RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	ATP2B3	Q16720	1220 aa		13.8	□□□□□ -0.2
MSH6-204	ENST00000445503	DLG5	Q8TDM6	1919 aa		13.8	□□□□□ -0.2
MSH6-204	ENST00000445503		A0A1B0GUL7	405 aa		13.8	□□□□□ -0.2
MSH6-204	ENST00000445503	PES1	O00541	588 aa	Known RBP	13.8	□□□□□ -0.2
MSH6-204	ENST00000445503	ELP1	O95163	1332 aa		13.8	□□□□□ -0.2
MSH6-204	ENST00000445503	PTPRU	Q92729	1446 aa		13.8	□□□□□ -0.2
MSH6-204	ENST00000445503		E7EWF7	191 aa		13.8	□□□□□ -0.2
MSH6-204	ENST00000445503	SAFB	Q15424	915 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
MSH6-204	ENST00000445503	SPTLC2	O15270	562 aa		13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	RNF113A	O15541	343 aa	Known RBP	13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	PTPN12	Q05209	780 aa	Known RBP	13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	REST	Q13127	1097 aa		13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	CCDC144B	Q3MJ40	725 aa		13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	NUP133	Q8WUM0	1156 aa		13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	PRDM11	Q9NQV5	511 aa		13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	NEMF	O60524	1076 aa		13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	LRRC24	Q50LG9	513 aa		13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	SYT10	Q6XYQ8	523 aa		13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	ARHGEF25	Q86VW2	580 aa		13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	GJB4	Q9NTQ9	266 aa		13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	SPTLC3	Q9NUV7	552 aa		13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	AKAP17A	Q02040	695 aa	Known RBP	13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	TDRD7	Q8NHU6	1098 aa	Known RBP	13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	KAZALD1	Q96I82	304 aa		13.79	□□□□□ -0.2
MSH6-204	ENST00000445503	IL15	P40933	162 aa	Predicted RBP	13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	FUCA2	Q9BTY2	467 aa		13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	TBC1D2B	Q9UPU7	963 aa		13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	PTPN21	Q16825	1174 aa		13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	TTLL7	Q6ZT98	887 aa		13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	ZNF710	Q8N1W2	664 aa		13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	JMY	Q8N9B5	988 aa		13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	NSUN7	Q8NE18	718 aa	Known RBP	13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.78	□□□□□ -0.2	2e-8	■□□□□ 9.7
MSH6-204	ENST00000445503	COPRS	Q9NQ92	184 aa		13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	LRRC8A	Q8IWT6	810 aa		13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	HAUS7	Q99871	368 aa		13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	DNAI1	Q9UI46	699 aa		13.78	□□□□□ -0.2
MSH6-204	ENST00000445503	HSPD1	P10809	573 aa	Known RBP	13.77	□□□□□ -0.2
MSH6-204	ENST00000445503	GSDMD	P57764	484 aa		13.77	□□□□□ -0.2
MSH6-204	ENST00000445503	IFIT5	Q13325	482 aa	Known RBP	13.77	□□□□□ -0.2
MSH6-204	ENST00000445503	UBXN4	Q92575	508 aa		13.77	□□□□□ -0.2
MSH6-204	ENST00000445503	ZNF215	Q9UL58	517 aa	Predicted RBP	13.77	□□□□□ -0.2
MSH6-204	ENST00000445503	SYK	P43405	635 aa		13.77	□□□□□ -0.21
MSH6-204	ENST00000445503	ELF2	Q15723	593 aa		13.77	□□□□□ -0.21
MSH6-204	ENST00000445503	KIF6	Q6ZMV9	814 aa		13.77	□□□□□ -0.21
MSH6-204	ENST00000445503	NCOA7	Q8NI08	942 aa		13.77	□□□□□ -0.21
MSH6-204	ENST00000445503	ALG1	Q9BT22	464 aa		13.77	□□□□□ -0.21
MSH6-204	ENST00000445503	PUS3	Q9BZE2	481 aa	Known RBP	13.77	□□□□□ -0.21
MSH6-204	ENST00000445503	PFKFB2	O60825	505 aa		13.77	□□□□□ -0.21
MSH6-204	ENST00000445503	PCDHA7	Q9UN72	937 aa		13.77	□□□□□ -0.21
MSH6-204	ENST00000445503	TECPR2	O15040	1411 aa		13.77	□□□□□ -0.21
MSH6-204	ENST00000445503	LDHAL6A	Q6ZMR3	332 aa		13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	RASSF8	Q8NHQ8	419 aa		13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	FAM89A	Q96GI7	184 aa		13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	USP42	Q9H9J4	1324 aa	Known RBP	13.76	□□□□□ -0.21
MSH6-204	ENST00000445503		A0A0G2JLW4	131 aa		13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	KLHL10	Q6JEL2	608 aa		13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	CNNM3	Q8NE01	707 aa		13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	LLPH	Q9BRT6	129 aa	Known RBP	13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	ARGLU1	Q9NWB6	273 aa	Predicted RBP	13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	RIMS1	Q86UR5	1692 aa	Known RBP	13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	TOP1	P11387	765 aa	Known RBP	13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	PDIA3	P30101	505 aa	Known RBP	13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	METAP2	P50579	478 aa	Known RBP eCLIP	13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	NDUFA8	P51970	172 aa		13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	UBASH3A	P57075	661 aa		13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	NAA16	Q6N069	864 aa	Predicted RBP	13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	KCNG4	Q8TDN1	519 aa		13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	CLIC4	Q9Y696	253 aa		13.76	□□□□□ -0.21
MSH6-204	ENST00000445503	ERICH2	A1L162	156 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	EYA2	O00167	538 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	AIDA	Q96BJ3	306 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	XPO4	Q9C0E2	1151 aa	Known RBP	13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	GOLPH3L	Q9H4A5	285 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	HELLS	Q9NRZ9	838 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	HOOK1	Q9UJC3	728 aa	Known RBP	13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	AKAP2	Q9Y2D5	859 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	USP27X	A6NNY8	438 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	POLR3G	O15318	223 aa	Predicted RBP	13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	SPECC1	Q5M775	1068 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	STOX1	Q6ZVD7	989 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	PLBD2	Q8NHP8	589 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	SLU7	O95391	586 aa	Known RBP	13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	PHKG2	P15735	406 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	SLC9C2	Q5TAH2	1124 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	HELB	Q8NG08	1087 aa	Predicted RBP	13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	CPLX3	Q8WVH0	158 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	TRERF1	Q96PN7	1200 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	DCAF5	Q96JK2	942 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	MYL10	Q9BUA6	226 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	SLC26A6	Q9BXS9	759 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	ZSWIM4	Q9H7M6	989 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	KAT6B	Q8WYB5	2073 aa		13.75	□□□□□ -0.21
MSH6-204	ENST00000445503	PHKB	Q93100	1093 aa		13.74	□□□□□ -0.21
MSH6-204	ENST00000445503	CCDC34	Q96HJ3	373 aa		13.74	□□□□□ -0.21
MSH6-204	ENST00000445503	TCHH	Q07283	1943 aa		13.74	□□□□□ -0.21
MSH6-204	ENST00000445503	ITSN1	Q15811	1721 aa		13.74	□□□□□ -0.21
MSH6-204	ENST00000445503	GOLGA8A	A7E2F4	631 aa		13.74	□□□□□ -0.21
MSH6-204	ENST00000445503	ZNF202	O95125	648 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms