
USP39-212ENST00000465514 LMOD3Q0VAK6 560 aa12.69□□□□□ -0.38
USP39-212ENST00000465514 AIMP1Q12904 312 aaKnown RBP12.69□□□□□ -0.38
USP39-212ENST00000465514 USP17L1Q7RTZ2 530 aa12.69□□□□□ -0.38
USP39-212ENST00000465514 LRCH3Q96II8 777 aa12.69□□□□□ -0.38
USP39-212ENST00000465514 GGA1Q9UJY5 639 aa12.69□□□□□ -0.38
USP39-212ENST00000465514 RPS8P62241 208 aaKnown RBP12.68□□□□□ -0.38
USP39-212ENST00000465514 NEUROD2Q15784 382 aa12.68□□□□□ -0.38
USP39-212ENST00000465514 OTUD7BQ6GQQ9 843 aa12.68□□□□□ -0.38
USP39-212ENST00000465514 COPS6Q7L5N1 327 aa12.68□□□□□ -0.38
USP39-212ENST00000465514 APOBEC3FQ8IUX4 373 aaKnown RBP12.68□□□□□ -0.38
USP39-212ENST00000465514 CCDC146Q8IYE0 955 aa12.68□□□□□ -0.38
USP39-212ENST00000465514 SH3TC2Q8TF17 1288 aa12.68□□□□□ -0.38
USP39-212ENST00000465514 XAGE3Q8WTP9 111 aa12.68□□□□□ -0.38
USP39-212ENST00000465514 SHISA4Q96DD7 197 aa12.68□□□□□ -0.38
USP39-212ENST00000465514 FAM89AQ96GI7 184 aa12.68□□□□□ -0.38
USP39-212ENST00000465514 MXD3Q9BW11 206 aa12.68□□□□□ -0.38
USP39-212ENST00000465514 COL1A1P02452 1464 aaPredicted RBP12.67□□□□□ -0.38
USP39-212ENST00000465514 DDX10Q13206 875 aaKnown RBP12.67□□□□□ -0.38
USP39-212ENST00000465514 OGFOD1Q8N543 542 aa12.67□□□□□ -0.38
USP39-212ENST00000465514 MYBBP1AQ9BQG0 1328 aaKnown RBP12.66□□□□□ -0.38
USP39-212ENST00000465514 CHL1O00533 1208 aa12.66□□□□□ -0.38
USP39-212ENST00000465514 GJA5P36382 358 aa12.66□□□□□ -0.38
USP39-212ENST00000465514 KRT24Q2M2I5 525 aa12.66□□□□□ -0.38
USP39-212ENST00000465514 RTL5Q5HYW3 569 aaPredicted RBP12.66□□□□□ -0.38
USP39-212ENST00000465514 PTPN18Q99952 460 aa12.66□□□□□ -0.38
USP39-212ENST00000465514 COL25A1Q9BXS0 654 aaPredicted RBP12.66□□□□□ -0.38
USP39-212ENST00000465514 LAS1LQ9Y4W2 734 aaKnown RBP12.66□□□□□ -0.38
USP39-212ENST00000465514 ALPK3Q96L96 1907 aa12.66□□□□□ -0.38
USP39-212ENST00000465514 SPTBN5Q9NRC6 3674 aaKnown RBP12.66□□□□□ -0.38
USP39-212ENST00000465514 MAP3K11Q16584 847 aa12.65□□□□□ -0.38
USP39-212ENST00000465514 DACT2Q5SW24 774 aa12.65□□□□□ -0.38
USP39-212ENST00000465514 PODNQ7Z5L7 613 aa12.65□□□□□ -0.38
USP39-212ENST00000465514 FBXW7Q969H0 707 aa12.65□□□□□ -0.38
USP39-212ENST00000465514 RUNDC1Q96C34 613 aa12.65□□□□□ -0.38
USP39-212ENST00000465514 SEC31BQ9NQW1 1179 aa12.65□□□□□ -0.38
USP39-212ENST00000465514 TRIM35Q9UPQ4 493 aa12.65□□□□□ -0.38
USP39-212ENST00000465514 EYSQ5T1H1 3165 aa12.65□□□□□ -0.39
USP39-212ENST00000465514 A0A1W2PPC1 479 aa12.64□□□□□ -0.39
USP39-212ENST00000465514 MYCNP04198 464 aaPredicted RBP12.64□□□□□ -0.39
USP39-212ENST00000465514 ARHGEF6Q15052 776 aa12.64□□□□□ -0.39
USP39-212ENST00000465514 WDR43Q15061 677 aaKnown RBP eCLIP12.64□□□□□ -0.39
USP39-212ENST00000465514 XDHP47989 1333 aa12.63□□□□□ -0.39
USP39-212ENST00000465514 IRS4O14654 1257 aaPredicted RBP12.63□□□□□ -0.39
USP39-212ENST00000465514 ZBTB7BO15156 539 aaPredicted RBP12.63□□□□□ -0.39
USP39-212ENST00000465514 PPP1R12BO60237 982 aaPredicted RBP12.63□□□□□ -0.39
USP39-212ENST00000465514 HTATIP2Q9BUP3 242 aa12.63□□□□□ -0.39
USP39-212ENST00000465514 DEFB129Q9H1M3 183 aa12.63□□□□□ -0.39
USP39-212ENST00000465514 CHPF2Q9P2E5 772 aa12.63□□□□□ -0.39
USP39-212ENST00000465514 ADAMTS8Q9UP79 889 aa12.63□□□□□ -0.39
USP39-212ENST00000465514 NR2E3Q9Y5X4 410 aa12.63□□□□□ -0.39
USP39-212ENST00000465514 MYO3BQ8WXR4 1341 aa12.62□□□□□ -0.39
USP39-212ENST00000465514 TESPA1A2RU30 521 aaPredicted RBP12.62□□□□□ -0.39
USP39-212ENST00000465514 ATP5J2-PTCD1G3V325 749 aa12.62□□□□□ -0.39
USP39-212ENST00000465514 MTFR1Q15390 333 aa12.62□□□□□ -0.39
USP39-212ENST00000465514 TAF1CQ15572 869 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms