RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 NBPF5PQ86XG9 351 aaPredicted RBP11.34□□□□□ -0.59
HMGB4-201ENST00000425537 ANKRD18AQ8IVF6 992 aa11.34□□□□□ -0.59
HMGB4-201ENST00000425537 SYNE4Q8N205 404 aa11.34□□□□□ -0.59
HMGB4-201ENST00000425537 MAP4K1Q92918 833 aa11.34□□□□□ -0.59
HMGB4-201ENST00000425537 RIC1Q4ADV7 1423 aa11.34□□□□□ -0.59
HMGB4-201ENST00000425537 ARAP2Q8WZ64 1704 aa11.33□□□□□ -0.6
HMGB4-201ENST00000425537 NPHP1O15259 732 aa11.33□□□□□ -0.6
HMGB4-201ENST00000425537 RNF113AO15541 343 aaKnown RBP11.33□□□□□ -0.6
HMGB4-201ENST00000425537 NUCB2P80303 420 aa11.33□□□□□ -0.6
HMGB4-201ENST00000425537 BICDL1Q6ZP65 573 aa11.33□□□□□ -0.6
HMGB4-201ENST00000425537 KCNB2Q92953 911 aa11.33□□□□□ -0.6
HMGB4-201ENST00000425537 NLRP3Q96P20 1036 aa11.33□□□□□ -0.6
HMGB4-201ENST00000425537 RBM8AQ9Y5S9 174 aaKnown RBP11.33□□□□□ -0.6
HMGB4-201ENST00000425537 SNX14Q9Y5W7 946 aa11.33□□□□□ -0.6
HMGB4-201ENST00000425537 CYP46A1Q9Y6A2 500 aa11.33□□□□□ -0.6
HMGB4-201ENST00000425537 COL24A1Q17RW2 1714 aa11.32□□□□□ -0.6
HMGB4-201ENST00000425537 A0A0D9SFI3 127 aa11.32□□□□□ -0.6
HMGB4-201ENST00000425537 NECTIN1Q15223 517 aa11.32□□□□□ -0.6
HMGB4-201ENST00000425537 ANKRD1Q15327 319 aa11.32□□□□□ -0.6
HMGB4-201ENST00000425537 NFKBIBQ15653 356 aa11.32□□□□□ -0.6
HMGB4-201ENST00000425537 DDX46Q7L014 1031 aaKnown RBP11.32□□□□□ -0.6
HMGB4-201ENST00000425537 VGLL2Q8N8G2 317 aa11.32□□□□□ -0.6
HMGB4-201ENST00000425537 SPRYD3Q8NCJ5 442 aa11.32□□□□□ -0.6
HMGB4-201ENST00000425537 INTS4Q96HW7 963 aaKnown RBP11.32□□□□□ -0.6
HMGB4-201ENST00000425537 FAM227BQ96M60 508 aa11.32□□□□□ -0.6
HMGB4-201ENST00000425537 GBP4Q96PP9 640 aa11.32□□□□□ -0.6
HMGB4-201ENST00000425537 GNL3LQ9NVN8 582 aaKnown RBP11.32□□□□□ -0.6
HMGB4-201ENST00000425537 CARMIL3Q8ND23 1372 aa11.31□□□□□ -0.6
HMGB4-201ENST00000425537 GYS1P13807 737 aa11.31□□□□□ -0.6
HMGB4-201ENST00000425537 FKBP4Q02790 459 aaKnown RBP eCLIP11.31□□□□□ -0.6
HMGB4-201ENST00000425537 TSGA10IPQ3SY00 556 aa11.31□□□□□ -0.6
HMGB4-201ENST00000425537 ERFEQ4G0M1 354 aa11.31□□□□□ -0.6
HMGB4-201ENST00000425537 ZMYM1Q5SVZ6 1142 aa11.31□□□□□ -0.6
HMGB4-201ENST00000425537 TBC1D9BQ66K14 1250 aa11.31□□□□□ -0.6
HMGB4-201ENST00000425537 CREB3L3Q68CJ9 461 aa11.31□□□□□ -0.6
HMGB4-201ENST00000425537 PRPF40BQ6NWY9 871 aaKnown RBP11.31□□□□□ -0.6
HMGB4-201ENST00000425537 CCDC24Q8N4L8 307 aa11.31□□□□□ -0.6
HMGB4-201ENST00000425537 ZSCAN31Q96LW9 406 aaPredicted RBP11.31□□□□□ -0.6
HMGB4-201ENST00000425537 DSCC1Q9BVC3 393 aa11.31□□□□□ -0.6
HMGB4-201ENST00000425537 BCL2L12Q9HB09 334 aa11.31□□□□□ -0.6
HMGB4-201ENST00000425537 BSDC1Q9NW68 430 aaPredicted RBP11.31□□□□□ -0.6
HMGB4-201ENST00000425537 PPP1R1BQ9UD71 204 aaPredicted RBP11.31□□□□□ -0.6
HMGB4-201ENST00000425537 CTNNA3Q9UI47 895 aa11.31□□□□□ -0.6
HMGB4-201ENST00000425537 TAF5LO75529 589 aa11.3□□□□□ -0.6
HMGB4-201ENST00000425537 HMGB1P09429 215 aaKnown RBP11.3□□□□□ -0.6
HMGB4-201ENST00000425537 PDIA4P13667 645 aaKnown RBP11.3□□□□□ -0.6
HMGB4-201ENST00000425537 FGFR2P21802 821 aa11.3□□□□□ -0.6
HMGB4-201ENST00000425537 ARID4AP29374 1257 aaPredicted RBP11.3□□□□□ -0.6
HMGB4-201ENST00000425537 PTGER2P43116 358 aa11.3□□□□□ -0.6
HMGB4-201ENST00000425537 PTH1RQ03431 593 aa11.3□□□□□ -0.6
HMGB4-201ENST00000425537 VPS53Q5VIR6 699 aa11.3□□□□□ -0.6
HMGB4-201ENST00000425537 CHMP4CQ96CF2 233 aa11.3□□□□□ -0.6
HMGB4-201ENST00000425537 ANKRD2Q9GZV1 360 aa11.3□□□□□ -0.6
HMGB4-201ENST00000425537 MTFR1LQ9H019 292 aa11.3□□□□□ -0.6
HMGB4-201ENST00000425537 SPON1Q9HCB6 807 aa11.3□□□□□ -0.6
HMGB4-201ENST00000425537 WWC3Q9ULE0 1092 aa11.3□□□□□ -0.6
HMGB4-201ENST00000425537 PALD1Q9ULE6 856 aa11.3□□□□□ -0.6
HMGB4-201ENST00000425537 DDX11L8A8MPP1 907 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 GOLGA6L22H0YM25 854 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 SLC27A2O14975 620 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 CD2BP2O95400 341 aaKnown RBP11.29□□□□□ -0.6
HMGB4-201ENST00000425537 CASTP20810 708 aaKnown RBP11.29□□□□□ -0.6
HMGB4-201ENST00000425537 ADORA1P30542 326 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 DDIT3P35638 169 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 UBE4AQ14139 1066 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 CCDC102BQ68D86 513 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 BLOC1S2Q6QNY1 142 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 FLAD1Q8NFF5 587 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 APPBP2Q92624 585 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 EDC3Q96F86 508 aaKnown RBP11.29□□□□□ -0.6
HMGB4-201ENST00000425537 JAKMIP1Q96N16 626 aaKnown RBP11.29□□□□□ -0.6
HMGB4-201ENST00000425537 IL25Q9H293 177 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 ALDH8A1Q9H2A2 487 aaPredicted RBP11.29□□□□□ -0.6
HMGB4-201ENST00000425537 ZSWIM6Q9HCJ5 1215 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 SH2B1Q9NRF2 756 aaPredicted RBP11.29□□□□□ -0.6
HMGB4-201ENST00000425537 PDRG1Q9NUG6 133 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 LIMCH1Q9UPQ0 1083 aa11.29□□□□□ -0.6
HMGB4-201ENST00000425537 IGSF3O75054 1194 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 MMP10P09238 476 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 ZAP70P43403 619 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 CHRNDQ07001 517 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 DDR1Q08345 913 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 MAP3K12Q12852 859 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 CUL4AQ13619 759 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 WASHC4Q2M389 1173 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 CAVIN4Q5BKX8 364 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 TMED8Q6PL24 325 aaPredicted RBP11.28□□□□□ -0.6
HMGB4-201ENST00000425537 RUFY3Q7L099 469 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 TMX3Q96JJ7 454 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 SEC31BQ9NQW1 1179 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.28□□□□□ -0.6
HMGB4-201ENST00000425537 MYH7P12883 1935 aa11.28□□□□□ -0.6
HMGB4-201ENST00000425537 SEMA3EO15041 775 aa11.27□□□□□ -0.61
HMGB4-201ENST00000425537 RPS8P62241 208 aaKnown RBP11.27□□□□□ -0.61
HMGB4-201ENST00000425537 ST5P78524 1137 aa11.27□□□□□ -0.61
HMGB4-201ENST00000425537 RAB3GAP1Q15042 981 aa11.27□□□□□ -0.61
HMGB4-201ENST00000425537 UBE3CQ15386 1083 aa11.27□□□□□ -0.61
HMGB4-201ENST00000425537 RASEFQ8IZ41 740 aa11.27□□□□□ -0.61
HMGB4-201ENST00000425537 CNBD1Q8NA66 436 aa11.27□□□□□ -0.61
HMGB4-201ENST00000425537 SGIP1Q9BQI5 828 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms