RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 CTTNBP2Q8WZ74 1663 aa7.47□□□□□ -1.21
MCF2-205ENST00000437564 TMEM110-MUSTN1A8MSY1 372 aa7.47□□□□□ -1.21
MCF2-205ENST00000437564 BBOX1O75936 387 aa7.47□□□□□ -1.21
MCF2-205ENST00000437564 RPL13P26373 211 aaKnown RBP7.47□□□□□ -1.21
MCF2-205ENST00000437564 GCLCP48506 637 aaPredicted RBP7.47□□□□□ -1.21
MCF2-205ENST00000437564 ADCY1Q08828 1119 aa7.47□□□□□ -1.21
MCF2-205ENST00000437564 C4orf46Q504U0 113 aa7.47□□□□□ -1.21
MCF2-205ENST00000437564 CPLX2Q6PUV4 134 aaKnown RBP7.47□□□□□ -1.21
MCF2-205ENST00000437564 SAPCD2Q86UD0 394 aa7.47□□□□□ -1.21
MCF2-205ENST00000437564 IQCA1Q86XH1 822 aa7.47□□□□□ -1.21
MCF2-205ENST00000437564 GAS2L2Q8NHY3 880 aa7.47□□□□□ -1.21
MCF2-205ENST00000437564 PHACTR1Q9C0D0 580 aa7.47□□□□□ -1.21
MCF2-205ENST00000437564 NRDE2Q9H7Z3 1164 aa7.47□□□□□ -1.21
MCF2-205ENST00000437564 BAZ1AQ9NRL2 1556 aaPredicted RBP7.47□□□□□ -1.21
MCF2-205ENST00000437564 GOLGA6L9A6NEM1 432 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 SPDYE16A6NNV3 312 aaPredicted RBP7.46□□□□□ -1.21
MCF2-205ENST00000437564 SMARCA1P28370 1054 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 CLNS1AP54105 237 aaKnown RBP7.46□□□□□ -1.21
MCF2-205ENST00000437564 SH3BGRP55822 239 aaPredicted RBP7.46□□□□□ -1.21
MCF2-205ENST00000437564 C20orf194Q5TEA3 1177 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 CWF19L1Q69YN2 538 aaKnown RBP7.46□□□□□ -1.21
MCF2-205ENST00000437564 ISM2Q6H9L7 571 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 ARHGEF25Q86VW2 580 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 KIAA0825Q8IV33 1275 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 OR8K1Q8NGG5 319 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 CHMP7Q8WUX9 453 aaPredicted RBP7.46□□□□□ -1.21
MCF2-205ENST00000437564 ZFAND2BQ8WV99 257 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 ZBTB10Q96DT7 871 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 TRIM4Q9C037 500 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 LRRCC1Q9C099 1032 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 IFT122Q9HBG6 1241 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 TMEM165Q9HC07 324 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 IGSF5Q9NSI5 407 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 MRFAP1Q9Y605 127 aa7.46□□□□□ -1.21
MCF2-205ENST00000437564 ELP1O95163 1332 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 CCDC194A0A1B0GVG4 234 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 ZNF189O75820 626 aaPredicted RBP7.46□□□□□ -1.22
MCF2-205ENST00000437564 ZFXP17010 805 aaPredicted RBP7.46□□□□□ -1.22
MCF2-205ENST00000437564 USP11P51784 963 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 ST5P78524 1137 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 ROR2Q01974 943 aaKnown RBP7.46□□□□□ -1.22
MCF2-205ENST00000437564 CEP135Q66GS9 1140 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 SLC30A9Q6PML9 568 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 ANKRD13DQ6ZTN6 518 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 BRAPQ7Z569 592 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 C11orf96Q7Z7L8 435 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 DZIP1Q86YF9 867 aaKnown RBP7.46□□□□□ -1.22
MCF2-205ENST00000437564 REXO1L1PQ8IX06 675 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 MAGEC3Q8TD91 643 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 GTF3C6Q969F1 213 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 ALS2CR12Q96Q35 445 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 INO80BQ9C086 356 aaPredicted RBP7.46□□□□□ -1.22
MCF2-205ENST00000437564 BRD8Q9H0E9 1235 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 RPAP3Q9H6T3 665 aaPredicted RBP7.46□□□□□ -1.22
MCF2-205ENST00000437564 CCDC88BA6NC98 1476 aa7.46□□□□□ -1.22
MCF2-205ENST00000437564 SPDYE3A6NKU9 549 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 ATP6V1G1O75348 118 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 NEK2P51955 445 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 MECOMQ03112 1051 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 CNGA3Q16281 694 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 AMHR2Q16671 573 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 Q4G0T1 1027 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 TMCO3Q6UWJ1 677 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 CCDC50Q8IVM0 306 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 APLFQ8IW19 511 aaPredicted RBP7.45□□□□□ -1.22
MCF2-205ENST00000437564 UHMK1Q8TAS1 419 aaKnown RBP7.45□□□□□ -1.22
MCF2-205ENST00000437564 NUP133Q8WUM0 1156 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 LZICQ8WZA0 190 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 SMARCC1Q92922 1105 aaPredicted RBP7.45□□□□□ -1.22
MCF2-205ENST00000437564 EPAS1Q99814 870 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 ACBD3Q9H3P7 528 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 SENP2Q9HC62 589 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 PDRG1Q9NUG6 133 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 COMMD8Q9NX08 183 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 C6orf203Q9P0P8 240 aaPredicted RBP7.45□□□□□ -1.22
MCF2-205ENST00000437564 HDAC6Q9UBN7 1215 aa7.45□□□□□ -1.22
MCF2-205ENST00000437564 ZMAT5Q9UDW3 170 aaKnown RBP7.45□□□□□ -1.22
MCF2-205ENST00000437564 G3BP2Q9UN86 482 aaKnown RBP7.45□□□□□ -1.22
MCF2-205ENST00000437564 LRRC10BA6NIK2 292 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 TGFB3P10600 412 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 MYCLP1P12525 358 aaPredicted RBP7.44□□□□□ -1.22
MCF2-205ENST00000437564 LMAN1P49257 510 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 HDAC4P56524 1084 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 PDE4BQ07343 736 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 CCDC152Q4G0S7 254 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 DPY19L2Q6NUT2 758 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 RSPH3Q86UC2 560 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 ZNF280CQ8ND82 737 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 ENOX1Q8TC92 643 aaKnown RBP7.44□□□□□ -1.22
MCF2-205ENST00000437564 RBM41Q96IZ5 413 aaKnown RBP7.44□□□□□ -1.22
MCF2-205ENST00000437564 CRBNQ96SW2 442 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 SLC39A3Q9BRY0 314 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 TSPY26PQ9H489 355 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 GINM1Q9NU53 330 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 DNAAF2Q9NVR5 837 aaKnown RBP7.44□□□□□ -1.22
MCF2-205ENST00000437564 TMEM63CQ9P1W3 806 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 SEL1LQ9UBV2 794 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 ADAM21Q9UKJ8 722 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 MAP3K1Q13233 1512 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 PABPN1LA6NDY0 278 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms