RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 POLR1AO95602 1720 aaPredicted RBP6.5□□□□□ -1.37
CSMD3-205ENST00000462254 IQGAP1P46940 1657 aa6.5□□□□□ -1.37
CSMD3-205ENST00000462254 NLRP8Q86W28 1048 aa6.5□□□□□ -1.37
CSMD3-205ENST00000462254 RHPN1Q8TCX5 695 aa6.5□□□□□ -1.37
CSMD3-205ENST00000462254 HSH2DQ96JZ2 352 aa6.5□□□□□ -1.37
CSMD3-205ENST00000462254 CEP170BQ9Y4F5 1589 aaPredicted RBP6.49□□□□□ -1.37
CSMD3-205ENST00000462254 SOWAHDA6NJG2 315 aa6.49□□□□□ -1.37
CSMD3-205ENST00000462254 BNIP3LO60238 219 aa6.49□□□□□ -1.37
CSMD3-205ENST00000462254 SSFA2P28290 1259 aa6.49□□□□□ -1.37
CSMD3-205ENST00000462254 CEBPAP49715 358 aaPredicted RBP6.49□□□□□ -1.37
CSMD3-205ENST00000462254 ZC3H6P61129 1189 aaKnown RBP6.49□□□□□ -1.37
CSMD3-205ENST00000462254 LBRQ14739 615 aaKnown RBP6.49□□□□□ -1.37
CSMD3-205ENST00000462254 NAA30Q147X3 362 aaPredicted RBP6.49□□□□□ -1.37
CSMD3-205ENST00000462254 GIPC2Q8TF65 315 aa6.49□□□□□ -1.37
CSMD3-205ENST00000462254 ABHD17AQ96GS6 310 aa6.49□□□□□ -1.37
CSMD3-205ENST00000462254 SUSD3Q96L08 255 aa6.49□□□□□ -1.37
CSMD3-205ENST00000462254 SAP130Q9H0E3 1048 aa6.49□□□□□ -1.37
CSMD3-205ENST00000462254 NDFIP2Q9NV92 336 aa6.49□□□□□ -1.37
CSMD3-205ENST00000462254 KLK14Q9P0G3 267 aa6.49□□□□□ -1.37
CSMD3-205ENST00000462254 LRFN2Q9ULH4 789 aa6.49□□□□□ -1.37
CSMD3-205ENST00000462254 BCS1LQ9Y276 419 aa6.49□□□□□ -1.37
CSMD3-205ENST00000462254 LAMC1P11047 1609 aa6.49□□□□□ -1.37
CSMD3-205ENST00000462254 A2ML1A8K2U0 1454 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 PTPRMP28827 1452 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 MYOM2P54296 1465 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 TNRQ92752 1358 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 NRXN3Q9Y4C0 1643 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 SMARCA5O60264 1052 aaPredicted RBP6.48□□□□□ -1.37
CSMD3-205ENST00000462254 RTN1Q16799 776 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 COX20Q5RI15 118 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 FOXR1Q6PIV2 292 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 UBXN4Q92575 508 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 VTI1AQ96AJ9 217 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 CNTNAP3BQ96NU0 1288 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 CNTNAP3Q9BZ76 1288 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 SEPT3Q9UH03 358 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 PCDHGC4Q9Y5F7 938 aa6.48□□□□□ -1.37
CSMD3-205ENST00000462254 NLRP1Q9C000 1473 aa6.47□□□□□ -1.37
CSMD3-205ENST00000462254 DCDC2BA2VCK2 349 aa6.47□□□□□ -1.37
CSMD3-205ENST00000462254 ATXN7O15265 892 aaPredicted RBP6.47□□□□□ -1.37
CSMD3-205ENST00000462254 MARSP56192 900 aaKnown RBP6.47□□□□□ -1.37
CSMD3-205ENST00000462254 TNP2Q05952 138 aa6.47□□□□□ -1.37
CSMD3-205ENST00000462254 IDI1Q13907 227 aa6.47□□□□□ -1.37
CSMD3-205ENST00000462254 RGL3Q3MIN7 710 aa6.47□□□□□ -1.37
CSMD3-205ENST00000462254 ZNF326Q5BKZ1 582 aaKnown RBP6.47□□□□□ -1.37
CSMD3-205ENST00000462254 TRERF1Q96PN7 1200 aa6.47□□□□□ -1.37
CSMD3-205ENST00000462254 STRN4Q9NRL3 753 aa6.47□□□□□ -1.37
CSMD3-205ENST00000462254 GJA3Q9Y6H8 435 aa6.47□□□□□ -1.37
CSMD3-205ENST00000462254 UHRF1BP1Q6BDS2 1440 aa6.47□□□□□ -1.37
CSMD3-205ENST00000462254 RALGAPBQ86X10 1494 aa6.47□□□□□ -1.37
CSMD3-205ENST00000462254 NRXN1Q9ULB1 1477 aa6.47□□□□□ -1.37
CSMD3-205ENST00000462254 MAPTP10636 758 aaKnown RBP6.46□□□□□ -1.38
CSMD3-205ENST00000462254 NCLP19338 710 aaKnown RBP6.46□□□□□ -1.38
CSMD3-205ENST00000462254 DGKZQ13574 1117 aa6.46□□□□□ -1.38
CSMD3-205ENST00000462254 GRIN2CQ14957 1233 aa6.46□□□□□ -1.38
CSMD3-205ENST00000462254 SF3A1Q15459 793 aaKnown RBP6.46□□□□□ -1.38
CSMD3-205ENST00000462254 NBPF8Q3BBV2 869 aa6.46□□□□□ -1.38
CSMD3-205ENST00000462254 FAM26DQ5JW98 314 aa6.46□□□□□ -1.38
CSMD3-205ENST00000462254 PRAG1Q86YV5 1406 aa6.46□□□□□ -1.38
CSMD3-205ENST00000462254 NPAS4Q8IUM7 802 aa6.46□□□□□ -1.38
CSMD3-205ENST00000462254 ARHGEF28Q8N1W1 1705 aaKnown RBP6.46□□□□□ -1.38
CSMD3-205ENST00000462254 COL26A1Q96A83 441 aa6.46□□□□□ -1.38
CSMD3-205ENST00000462254 CFHR5Q9BXR6 569 aa6.46□□□□□ -1.38
CSMD3-205ENST00000462254 NEUROD4Q9HD90 331 aa6.46□□□□□ -1.38
CSMD3-205ENST00000462254 SLC52A1Q9NWF4 448 aa6.46□□□□□ -1.38
CSMD3-205ENST00000462254 GPC6Q9Y625 555 aaPredicted RBP6.46□□□□□ -1.38
CSMD3-205ENST00000462254 ZFYVE9O95405 1425 aa6.45□□□□□ -1.38
CSMD3-205ENST00000462254 KHNYNO15037 678 aaKnown RBP6.45□□□□□ -1.38
CSMD3-205ENST00000462254 CTBSQ01459 385 aa6.45□□□□□ -1.38
CSMD3-205ENST00000462254 SAMD5Q5TGI4 173 aa6.45□□□□□ -1.38
CSMD3-205ENST00000462254 FIGNL1Q6PIW4 674 aa6.45□□□□□ -1.38
CSMD3-205ENST00000462254 DCAF11Q8TEB1 546 aa6.45□□□□□ -1.38
CSMD3-205ENST00000462254 MYO19Q96H55 970 aa6.45□□□□□ -1.38
CSMD3-205ENST00000462254 DMGDHQ9UI17 866 aaKnown RBP6.45□□□□□ -1.38
CSMD3-205ENST00000462254 ATXN7L1Q9ULK2 861 aaPredicted RBP6.45□□□□□ -1.38
CSMD3-205ENST00000462254 SLIT1O75093 1534 aa6.45□□□□□ -1.38
CSMD3-205ENST00000462254 ASXL1Q8IXJ9 1541 aa6.45□□□□□ -1.38
CSMD3-205ENST00000462254 SETBP1Q9Y6X0 1596 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 C2CD2LO14523 706 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 TNFRSF10BO14763 440 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 EFSO43281 561 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 WIPF1O43516 503 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 PTCD1O75127 700 aaKnown RBP6.44□□□□□ -1.38
CSMD3-205ENST00000462254 FAM157BP0CG42 384 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 CD33P20138 364 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 FGFR3P22607 806 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 C11orf91Q3C1V1 193 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 C16orf46Q6P387 395 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 BTLAQ7Z6A9 289 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 CEP63Q96MT8 703 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.44□□□□□ -1.38
CSMD3-205ENST00000462254 ANKIB1Q9P2G1 1089 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 ARHGAP23Q9P227 1491 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 KNDC1Q76NI1 1749 aa6.44□□□□□ -1.38
CSMD3-205ENST00000462254 PIK3C2GO75747 1445 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 RIMS2Q9UQ26 1411 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 QRICH2Q9H0J4 1663 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 ANKRD33BA6NCL7 494 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 MX2P20592 715 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 LORP23490 312 aaPredicted RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms