RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 F11P03951 625 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 SOX18P35713 384 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 COL9A2Q14055 689 aaPredicted RBP6.01□□□□□ -1.45
HMGB3-203ENST00000430118 SCARF1Q14162 830 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 EFHC2Q5JST6 749 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 C1orf127Q8N9H9 656 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 C3orf58Q8NDZ4 430 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 OR13H1Q8NG92 308 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 DHX38Q92620 1227 aaKnown RBP6.01□□□□□ -1.45
HMGB3-203ENST00000430118 KLRG1Q96E93 195 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 DNAJC2Q99543 621 aaKnown RBP6.01□□□□□ -1.45
HMGB3-203ENST00000430118 STRIP2Q9ULQ0 834 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 TMA7Q9Y2S6 64 aaKnown RBP6.01□□□□□ -1.45
HMGB3-203ENST00000430118 TNIKQ9UKE5 1360 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 UHRF1BP1LA0JNW5 1464 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 SOS2Q07890 1332 aaPredicted RBP6□□□□□ -1.45
HMGB3-203ENST00000430118 EPRSP07814 1512 aaKnown RBP6□□□□□ -1.45
HMGB3-203ENST00000430118 STK10O94804 968 aaKnown RBP6□□□□□ -1.45
HMGB3-203ENST00000430118 PAK2Q13177 524 aa6□□□□□ -1.45
HMGB3-203ENST00000430118 MCF2L2Q86YR7 1114 aa6□□□□□ -1.45
HMGB3-203ENST00000430118 GLIS3Q8NEA6 775 aa6□□□□□ -1.45
HMGB3-203ENST00000430118 CNTN3Q9P232 1028 aa6□□□□□ -1.45
HMGB3-203ENST00000430118 TTF2Q9UNY4 1162 aaKnown RBP6□□□□□ -1.45
HMGB3-203ENST00000430118 KCNH4Q9UQ05 1017 aa6□□□□□ -1.45
HMGB3-203ENST00000430118 USP20Q9Y2K6 914 aa6□□□□□ -1.45
HMGB3-203ENST00000430118 PCF11O94913 1555 aaKnown RBP6□□□□□ -1.45
HMGB3-203ENST00000430118 SPATA31D1Q6ZQQ2 1576 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 A0A1W2PP55 124 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 PHF20L1A8MW92 1017 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 EFSO43281 561 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 AVPP01185 164 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 CCINQ13939 588 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 CTC1Q2NKJ3 1217 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 GIMAP6Q6P9H5 292 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 SV2BQ7L1I2 683 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 KIAA0825Q8IV33 1275 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.99□□□□□ -1.45
HMGB3-203ENST00000430118 EHD4Q9H223 541 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 KCNQ5Q9NR82 932 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 SALL4Q9UJQ4 1053 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 UACAQ9BZF9 1416 aa5.99□□□□□ -1.45
HMGB3-203ENST00000430118 KIF4AO95239 1232 aa5.98□□□□□ -1.45
HMGB3-203ENST00000430118 SMCPP49901 116 aaPredicted RBP5.98□□□□□ -1.45
HMGB3-203ENST00000430118 NFE2L2Q16236 605 aa5.98□□□□□ -1.45
HMGB3-203ENST00000430118 CCDC144BQ3MJ40 725 aa5.98□□□□□ -1.45
HMGB3-203ENST00000430118 RELL1Q8IUW5 271 aa5.98□□□□□ -1.45
HMGB3-203ENST00000430118 SPON2Q9BUD6 331 aa5.98□□□□□ -1.45
HMGB3-203ENST00000430118 CEP44Q9C0F1 390 aa5.98□□□□□ -1.45
HMGB3-203ENST00000430118 OSBPL2Q9H1P3 480 aa5.98□□□□□ -1.45
HMGB3-203ENST00000430118 AAASQ9NRG9 546 aa5.98□□□□□ -1.45
HMGB3-203ENST00000430118 KBTBD4Q9NVX7 518 aa5.98□□□□□ -1.45
HMGB3-203ENST00000430118 KIF21BO75037 1637 aa5.98□□□□□ -1.45
HMGB3-203ENST00000430118 CFAP43Q8NDM7 1665 aa5.98□□□□□ -1.45
HMGB3-203ENST00000430118 PTPRMP28827 1452 aa5.97□□□□□ -1.45
HMGB3-203ENST00000430118 COL17A1Q9UMD9 1497 aaPredicted RBP5.97□□□□□ -1.45
HMGB3-203ENST00000430118 WDR7Q9Y4E6 1490 aa5.97□□□□□ -1.45
HMGB3-203ENST00000430118 TLDC2A0PJX2 215 aa5.97□□□□□ -1.45
HMGB3-203ENST00000430118 ST8SIA5O15466 376 aa5.97□□□□□ -1.45
HMGB3-203ENST00000430118 MAP3K6O95382 1288 aa5.97□□□□□ -1.45
HMGB3-203ENST00000430118 POLR3DP05423 398 aaPredicted RBP5.97□□□□□ -1.45
HMGB3-203ENST00000430118 CDK11BP21127 795 aaKnown RBP5.97□□□□□ -1.45
HMGB3-203ENST00000430118 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.97□□□□□ -1.456e-7■■□□□ 14.3
HMGB3-203ENST00000430118 C6orf118Q5T5N4 469 aa5.97□□□□□ -1.45
HMGB3-203ENST00000430118 PEAR1Q5VY43 1037 aaPredicted RBP5.97□□□□□ -1.45
HMGB3-203ENST00000430118 MKL1Q969V6 931 aa5.97□□□□□ -1.45
HMGB3-203ENST00000430118 TMEM74Q96NL1 305 aa5.97□□□□□ -1.45
HMGB3-203ENST00000430118 GSX2Q9BZM3 304 aa5.97□□□□□ -1.45
HMGB3-203ENST00000430118 CDK11AQ9UQ88 783 aaPredicted RBP5.97□□□□□ -1.45
HMGB3-203ENST00000430118 KDM5BQ9UGL1 1544 aa5.97□□□□□ -1.45
HMGB3-203ENST00000430118 IQGAP2Q13576 1575 aa5.97□□□□□ -1.45
HMGB3-203ENST00000430118 MAGI3Q5TCQ9 1506 aa5.96□□□□□ -1.46
HMGB3-203ENST00000430118 TMEM238LA0A1B0GVL6 79 aa5.96□□□□□ -1.46
HMGB3-203ENST00000430118 RHOQP17081 205 aa5.96□□□□□ -1.46
HMGB3-203ENST00000430118 CCDC85BQ15834 202 aaPredicted RBP5.96□□□□□ -1.46
HMGB3-203ENST00000430118 CCNJLQ8IV13 435 aa5.96□□□□□ -1.46
HMGB3-203ENST00000430118 CKAP2LQ8IYA6 745 aa5.96□□□□□ -1.46
HMGB3-203ENST00000430118 GMCL1Q96IK5 515 aa5.96□□□□□ -1.46
HMGB3-203ENST00000430118 NT5C1AQ9BXI3 368 aa5.96□□□□□ -1.46
HMGB3-203ENST00000430118 OXCT2Q9BYC2 517 aaPredicted RBP5.96□□□□□ -1.46
HMGB3-203ENST00000430118 LIN7BQ9HAP6 207 aa5.96□□□□□ -1.46
HMGB3-203ENST00000430118 ABCB6Q9NP58 842 aa5.96□□□□□ -1.46
HMGB3-203ENST00000430118 PCDHGC4Q9Y5F7 938 aa5.96□□□□□ -1.46
HMGB3-203ENST00000430118 ZCCHC11Q5TAX3 1644 aaKnown RBP5.96□□□□□ -1.46
HMGB3-203ENST00000430118 H7C1W4 665 aa5.95□□□□□ -1.46
HMGB3-203ENST00000430118 ATXN7O15265 892 aaPredicted RBP5.95□□□□□ -1.46
HMGB3-203ENST00000430118 MMP20O60882 483 aa5.95□□□□□ -1.46
HMGB3-203ENST00000430118 PSAPP07602 524 aa5.95□□□□□ -1.46
HMGB3-203ENST00000430118 RARAP10276 462 aa5.95□□□□□ -1.46
HMGB3-203ENST00000430118 ITPKAP23677 461 aa5.95□□□□□ -1.46
HMGB3-203ENST00000430118 EIF4A3P38919 411 aaKnown RBP5.95□□□□□ -1.46
HMGB3-203ENST00000430118 SOX9P48436 509 aa5.95□□□□□ -1.46
HMGB3-203ENST00000430118 RPS26P62854 115 aaKnown RBP5.95□□□□□ -1.46
HMGB3-203ENST00000430118 HYAL2Q12891 473 aa5.95□□□□□ -1.46
HMGB3-203ENST00000430118 NFX1Q12986 1120 aaKnown RBP5.95□□□□□ -1.46
HMGB3-203ENST00000430118 RPS26P11Q5JNZ5 115 aaPredicted RBP5.95□□□□□ -1.46
HMGB3-203ENST00000430118 CRIPAKQ8N1N5 446 aa5.95□□□□□ -1.46
HMGB3-203ENST00000430118 RHOVQ96L33 236 aa5.95□□□□□ -1.46
HMGB3-203ENST00000430118 ZCCHC2Q9C0B9 1178 aaKnown RBP5.95□□□□□ -1.46
HMGB3-203ENST00000430118 BHLHE41Q9C0J9 482 aaPredicted RBP5.95□□□□□ -1.46
HMGB3-203ENST00000430118 RUBCNLQ9H714 662 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms