RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 KIF20AO95235 890 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 NAA16Q6N069 864 aaPredicted RBP16.94■□□□□ 0.3
PTPRU-205ENST00000460170 UTP14AQ9BVJ6 771 aaKnown RBP16.94■□□□□ 0.3
PTPRU-205ENST00000460170 STX8Q9UNK0 236 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 NIP7Q9Y221 180 aaKnown RBP eCLIP16.94■□□□□ 0.3
PTPRU-205ENST00000460170 USO1O60763 962 aaKnown RBP16.94■□□□□ 0.3
PTPRU-205ENST00000460170 GNAT2P19087 354 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 GNG11P61952 73 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 PPP4R3BQ5MIZ7 849 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 SSH3Q8TE77 659 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 A0A1B0GUL7 405 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 HELBQ8NG08 1087 aaPredicted RBP16.94■□□□□ 0.3
PTPRU-205ENST00000460170 TMX1Q9H3N1 280 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 LMBRD1Q9NUN5 540 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 PREX2Q70Z35 1606 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 IDEP14735 1019 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 CCDC129Q6ZRS4 1044 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 IL17REQ8NFR9 667 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 VAT1LQ9HCJ6 419 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 AATKQ6ZMQ8 1374 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 CENPHQ9H3R5 247 aa16.94■□□□□ 0.3
PTPRU-205ENST00000460170 FAM135BQ49AJ0 1406 aa16.93■□□□□ 0.3
PTPRU-205ENST00000460170 MAP9Q49MG5 647 aa16.93■□□□□ 0.3
PTPRU-205ENST00000460170 SLC52A2Q9HAB3 445 aa16.93■□□□□ 0.3
PTPRU-205ENST00000460170 AFMP43652 599 aa16.93■□□□□ 0.3
PTPRU-205ENST00000460170 GCKRQ14397 625 aa16.93■□□□□ 0.3
PTPRU-205ENST00000460170 ERICH4A6NGS2 130 aa16.93■□□□□ 0.3
PTPRU-205ENST00000460170 LMOD1P29536 600 aaPredicted RBP16.93■□□□□ 0.3
PTPRU-205ENST00000460170 SLC4A8Q2Y0W8 1093 aa16.93■□□□□ 0.3
PTPRU-205ENST00000460170 PRDM10Q9NQV6 1147 aa16.93■□□□□ 0.3
PTPRU-205ENST00000460170 RMND1Q9NWS8 449 aa16.93■□□□□ 0.3
PTPRU-205ENST00000460170 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.93■□□□□ 0.3
PTPRU-205ENST00000460170 YEATS2Q9ULM3 1422 aa16.92■□□□□ 0.3
PTPRU-205ENST00000460170 TRIM75PA6NK02 468 aa16.92■□□□□ 0.3
PTPRU-205ENST00000460170 LUZP1Q86V48 1076 aa16.92■□□□□ 0.3
PTPRU-205ENST00000460170 CCDC191Q8NCU4 936 aa16.92■□□□□ 0.3
PTPRU-205ENST00000460170 NLRP3Q96P20 1036 aa16.92■□□□□ 0.3
PTPRU-205ENST00000460170 PTGS1P23219 599 aa16.92■□□□□ 0.3
PTPRU-205ENST00000460170 MCM3P25205 808 aa16.92■□□□□ 0.3
PTPRU-205ENST00000460170 LTKP29376 864 aa16.92■□□□□ 0.3
PTPRU-205ENST00000460170 HSP90AA4PQ58FG1 418 aa16.92■□□□□ 0.3
PTPRU-205ENST00000460170 ACSBG1Q96GR2 724 aa16.92■□□□□ 0.3
PTPRU-205ENST00000460170 GSTO1P78417 241 aa16.91■□□□□ 0.3
PTPRU-205ENST00000460170 FAM89AQ96GI7 184 aa16.91■□□□□ 0.3
PTPRU-205ENST00000460170 TDRD12Q587J7 1177 aaKnown RBP16.91■□□□□ 0.3
PTPRU-205ENST00000460170 FAM114A1Q8IWE2 563 aa16.91■□□□□ 0.3
PTPRU-205ENST00000460170 MAGEB6Q8N7X4 407 aa16.91■□□□□ 0.3
PTPRU-205ENST00000460170 BRD1O95696 1058 aa16.91■□□□□ 0.3
PTPRU-205ENST00000460170 KBTBD3Q8NAB2 608 aa16.91■□□□□ 0.3
PTPRU-205ENST00000460170 SMARCC1Q92922 1105 aaPredicted RBP16.91■□□□□ 0.3
PTPRU-205ENST00000460170 LLPHQ9BRT6 129 aaKnown RBP16.91■□□□□ 0.3
PTPRU-205ENST00000460170 GNAQP50148 359 aa16.91■□□□□ 0.3
PTPRU-205ENST00000460170 CCDC178Q5BJE1 867 aa16.91■□□□□ 0.3
PTPRU-205ENST00000460170 RRAGBQ5VZM2 374 aa16.91■□□□□ 0.3
PTPRU-205ENST00000460170 VPS36Q86VN1 386 aa16.91■□□□□ 0.3
PTPRU-205ENST00000460170 CTAGE1Q96RT6 745 aa16.91■□□□□ 0.3
PTPRU-205ENST00000460170 UBA5Q9GZZ9 404 aa16.91■□□□□ 0.3
PTPRU-205ENST00000460170 MAGEB6P1A0A0J9YX57 407 aa16.9■□□□□ 0.3
PTPRU-205ENST00000460170 KIAA0754O94854 1291 aa16.9■□□□□ 0.3
PTPRU-205ENST00000460170 PAFAH1B1P43034 410 aa16.9■□□□□ 0.3
PTPRU-205ENST00000460170 FAM173BQ6P4H8 233 aa16.9■□□□□ 0.3
PTPRU-205ENST00000460170 TM6SF1Q9BZW5 370 aa16.9■□□□□ 0.3
PTPRU-205ENST00000460170 SPAG1Q07617 926 aa16.9■□□□□ 0.3
PTPRU-205ENST00000460170 DDB1Q16531 1140 aa16.9■□□□□ 0.3
PTPRU-205ENST00000460170 RFC4P35249 363 aa16.9■□□□□ 0.3
PTPRU-205ENST00000460170 AEBP2Q6ZN18 517 aaPredicted RBP16.9■□□□□ 0.3
PTPRU-205ENST00000460170 TRIM47Q96LD4 638 aa16.9■□□□□ 0.3
PTPRU-205ENST00000460170 SETDB2Q96T68 719 aa16.9■□□□□ 0.3
PTPRU-205ENST00000460170 RRAGDQ9NQL2 400 aaPredicted RBP16.9■□□□□ 0.3
PTPRU-205ENST00000460170 FAM160A1Q05DH4 1040 aa16.9■□□□□ 0.3
PTPRU-205ENST00000460170 ZNF496Q96IT1 587 aaPredicted RBP16.9■□□□□ 0.3
PTPRU-205ENST00000460170 POTEB2H3BUK9 544 aa16.89■□□□□ 0.3
PTPRU-205ENST00000460170 TSPY3P0CV98 308 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 TSPY8P0CW00 308 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 PPP1R1BQ9UD71 204 aaPredicted RBP16.89■□□□□ 0.29
PTPRU-205ENST00000460170 DNAI1Q9UI46 699 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 CALM1P0DP23 149 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 CALM2P0DP24 149 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 CALM3P0DP25 149 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 MIGA1Q8NAN2 632 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 CLASP1Q7Z460 1538 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 CUL5Q93034 780 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 SSH2Q76I76 1423 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 KAT6BQ8WYB5 2073 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 RXRAP19793 462 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 TNIP1Q15025 636 aa16.89■□□□□ 0.29
PTPRU-205ENST00000460170 BMS1Q14692 1282 aaKnown RBP16.88■□□□□ 0.29
PTPRU-205ENST00000460170 ENOX2Q16206 610 aaKnown RBP16.88■□□□□ 0.29
PTPRU-205ENST00000460170 ZFYVE16Q7Z3T8 1539 aa16.88■□□□□ 0.29
PTPRU-205ENST00000460170 RTL9Q8NET4 1388 aa16.88■□□□□ 0.29
PTPRU-205ENST00000460170 GIGYF1O75420 1035 aaPredicted RBP16.88■□□□□ 0.29
PTPRU-205ENST00000460170 STAT6P42226 847 aa16.88■□□□□ 0.29
PTPRU-205ENST00000460170 CCDC40Q4G0X9 1142 aa16.88■□□□□ 0.29
PTPRU-205ENST00000460170 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.88■□□□□ 0.29
PTPRU-205ENST00000460170 A0A1B0GVL5 298 aa16.88■□□□□ 0.29
PTPRU-205ENST00000460170 DHX58Q96C10 678 aa16.88■□□□□ 0.29
PTPRU-205ENST00000460170 MLH3Q9UHC1 1453 aa16.88■□□□□ 0.29
PTPRU-205ENST00000460170 APPBP2Q92624 585 aa16.88■□□□□ 0.29
PTPRU-205ENST00000460170 METP08581 1390 aa16.87■□□□□ 0.29
PTPRU-205ENST00000460170 GADD45BO75293 160 aaPredicted RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms