RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 IQSEC3Q9UPP2 1182 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 GPRASP1Q5JY77 1395 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 TDRD9Q8NDG6 1382 aaKnown RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 VPS41P49754 854 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 TRIM29Q14134 588 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 EPRSP07814 1512 aaKnown RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 DHX29Q7Z478 1369 aaKnown RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 GSDMDP57764 484 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 CUL3Q13618 768 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 PLEKHG2Q9H7P9 1386 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 UPP2O95045 317 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 GJA8P48165 433 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 ATP1A2P50993 1020 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 MRPS25P82663 173 aaKnown RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 PDE1CQ14123 709 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 RASEFQ8IZ41 740 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 WHAMMQ8TF30 809 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 POLD4Q9HCU8 107 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 LSM1O15116 133 aaKnown RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 CC2D1AQ6P1N0 951 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 RASSF8Q8NHQ8 419 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 SLC8A1P32418 973 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 ETF1P62495 437 aaKnown RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 IL17RAQ96F46 866 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 HPDP32754 393 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 RUFY2Q8WXA3 655 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 TSPYL2Q9H2G4 693 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 ZSCAN16Q9H4T2 348 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 SAFB2Q14151 953 aaKnown RBP eCLIP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 SLC40A1Q9NP59 571 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 ZDHHC9Q9Y397 364 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 ERBB3P21860 1342 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 DEUP1Q05D60 604 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 DCTN1Q14203 1278 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 SPTY2D1Q68D10 685 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 NLRP2Q9NX02 1062 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 TROQ12816 1431 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 ABCC11Q96J66 1382 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 CRYMQ14894 314 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 PPFIBP1Q86W92 1011 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 RNF40O75150 1001 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 SASH3O75995 380 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 CAPS2Q9BXY5 557 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 SMIM23A6NLE4 172 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 ATXN8OSP0DMR3 200 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 TBC1D8BQ0IIM8 1120 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 KAT14Q9H8E8 782 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 FILIP1LQ4L180 1135 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 TMEM57Q8N5G2 664 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 TCHPQ9BT92 498 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 AKAP2Q9Y2D5 859 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 DNM1Q05193 864 aaKnown RBP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 YIPF2Q9BWQ6 316 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 UNC45AQ9H3U1 944 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 LZTFL1Q9NQ48 299 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 PDHA1P08559 390 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 RABL2AQ9UBK7 228 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 HSP90AB4PQ58FF6 505 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 MAATS1Q7Z4T9 603 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 LRPPRCP42704 1394 aaKnown RBP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 USP5P45974 858 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 ACCSLQ4AC99 568 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 POLR1AO95602 1720 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 C16orf71Q8IYS4 520 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 KDM5AP29375 1690 aaKnown RBP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 RASSF10A6NK89 507 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 MTA1Q13330 715 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 CAPZA3Q96KX2 299 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 CETN3O15182 167 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 ZNF569Q5MCW4 686 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 KCTD16Q68DU8 428 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 TSR2Q969E8 191 aaKnown RBP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 AOPEPQ8N6M6 819 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC12Q8WUD4 166 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 STAMBPL1Q96FJ0 436 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 FAM170AA1A519 330 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 ARHGAP25P42331 645 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC150Q8NCX0 1101 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 KAT2BQ92831 832 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 ZKSCAN4Q969J2 545 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 OSBPL1AQ9BXW6 950 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 ANO10Q9NW15 660 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 EVC2Q86UK5 1308 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 DNMT1P26358 1616 aaKnown RBP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 C11orf91Q3C1V1 193 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 LONRF3Q496Y0 759 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 SPAG5Q96R06 1193 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 H2AFXP16104 143 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 XBP1P17861 261 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 PTPN21Q16825 1174 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 KBTBD12Q3ZCT8 623 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 SND1Q7KZF4 910 aaKnown RBP eCLIP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 IFT81Q8WYA0 676 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 TAOK3Q9H2K8 898 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 ZBED6P86452 979 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 TSHZ3Q63HK5 1081 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 EZH1Q92800 747 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 ABCA10Q8WWZ4 1543 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC40Q4G0X9 1142 aa3.87□□□□□ -1.79
SYNE1-212ENST00000423061 ZC3H12AQ5D1E8 599 aaKnown RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms