RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 KCNH5Q8NCM2 988 aa14.56□□□□□ -0.08
CDH3-202ENST00000429102 HMG20BQ9P0W2 317 aa14.56□□□□□ -0.08
CDH3-202ENST00000429102 ATP1A3P13637 1013 aa14.55□□□□□ -0.08
CDH3-202ENST00000429102 KRT28Q7Z3Y7 464 aa14.55□□□□□ -0.08
CDH3-202ENST00000429102 ANO10Q9NW15 660 aa14.55□□□□□ -0.08
CDH3-202ENST00000429102 UBE2Q2LH0YL09 131 aa14.55□□□□□ -0.08
CDH3-202ENST00000429102 POLR3GO15318 223 aaPredicted RBP14.55□□□□□ -0.08
CDH3-202ENST00000429102 SERPINC1P01008 464 aa14.55□□□□□ -0.08
CDH3-202ENST00000429102 HSPD1P10809 573 aaKnown RBP14.55□□□□□ -0.08
CDH3-202ENST00000429102 TATP17735 454 aaPredicted RBP14.55□□□□□ -0.08
CDH3-202ENST00000429102 ATP5JP18859 108 aa14.55□□□□□ -0.08
CDH3-202ENST00000429102 ADORA1P30542 326 aa14.55□□□□□ -0.08
CDH3-202ENST00000429102 IQCB1Q15051 598 aa14.55□□□□□ -0.08
CDH3-202ENST00000429102 RRP12Q5JTH9 1297 aaKnown RBP14.55□□□□□ -0.08
CDH3-202ENST00000429102 PHKBQ93100 1093 aa14.55□□□□□ -0.08
CDH3-202ENST00000429102 PLEKHG1Q9ULL1 1385 aa14.55□□□□□ -0.08
CDH3-202ENST00000429102 C3P01024 1663 aa14.55□□□□□ -0.08
CDH3-202ENST00000429102 EPB41L2O43491 1005 aaKnown RBP14.54□□□□□ -0.08
CDH3-202ENST00000429102 MICU3Q86XE3 530 aa14.54□□□□□ -0.08
CDH3-202ENST00000429102 SYNE4Q8N205 404 aa14.54□□□□□ -0.08
CDH3-202ENST00000429102 ZFP91Q96JP5 570 aaPredicted RBP14.54□□□□□ -0.08
CDH3-202ENST00000429102 ZNF396Q96N95 335 aaPredicted RBP14.54□□□□□ -0.08
CDH3-202ENST00000429102 ZNF609O15014 1411 aa14.54□□□□□ -0.08
CDH3-202ENST00000429102 GPTP24298 496 aa14.54□□□□□ -0.08
CDH3-202ENST00000429102 GTF2F1P35269 517 aaKnown RBP eCLIP14.54□□□□□ -0.08
CDH3-202ENST00000429102 BABAM1Q9NWV8 329 aa14.54□□□□□ -0.08
CDH3-202ENST00000429102 DNAI1Q9UI46 699 aa14.54□□□□□ -0.08
CDH3-202ENST00000429102 ELP1O95163 1332 aa14.54□□□□□ -0.08
CDH3-202ENST00000429102 CEMIPQ8WUJ3 1361 aa14.54□□□□□ -0.08
CDH3-202ENST00000429102 HOXB7P09629 217 aa14.54□□□□□ -0.08
CDH3-202ENST00000429102 PDIA3P30101 505 aaKnown RBP14.54□□□□□ -0.08
CDH3-202ENST00000429102 CFAP100Q494V2 611 aa14.54□□□□□ -0.08
CDH3-202ENST00000429102 RALYLQ86SE5 291 aaKnown RBP14.54□□□□□ -0.08
CDH3-202ENST00000429102 ZSCAN16Q9H4T2 348 aaPredicted RBP14.54□□□□□ -0.08
CDH3-202ENST00000429102 ITSN1Q15811 1721 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 A0A1B0GUL7 405 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 ADD1P35611 737 aaKnown RBP14.53□□□□□ -0.08
CDH3-202ENST00000429102 KBTBD3Q8NAB2 608 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 USP42Q9H9J4 1324 aaKnown RBP14.53□□□□□ -0.08
CDH3-202ENST00000429102 M0R2C6 588 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 NPHP4O75161 1426 aaPredicted RBP14.53□□□□□ -0.08
CDH3-202ENST00000429102 SNW1Q13573 536 aaKnown RBP14.53□□□□□ -0.08
CDH3-202ENST00000429102 NFXL1Q6ZNB6 911 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 CMTR1Q8N1G2 835 aaKnown RBP14.53□□□□□ -0.08
CDH3-202ENST00000429102 MRPS27Q92552 414 aaKnown RBP14.53□□□□□ -0.08
CDH3-202ENST00000429102 PXDNQ92626 1479 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 CLIC6Q96NY7 704 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 NRXN3Q9Y4C0 1643 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 TECPR2O15040 1411 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 IDH1O75874 414 aaKnown RBP14.53□□□□□ -0.08
CDH3-202ENST00000429102 URI1O94763 535 aaPredicted RBP14.53□□□□□ -0.08
CDH3-202ENST00000429102 SLC3A2P08195 630 aaKnown RBP14.53□□□□□ -0.08
CDH3-202ENST00000429102 FAM160A1Q05DH4 1040 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 TTC39AQ5SRH9 613 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 KIF18AQ8NI77 898 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 OSBP2Q969R2 916 aa14.53□□□□□ -0.08
CDH3-202ENST00000429102 SFPQP23246 707 aaKnown RBP eCLIP14.52□□□□□ -0.08
CDH3-202ENST00000429102 KMT5BQ4FZB7 885 aa14.52□□□□□ -0.08
CDH3-202ENST00000429102 ARHGEF25Q86VW2 580 aa14.52□□□□□ -0.08
CDH3-202ENST00000429102 DHX40Q8IX18 779 aaKnown RBP14.52□□□□□ -0.08
CDH3-202ENST00000429102 HELBQ8NG08 1087 aaPredicted RBP14.52□□□□□ -0.08
CDH3-202ENST00000429102 FAM89AQ96GI7 184 aa14.52□□□□□ -0.08
CDH3-202ENST00000429102 SLC52A2Q9HAB3 445 aa14.52□□□□□ -0.09
CDH3-202ENST00000429102 PRC1O43663 620 aa14.52□□□□□ -0.09
CDH3-202ENST00000429102 SNRPA1P09661 255 aaKnown RBP14.52□□□□□ -0.09
CDH3-202ENST00000429102 FBXO38Q6PIJ6 1188 aa14.52□□□□□ -0.09
CDH3-202ENST00000429102 PROSER2Q86WR7 435 aaPredicted RBP14.52□□□□□ -0.09
CDH3-202ENST00000429102 SNAP23O00161 211 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 CEP126Q9P2H0 1117 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 VGLL3A8MV65 326 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 ANKRD7Q92527 254 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 KCNB2Q92953 911 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 IL17RAQ96F46 866 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 NAT10Q9H0A0 1025 aaKnown RBP14.51□□□□□ -0.09
CDH3-202ENST00000429102 CTNNA3Q9UI47 895 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 KAT6BQ8WYB5 2073 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 PFKFB2O60825 505 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 COBLO75128 1261 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 CPLX3Q8WVH0 158 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 HAUS7Q99871 368 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 ZKSCAN3Q9BRR0 538 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 UTP14AQ9BVJ6 771 aaKnown RBP14.51□□□□□ -0.09
CDH3-202ENST00000429102 PAXBP1Q9Y5B6 917 aa14.51□□□□□ -0.09
CDH3-202ENST00000429102 MED23Q9ULK4 1368 aa14.5□□□□□ -0.09
CDH3-202ENST00000429102 SPTLC2O15270 562 aa14.5□□□□□ -0.09
CDH3-202ENST00000429102 SCARF1Q14162 830 aa14.5□□□□□ -0.09
CDH3-202ENST00000429102 ZNF827Q17R98 1081 aa14.5□□□□□ -0.09
CDH3-202ENST00000429102 SPATA31D1Q6ZQQ2 1576 aa14.5□□□□□ -0.09
CDH3-202ENST00000429102 MAST3O60307 1309 aa14.5□□□□□ -0.09
CDH3-202ENST00000429102 STRN4Q9NRL3 753 aa14.5□□□□□ -0.09
CDH3-202ENST00000429102 RCOR1Q9UKL0 485 aa14.5□□□□□ -0.09
CDH3-202ENST00000429102 MON2Q7Z3U7 1717 aa14.5□□□□□ -0.09
CDH3-202ENST00000429102 ZNF202O95125 648 aa14.49□□□□□ -0.09
CDH3-202ENST00000429102 FDPSP14324 419 aaKnown RBP14.49□□□□□ -0.09
CDH3-202ENST00000429102 PNOCQ13519 176 aa14.49□□□□□ -0.09
CDH3-202ENST00000429102 SKIDA1Q1XH10 827 aa14.49□□□□□ -0.09
CDH3-202ENST00000429102 ILDR1Q86SU0 546 aaPredicted RBP14.49□□□□□ -0.09
CDH3-202ENST00000429102 COPRSQ9NQ92 184 aa14.49□□□□□ -0.09
CDH3-202ENST00000429102 ZAP70P43403 619 aa14.49□□□□□ -0.09
CDH3-202ENST00000429102 ANKLE2Q86XL3 938 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms