RNA–Protein interactions for RNA: ENST00000431640.5

DDX56-204, Transcript of DEAD-box helicase 56, humanhuman

TSL 1 (best) BASIC

Gene DDX56, Length 1,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-204ENST00000431640 PKP1Q13835 747 aa15.34■□□□□ 0.05
DDX56-204ENST00000431640 MCMDC2Q4G0Z9 681 aa15.34■□□□□ 0.05
DDX56-204ENST00000431640 MSL1Q68DK7 614 aa15.34■□□□□ 0.05
DDX56-204ENST00000431640 LMBRD1Q9NUN5 540 aa15.34■□□□□ 0.05
DDX56-204ENST00000431640 ANKRD31Q8N7Z5 1873 aa15.34■□□□□ 0.05
DDX56-204ENST00000431640 TAF5LO75529 589 aa15.33■□□□□ 0.05
DDX56-204ENST00000431640 DNAJC2Q99543 621 aaKnown RBP15.33■□□□□ 0.05
DDX56-204ENST00000431640 HELLSQ9NRZ9 838 aa15.33■□□□□ 0.05
DDX56-204ENST00000431640 U3KPZ7 1027 aaPredicted RBP15.33■□□□□ 0.05
DDX56-204ENST00000431640 LRP5O75197 1615 aa15.33■□□□□ 0.04
DDX56-204ENST00000431640 TM4SF1P30408 202 aa15.32■□□□□ 0.04
DDX56-204ENST00000431640 IFIT5Q13325 482 aaKnown RBP15.32■□□□□ 0.04
DDX56-204ENST00000431640 PARP10Q53GL7 1025 aa15.32■□□□□ 0.04
DDX56-204ENST00000431640 CCDC158Q5M9N0 1113 aa15.32■□□□□ 0.04
DDX56-204ENST00000431640 PAG1Q9NWQ8 432 aa15.32■□□□□ 0.04
DDX56-204ENST00000431640 SMC3Q9UQE7 1217 aa15.32■□□□□ 0.04
DDX56-204ENST00000431640 TIMM10P62072 90 aa15.32■□□□□ 0.04
DDX56-204ENST00000431640 ADCK5Q3MIX3 580 aa15.32■□□□□ 0.04
DDX56-204ENST00000431640 LRRC24Q50LG9 513 aa15.32■□□□□ 0.04
DDX56-204ENST00000431640 TAF7LQ5H9L4 462 aa15.32■□□□□ 0.04
DDX56-204ENST00000431640 BLOC1S2Q6QNY1 142 aa15.32■□□□□ 0.04
DDX56-204ENST00000431640 C3orf67Q6ZVT6 689 aa15.32■□□□□ 0.04
DDX56-204ENST00000431640 CCDC24Q8N4L8 307 aa15.32■□□□□ 0.04
DDX56-204ENST00000431640 TRMT112Q9UI30 125 aaKnown RBP15.32■□□□□ 0.04
DDX56-204ENST00000431640 A0A1B0GUL7 405 aa15.31■□□□□ 0.04
DDX56-204ENST00000431640 POLRMTO00411 1230 aaKnown RBP15.31■□□□□ 0.04
DDX56-204ENST00000431640 PRPF40AO75400 957 aaKnown RBP15.31■□□□□ 0.04
DDX56-204ENST00000431640 IFIT1P09914 478 aaKnown RBP15.31■□□□□ 0.04
DDX56-204ENST00000431640 ERFEQ4G0M1 354 aa15.31■□□□□ 0.04
DDX56-204ENST00000431640 ZNF594Q96JF6 807 aaPredicted RBP15.31■□□□□ 0.04
DDX56-204ENST00000431640 SH3TC1Q8TE82 1336 aa15.31■□□□□ 0.04
DDX56-204ENST00000431640 RPAP1Q9BWH6 1393 aaPredicted RBP15.31■□□□□ 0.04
DDX56-204ENST00000431640 COL11A2P13942 1736 aaPredicted RBP15.31■□□□□ 0.04
DDX56-204ENST00000431640 MBD3O95983 291 aa15.3■□□□□ 0.04
DDX56-204ENST00000431640 XRCC6P12956 609 aaKnown RBP eCLIP15.3■□□□□ 0.04
DDX56-204ENST00000431640 HCLS1P14317 486 aaPredicted RBP15.3■□□□□ 0.04
DDX56-204ENST00000431640 FLAD1Q8NFF5 587 aa15.3■□□□□ 0.04
DDX56-204ENST00000431640 UTP14AQ9BVJ6 771 aaKnown RBP15.3■□□□□ 0.04
DDX56-204ENST00000431640 ATP6V1DQ9Y5K8 247 aa15.3■□□□□ 0.04
DDX56-204ENST00000431640 SPEF2Q9C093 1822 aa15.3■□□□□ 0.04
DDX56-204ENST00000431640 ZNF609O15014 1411 aa15.3■□□□□ 0.04
DDX56-204ENST00000431640 RPS6KB1P23443 525 aa15.29■□□□□ 0.04
DDX56-204ENST00000431640 HMGB2P26583 209 aaKnown RBP15.29■□□□□ 0.04
DDX56-204ENST00000431640 GORABQ5T7V8 394 aa15.29■□□□□ 0.04
DDX56-204ENST00000431640 ZNF589Q86UQ0 364 aaPredicted RBP15.29■□□□□ 0.04
DDX56-204ENST00000431640 EDC3Q96F86 508 aaKnown RBP15.29■□□□□ 0.04
DDX56-204ENST00000431640 SETDB2Q96T68 719 aa15.29■□□□□ 0.04
DDX56-204ENST00000431640 GRPEL1Q9HAV7 217 aa15.29■□□□□ 0.04
DDX56-204ENST00000431640 TAF1P21675 1872 aa15.29■□□□□ 0.04
DDX56-204ENST00000431640 ANKRD18BA2A2Z9 1011 aa15.28■□□□□ 0.04
DDX56-204ENST00000431640 GOLIM4O00461 696 aa15.28■□□□□ 0.04
DDX56-204ENST00000431640 IRS4O14654 1257 aaPredicted RBP15.28■□□□□ 0.04
DDX56-204ENST00000431640 PDE8AO60658 829 aa15.28■□□□□ 0.04
DDX56-204ENST00000431640 R3HDM1Q15032 1099 aaKnown RBP15.28■□□□□ 0.04
DDX56-204ENST00000431640 DDX46Q7L014 1031 aaKnown RBP15.28■□□□□ 0.04
DDX56-204ENST00000431640 PUS3Q9BZE2 481 aaKnown RBP15.28■□□□□ 0.04
DDX56-204ENST00000431640 RNF113AO15541 343 aaKnown RBP15.28■□□□□ 0.04
DDX56-204ENST00000431640 ZFYP08048 801 aaPredicted RBP15.28■□□□□ 0.04
DDX56-204ENST00000431640 HMGB1P09429 215 aaKnown RBP15.28■□□□□ 0.04
DDX56-204ENST00000431640 HSP90B1P14625 803 aaKnown RBP15.28■□□□□ 0.04
DDX56-204ENST00000431640 NCLP19338 710 aaKnown RBP15.28■□□□□ 0.04
DDX56-204ENST00000431640 TTC39AQ5SRH9 613 aa15.28■□□□□ 0.04
DDX56-204ENST00000431640 ZMYM1Q5SVZ6 1142 aa15.28■□□□□ 0.04
DDX56-204ENST00000431640 PRR5LQ6MZQ0 368 aa15.28■□□□□ 0.04
DDX56-204ENST00000431640 TTLL11Q8NHH1 800 aa15.28■□□□□ 0.04
DDX56-204ENST00000431640 DSCC1Q9BVC3 393 aa15.28■□□□□ 0.04
DDX56-204ENST00000431640 BRPF3Q9ULD4 1205 aa15.28■□□□□ 0.04
DDX56-204ENST00000431640 RIC1Q4ADV7 1423 aa15.27■□□□□ 0.03
DDX56-204ENST00000431640 PSDA5PKW4 1024 aaPredicted RBP15.27■□□□□ 0.03
DDX56-204ENST00000431640 STX6O43752 255 aa15.27■□□□□ 0.03
DDX56-204ENST00000431640 MMP10P09238 476 aa15.27■□□□□ 0.03
DDX56-204ENST00000431640 ZSCAN22P10073 491 aaPredicted RBP15.27■□□□□ 0.03
DDX56-204ENST00000431640 CPA1P15085 419 aa15.27■□□□□ 0.03
DDX56-204ENST00000431640 CTSWP56202 376 aa15.27■□□□□ 0.03
DDX56-204ENST00000431640 ZNF445P59923 1031 aa15.27■□□□□ 0.03
DDX56-204ENST00000431640 NBPF5PQ86XG9 351 aaPredicted RBP15.27■□□□□ 0.03
DDX56-204ENST00000431640 XAGE2Q96GT9 111 aa15.27■□□□□ 0.03
DDX56-204ENST00000431640 CCDC85AQ96PX6 553 aaPredicted RBP15.27■□□□□ 0.03
DDX56-204ENST00000431640 NEK1Q96PY6 1258 aa15.27■□□□□ 0.03
DDX56-204ENST00000431640 SERPINB2P05120 415 aa15.26■□□□□ 0.03
DDX56-204ENST00000431640 LDHAL6AQ6ZMR3 332 aa15.26■□□□□ 0.03
DDX56-204ENST00000431640 CCDC83Q8IWF9 413 aa15.26■□□□□ 0.03
DDX56-204ENST00000431640 ZNF512BQ96KM6 892 aaPredicted RBP15.26■□□□□ 0.03
DDX56-204ENST00000431640 RIPOR2Q9Y4F9 1068 aa15.26■□□□□ 0.03
DDX56-204ENST00000431640 A0A1B0GUL6 1792 aa15.26■□□□□ 0.03
DDX56-204ENST00000431640 PDCP20941 246 aa15.25■□□□□ 0.03
DDX56-204ENST00000431640 SYT1P21579 422 aa15.25■□□□□ 0.03
DDX56-204ENST00000431640 ITGA6P23229 1130 aa15.25■□□□□ 0.03
DDX56-204ENST00000431640 ME3Q16798 604 aa15.25■□□□□ 0.03
DDX56-204ENST00000431640 FOXD4L5Q5VV16 416 aaPredicted RBP15.25■□□□□ 0.03
DDX56-204ENST00000431640 SLC51AQ86UW1 340 aa15.25■□□□□ 0.03
DDX56-204ENST00000431640 NLGN1Q8N2Q7 840 aa15.25■□□□□ 0.03
DDX56-204ENST00000431640 FOXD4L4Q8WXT5 416 aaPredicted RBP15.25■□□□□ 0.03
DDX56-204ENST00000431640 KIAA1551Q9HCM1 1747 aa15.25■□□□□ 0.03
DDX56-204ENST00000431640 GJB2P29033 226 aa15.24■□□□□ 0.03
DDX56-204ENST00000431640 CSPP1Q1MSJ5 1256 aa15.24■□□□□ 0.03
DDX56-204ENST00000431640 METTL24Q5JXM2 366 aa15.24■□□□□ 0.03
DDX56-204ENST00000431640 CNBD1Q8NA66 436 aa15.24■□□□□ 0.03
DDX56-204ENST00000431640 SYAP1Q96A49 352 aaPredicted RBP15.24■□□□□ 0.03
DDX56-204ENST00000431640 CHMP4CQ96CF2 233 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms