RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 CBX1P83916 185 aa8.5□□□□□ -1.05
COL28A1-202ENST00000430711 PTPN21Q16825 1174 aa8.5□□□□□ -1.05
COL28A1-202ENST00000430711 USPL1Q5W0Q7 1092 aa8.5□□□□□ -1.05
COL28A1-202ENST00000430711 PI16Q6UXB8 463 aa8.5□□□□□ -1.05
COL28A1-202ENST00000430711 FAM200AQ8TCP9 573 aa8.5□□□□□ -1.05
COL28A1-202ENST00000430711 ZSCAN31Q96LW9 406 aaPredicted RBP8.5□□□□□ -1.05
COL28A1-202ENST00000430711 C16orf45Q96MC5 204 aaPredicted RBP8.5□□□□□ -1.05
COL28A1-202ENST00000430711 METTL22Q9BUU2 404 aaPredicted RBP8.5□□□□□ -1.05
COL28A1-202ENST00000430711 TNMDQ9H2S6 317 aa8.5□□□□□ -1.05
COL28A1-202ENST00000430711 GOLIM4O00461 696 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 LMBR1LQ6UX01 489 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 ATG9AQ7Z3C6 839 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 GPATCH3Q96I76 525 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 USP28Q96RU2 1077 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 A0A087WZG4 1122 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 UBE2Q2LH0YL09 131 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 M0R2C6 588 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 CCDC192P0DO97 292 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 HSP90B1P14625 803 aaKnown RBP8.49□□□□□ -1.05
COL28A1-202ENST00000430711 FOXO4P98177 505 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 AMOTQ4VCS5 1084 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 ANKRD13DQ6ZTN6 518 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 KRT28Q7Z3Y7 464 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 ERC1Q8IUD2 1116 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 KCNH5Q8NCM2 988 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 NSUN7Q8NE18 718 aaKnown RBP8.49□□□□□ -1.05
COL28A1-202ENST00000430711 NEK1Q96PY6 1258 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 CLSTN2Q9H4D0 955 aa8.49□□□□□ -1.05
COL28A1-202ENST00000430711 U2AF2P26368 475 aaKnown RBP eCLIP8.48□□□□□ -1.05
COL28A1-202ENST00000430711 ZNF75DP51815 510 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 HAND2P61296 217 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 SCARF1Q14162 830 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 RBM43Q6ZSC3 357 aaKnown RBP8.48□□□□□ -1.05
COL28A1-202ENST00000430711 PLA2G4DQ86XP0 818 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 SYNE4Q8N205 404 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 BICD2Q8TD16 824 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 NGLY1Q96IV0 654 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 ZHX1Q9UKY1 873 aaPredicted RBP8.48□□□□□ -1.05
COL28A1-202ENST00000430711 MYO5AQ9Y4I1 1855 aaKnown RBP8.48□□□□□ -1.05
COL28A1-202ENST00000430711 COL18A1P39060 1754 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 ELP1O95163 1332 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 NEDD4P46934 1319 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 FDPSP14324 419 aaKnown RBP8.48□□□□□ -1.05
COL28A1-202ENST00000430711 ATP5JP18859 108 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 ADORA1P30542 326 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 SNW1Q13573 536 aaKnown RBP8.48□□□□□ -1.05
COL28A1-202ENST00000430711 IQCB1Q15051 598 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 ZSCAN25Q6NSZ9 544 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 COPRSQ9NQ92 184 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 SLAIN2Q9P270 581 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 ALS2Q96Q42 1657 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 BCL9LQ86UU0 1499 aa8.48□□□□□ -1.05
COL28A1-202ENST00000430711 PTPDC1A2A3K4 754 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 A1BGP04217 495 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 GTF2F1P35269 517 aaKnown RBP eCLIP8.47□□□□□ -1.05
COL28A1-202ENST00000430711 RABL6Q3YEC7 729 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-202ENST00000430711 PPP4R3BQ5MIZ7 849 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 LRRN4CLQ8ND94 238 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 NEUROD6Q96NK8 337 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 ZBTB3Q9H5J0 574 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 QTRT2Q9H974 415 aaKnown RBP8.47□□□□□ -1.05
COL28A1-202ENST00000430711 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.47□□□□□ -1.05
COL28A1-202ENST00000430711 NAP1L2Q9ULW6 460 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-202ENST00000430711 ATP6V1DQ9Y5K8 247 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 V9GYY5 206 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-202ENST00000430711 MAST3O60307 1309 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 ZNF165P49910 485 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 VASPP50552 380 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-202ENST00000430711 HMGN5P82970 282 aaKnown RBP8.47□□□□□ -1.05
COL28A1-202ENST00000430711 GLIPR1L2Q4G1C9 344 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 SMARCC2Q8TAQ2 1214 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 AIFM3Q96NN9 605 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 HAUS7Q99871 368 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 TRIM5Q9C035 493 aa8.47□□□□□ -1.05
COL28A1-202ENST00000430711 OVOS2A0A0G2JMS6 1433 aa8.46□□□□□ -1.05
COL28A1-202ENST00000430711 NUP188Q5SRE5 1749 aa8.46□□□□□ -1.05
COL28A1-202ENST00000430711 LETM1O95202 739 aaPredicted RBP8.46□□□□□ -1.05
COL28A1-202ENST00000430711 ZSCAN20P17040 1043 aaPredicted RBP8.46□□□□□ -1.05
COL28A1-202ENST00000430711 PSMA5P28066 241 aa8.46□□□□□ -1.05
COL28A1-202ENST00000430711 NCBP1Q09161 790 aaKnown RBP8.46□□□□□ -1.05
COL28A1-202ENST00000430711 TSGA10IPQ3SY00 556 aa8.46□□□□□ -1.05
COL28A1-202ENST00000430711 TDRD7Q8NHU6 1098 aaKnown RBP8.46□□□□□ -1.05
COL28A1-202ENST00000430711 SENP2Q9HC62 589 aa8.46□□□□□ -1.05
COL28A1-202ENST00000430711 SALL1Q9NSC2 1324 aa8.46□□□□□ -1.06
COL28A1-202ENST00000430711 C1orf167Q5SNV9 1468 aa8.46□□□□□ -1.06
COL28A1-202ENST00000430711 KIF28PB7ZC32 967 aa8.46□□□□□ -1.06
COL28A1-202ENST00000430711 DDX58O95786 925 aaKnown RBP8.46□□□□□ -1.06
COL28A1-202ENST00000430711 MCMDC2Q4G0Z9 681 aa8.46□□□□□ -1.06
COL28A1-202ENST00000430711 IFNLR1Q8IU57 520 aaPredicted RBP8.46□□□□□ -1.06
COL28A1-202ENST00000430711 DHX40Q8IX18 779 aaKnown RBP8.46□□□□□ -1.06
COL28A1-202ENST00000430711 OSBP2Q969R2 916 aa8.46□□□□□ -1.06
COL28A1-202ENST00000430711 CCDC94Q9BW85 323 aaPredicted RBP8.46□□□□□ -1.06
COL28A1-202ENST00000430711 ABCC6O95255 1503 aa8.45□□□□□ -1.06
COL28A1-202ENST00000430711 A0A1B0GVL5 298 aa8.45□□□□□ -1.06
COL28A1-202ENST00000430711 E7EWF7 191 aa8.45□□□□□ -1.06
COL28A1-202ENST00000430711 HSPD1P10809 573 aaKnown RBP8.45□□□□□ -1.06
COL28A1-202ENST00000430711 RXRAP19793 462 aa8.45□□□□□ -1.06
COL28A1-202ENST00000430711 EXOSC10Q01780 885 aaKnown RBP8.45□□□□□ -1.06
COL28A1-202ENST00000430711 ISM2Q6H9L7 571 aa8.45□□□□□ -1.06
COL28A1-202ENST00000430711 CCAR1Q8IX12 1150 aaKnown RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms