RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 ARAP2Q8WZ64 1704 aa25.37■■□□□ 1.65
PTPRF-207ENST00000436724 RNF113AO15541 343 aaKnown RBP25.37■■□□□ 1.65
PTPRF-207ENST00000436724 DDIT3P35638 169 aa25.37■■□□□ 1.65
PTPRF-207ENST00000436724 ZMYM1Q5SVZ6 1142 aa25.37■■□□□ 1.65
PTPRF-207ENST00000436724 ZNF512BQ96KM6 892 aaPredicted RBP25.37■■□□□ 1.65
PTPRF-207ENST00000436724 BSDC1Q9NW68 430 aaPredicted RBP25.37■■□□□ 1.65
PTPRF-207ENST00000436724 TNRC6CQ9HCJ0 1690 aaKnown RBP25.36■■□□□ 1.65
PTPRF-207ENST00000436724 CPA1P15085 419 aa25.36■■□□□ 1.65
PTPRF-207ENST00000436724 PLSCR1O15162 318 aa25.35■■□□□ 1.65
PTPRF-207ENST00000436724 CYP2E1P05181 493 aaPredicted RBP25.35■■□□□ 1.65
PTPRF-207ENST00000436724 ARID4AP29374 1257 aaPredicted RBP25.35■■□□□ 1.65
PTPRF-207ENST00000436724 ZNF827Q17R98 1081 aa25.35■■□□□ 1.65
PTPRF-207ENST00000436724 CNBD1Q8NA66 436 aa25.35■■□□□ 1.65
PTPRF-207ENST00000436724 TAF6LQ9Y6J9 622 aa25.35■■□□□ 1.65
PTPRF-207ENST00000436724 SLC27A2O14975 620 aa25.35■■□□□ 1.65
PTPRF-207ENST00000436724 KCNB2Q92953 911 aa25.35■■□□□ 1.65
PTPRF-207ENST00000436724 MINPP1Q9UNW1 487 aa25.35■■□□□ 1.65
PTPRF-207ENST00000436724 BCAMP50895 628 aa25.34■■□□□ 1.65
PTPRF-207ENST00000436724 HELLSQ9NRZ9 838 aa25.34■■□□□ 1.65
PTPRF-207ENST00000436724 MAST3O60307 1309 aa25.34■■□□□ 1.65
PTPRF-207ENST00000436724 CASTP20810 708 aaKnown RBP25.34■■□□□ 1.65
PTPRF-207ENST00000436724 TM4SF1P30408 202 aa25.34■■□□□ 1.65
PTPRF-207ENST00000436724 RPS8P62241 208 aaKnown RBP25.34■■□□□ 1.65
PTPRF-207ENST00000436724 VPS53Q5VIR6 699 aa25.34■■□□□ 1.65
PTPRF-207ENST00000436724 CHMP5Q9NZZ3 219 aa25.34■■□□□ 1.65
PTPRF-207ENST00000436724 COL9A3Q14050 684 aaPredicted RBP25.33■■□□□ 1.65
PTPRF-207ENST00000436724 PRR5LQ6MZQ0 368 aa25.33■■□□□ 1.65
PTPRF-207ENST00000436724 OSBP2Q969R2 916 aa25.33■■□□□ 1.65
PTPRF-207ENST00000436724 JAKMIP1Q96N16 626 aaKnown RBP25.33■■□□□ 1.65
PTPRF-207ENST00000436724 TFCP2L1Q9NZI6 479 aa25.33■■□□□ 1.65
PTPRF-207ENST00000436724 HMG20BQ9P0W2 317 aa25.33■■□□□ 1.65
PTPRF-207ENST00000436724 MYO5AQ9Y4I1 1855 aaKnown RBP25.32■■□□□ 1.64
PTPRF-207ENST00000436724 M0R2C6 588 aa25.32■■□□□ 1.64
PTPRF-207ENST00000436724 RASGRF1Q13972 1273 aa25.32■■□□□ 1.64
PTPRF-207ENST00000436724 PIH1D3Q9NQM4 214 aaKnown RBP25.32■■□□□ 1.64
PTPRF-207ENST00000436724 UQCRFS1P1P0C7P4 283 aa25.32■■□□□ 1.64
PTPRF-207ENST00000436724 ZKSCAN1P17029 563 aaPredicted RBP25.32■■□□□ 1.64
PTPRF-207ENST00000436724 TMX3Q96JJ7 454 aa25.32■■□□□ 1.64
PTPRF-207ENST00000436724 A0A1B0GUL6 1792 aa25.32■■□□□ 1.64
PTPRF-207ENST00000436724 WASHC4Q2M389 1173 aa25.31■■□□□ 1.64
PTPRF-207ENST00000436724 SLC51AQ86UW1 340 aa25.3■■□□□ 1.64
PTPRF-207ENST00000436724 TICAM2Q86XR7 235 aa25.3■■□□□ 1.64
PTPRF-207ENST00000436724 SPATA5Q8NB90 893 aa25.3■■□□□ 1.64
PTPRF-207ENST00000436724 TTC14Q96N46 770 aa25.3■■□□□ 1.64
PTPRF-207ENST00000436724 SERPINB2P05120 415 aa25.29■■□□□ 1.64
PTPRF-207ENST00000436724 ZGPATQ8N5A5 531 aaKnown RBP25.29■■□□□ 1.64
PTPRF-207ENST00000436724 LARP6Q9BRS8 491 aaKnown RBP25.29■■□□□ 1.64
PTPRF-207ENST00000436724 IDH1O75874 414 aaKnown RBP25.29■■□□□ 1.64
PTPRF-207ENST00000436724 DDR1Q08345 913 aa25.29■■□□□ 1.64
PTPRF-207ENST00000436724 IQSEC3Q9UPP2 1182 aaPredicted RBP25.29■■□□□ 1.64
PTPRF-207ENST00000436724 GYG1P46976 350 aa25.28■■□□□ 1.64
PTPRF-207ENST00000436724 MCM2P49736 904 aa25.28■■□□□ 1.64
PTPRF-207ENST00000436724 AKT1S1Q96B36 256 aa25.28■■□□□ 1.64
PTPRF-207ENST00000436724 PUS7LQ9H0K6 701 aaKnown RBP25.28■■□□□ 1.64
PTPRF-207ENST00000436724 MYH7P12883 1935 aa25.28■■□□□ 1.64
PTPRF-207ENST00000436724 ZFYP08048 801 aaPredicted RBP25.28■■□□□ 1.64
PTPRF-207ENST00000436724 LRRFIP1Q32MZ4 808 aaKnown RBP25.28■■□□□ 1.64
PTPRF-207ENST00000436724 RNF20Q5VTR2 975 aa25.28■■□□□ 1.64
PTPRF-207ENST00000436724 HSPD1P10809 573 aaKnown RBP25.27■■□□□ 1.64
PTPRF-207ENST00000436724 AK2P54819 239 aa25.27■■□□□ 1.64
PTPRF-207ENST00000436724 TTF1Q15361 905 aaPredicted RBP25.27■■□□□ 1.64
PTPRF-207ENST00000436724 SLC9C2Q5TAH2 1124 aa25.27■■□□□ 1.64
PTPRF-207ENST00000436724 ZSWIM6Q9HCJ5 1215 aa25.27■■□□□ 1.64
PTPRF-207ENST00000436724 COL23A1Q86Y22 540 aaPredicted RBP25.27■■□□□ 1.64
PTPRF-207ENST00000436724 RPAP1Q9BWH6 1393 aaPredicted RBP25.26■■□□□ 1.63
PTPRF-207ENST00000436724 UBE4AQ14139 1066 aa25.26■■□□□ 1.63
PTPRF-207ENST00000436724 APPBP2Q92624 585 aa25.26■■□□□ 1.63
PTPRF-207ENST00000436724 TM6SF1Q9BZW5 370 aa25.26■■□□□ 1.63
PTPRF-207ENST00000436724 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.26■■□□□ 1.634e-8■■■□□ 16.3
PTPRF-207ENST00000436724 U3KPZ7 1027 aaPredicted RBP25.26■■□□□ 1.63
PTPRF-207ENST00000436724 CYP21A2P08686 494 aa25.25■■□□□ 1.63
PTPRF-207ENST00000436724 KLRK1P26718 216 aa25.25■■□□□ 1.63
PTPRF-207ENST00000436724 ADD2P35612 726 aa25.25■■□□□ 1.63
PTPRF-207ENST00000436724 WWC3Q9ULE0 1092 aa25.25■■□□□ 1.63
PTPRF-207ENST00000436724 TNS1Q9HBL0 1735 aaKnown RBP25.25■■□□□ 1.63
PTPRF-207ENST00000436724 A0A0G2JLW4 131 aa25.25■■□□□ 1.63
PTPRF-207ENST00000436724 POLRMTO00411 1230 aaKnown RBP25.25■■□□□ 1.63
PTPRF-207ENST00000436724 RUFY3Q7L099 469 aa25.25■■□□□ 1.63
PTPRF-207ENST00000436724 CYP46A1Q9Y6A2 500 aa25.25■■□□□ 1.63
PTPRF-207ENST00000436724 DSCC1Q9BVC3 393 aa25.24■■□□□ 1.63
PTPRF-207ENST00000436724 PDRG1Q9NUG6 133 aa25.24■■□□□ 1.63
PTPRF-207ENST00000436724 FOXP2O15409 715 aa25.23■■□□□ 1.63
PTPRF-207ENST00000436724 ST5P78524 1137 aa25.23■■□□□ 1.63
PTPRF-207ENST00000436724 TCEANC2Q96MN5 208 aa25.23■■□□□ 1.63
PTPRF-207ENST00000436724 CIZ1Q9ULV3 898 aaPredicted RBP25.23■■□□□ 1.63
PTPRF-207ENST00000436724 ZNF532Q9HCE3 1301 aa25.23■■□□□ 1.63
PTPRF-207ENST00000436724 TSGA10IPQ3SY00 556 aa25.22■■□□□ 1.63
PTPRF-207ENST00000436724 IL27Q8NEV9 243 aa25.22■■□□□ 1.63
PTPRF-207ENST00000436724 FBXO41Q8TF61 875 aa25.22■■□□□ 1.63
PTPRF-207ENST00000436724 ZNF804BA4D1E1 1349 aa25.22■■□□□ 1.63
PTPRF-207ENST00000436724 PDE6AP16499 860 aa25.22■■□□□ 1.63
PTPRF-207ENST00000436724 GRAPQ13588 217 aa25.22■■□□□ 1.63
PTPRF-207ENST00000436724 ZSCAN25Q6NSZ9 544 aa25.22■■□□□ 1.63
PTPRF-207ENST00000436724 GRAPLQ8TC17 118 aaPredicted RBP25.22■■□□□ 1.63
PTPRF-207ENST00000436724 FAM84BQ96KN1 310 aaPredicted RBP25.22■■□□□ 1.63
PTPRF-207ENST00000436724 GPAA1O43292 621 aa25.21■■□□□ 1.63
PTPRF-207ENST00000436724 CUL4AQ13619 759 aa25.21■■□□□ 1.63
PTPRF-207ENST00000436724 TTLL5Q6EMB2 1281 aa25.21■■□□□ 1.63
PTPRF-207ENST00000436724 PSMA5P28066 241 aa25.21■■□□□ 1.63
PTPRF-207ENST00000436724 TCRBV5S4A2TA0A5A2 114 aa25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms