RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 KLHL40Q2TBA0 621 aa17.83■□□□□ 0.45
USP4-203ENST00000415188 NLRP10Q86W26 655 aa17.83■□□□□ 0.45
USP4-203ENST00000415188 RBM17Q96I25 401 aaKnown RBP17.83■□□□□ 0.45
USP4-203ENST00000415188 POTEIP0CG38 1075 aa17.82■□□□□ 0.44
USP4-203ENST00000415188 POTEJP0CG39 1038 aa17.82■□□□□ 0.44
USP4-203ENST00000415188 TCIRG1Q13488 830 aa17.82■□□□□ 0.44
USP4-203ENST00000415188 HSP90AB3PQ58FF7 597 aa17.82■□□□□ 0.44
USP4-203ENST00000415188 SLC10A5Q5PT55 438 aa17.82■□□□□ 0.44
USP4-203ENST00000415188 RIC3Q7Z5B4 369 aa17.82■□□□□ 0.44
USP4-203ENST00000415188 TMX3Q96JJ7 454 aa17.82■□□□□ 0.44
USP4-203ENST00000415188 NLRP3Q96P20 1036 aa17.82■□□□□ 0.44
USP4-203ENST00000415188 CRAMP1Q96RY5 1269 aa17.82■□□□□ 0.44
USP4-203ENST00000415188 METTL22Q9BUU2 404 aaPredicted RBP17.82■□□□□ 0.44
USP4-203ENST00000415188 HIP1O00291 1037 aa17.82■□□□□ 0.44
USP4-203ENST00000415188 PPEF1O14829 653 aaPredicted RBP17.82■□□□□ 0.44
USP4-203ENST00000415188 IFIT2P09913 472 aaKnown RBP17.82■□□□□ 0.44
USP4-203ENST00000415188 HCLS1P14317 486 aaPredicted RBP17.82■□□□□ 0.44
USP4-203ENST00000415188 SUCLG2Q96I99 432 aa17.82■□□□□ 0.44
USP4-203ENST00000415188 PSMD1Q99460 953 aa17.82■□□□□ 0.44
USP4-203ENST00000415188 GZF1Q9H116 711 aaPredicted RBP17.82■□□□□ 0.44
USP4-203ENST00000415188 ANKRD36CQ5JPF3 1778 aa17.81■□□□□ 0.44
USP4-203ENST00000415188 G3BP1Q13283 466 aaKnown RBP eCLIP17.81■□□□□ 0.44
USP4-203ENST00000415188 CWF19L2Q2TBE0 894 aaKnown RBP17.81■□□□□ 0.44
USP4-203ENST00000415188 KIAA1211Q6ZU35 1233 aa17.81■□□□□ 0.44
USP4-203ENST00000415188 TRMT112Q9UI30 125 aaKnown RBP17.81■□□□□ 0.44
USP4-203ENST00000415188 PALD1Q9ULE6 856 aa17.81■□□□□ 0.44
USP4-203ENST00000415188 COL4A5P29400 1685 aa17.8■□□□□ 0.44
USP4-203ENST00000415188 NEURL1BA8MQ27 555 aa17.8■□□□□ 0.44
USP4-203ENST00000415188 CC2D2BQ6DHV5 1058 aa17.8■□□□□ 0.44
USP4-203ENST00000415188 EVI5LQ96CN4 794 aa17.8■□□□□ 0.44
USP4-203ENST00000415188 L3MBTL3Q96JM7 780 aaPredicted RBP17.8■□□□□ 0.44
USP4-203ENST00000415188 LSG1Q9H089 658 aaKnown RBP17.8■□□□□ 0.44
USP4-203ENST00000415188 FZD9O00144 591 aa17.79■□□□□ 0.44
USP4-203ENST00000415188 IGKV5-2P06315 115 aa17.79■□□□□ 0.44
USP4-203ENST00000415188 XRCC6P12956 609 aaKnown RBP eCLIP17.79■□□□□ 0.44
USP4-203ENST00000415188 GCKRQ14397 625 aa17.79■□□□□ 0.44
USP4-203ENST00000415188 ANKRD13DQ6ZTN6 518 aa17.79■□□□□ 0.44
USP4-203ENST00000415188 PLBD2Q8NHP8 589 aa17.79■□□□□ 0.44
USP4-203ENST00000415188 KLRG1Q96E93 195 aa17.79■□□□□ 0.44
USP4-203ENST00000415188 KAZALD1Q96I82 304 aa17.79■□□□□ 0.44
USP4-203ENST00000415188 DIAPH3Q9NSV4 1193 aa17.79■□□□□ 0.44
USP4-203ENST00000415188 FAM43AQ8N2R8 423 aa17.78■□□□□ 0.44
USP4-203ENST00000415188 ZGPATQ8N5A5 531 aaKnown RBP17.78■□□□□ 0.44
USP4-203ENST00000415188 TAF1DQ9H5J8 278 aaPredicted RBP17.78■□□□□ 0.44
USP4-203ENST00000415188 BICC1Q9H694 974 aaKnown RBP17.78■□□□□ 0.44
USP4-203ENST00000415188 SH3TC1Q8TE82 1336 aa17.78■□□□□ 0.44
USP4-203ENST00000415188 IQCA1LA6NCM1 817 aa17.77■□□□□ 0.44
USP4-203ENST00000415188 ATP5J2-PTCD1G3V325 749 aa17.77■□□□□ 0.44
USP4-203ENST00000415188 CHADLQ6NUI6 762 aa17.77■□□□□ 0.44
USP4-203ENST00000415188 ISCA1Q9BUE6 129 aa17.77■□□□□ 0.44
USP4-203ENST00000415188 GRPEL1Q9HAV7 217 aa17.77■□□□□ 0.44
USP4-203ENST00000415188 LAMB2P55268 1798 aa17.76■□□□□ 0.43
USP4-203ENST00000415188 AACSQ86V21 672 aa17.76■□□□□ 0.43
USP4-203ENST00000415188 JDP2Q8WYK2 163 aa17.76■□□□□ 0.43
USP4-203ENST00000415188 KCNB2Q92953 911 aa17.76■□□□□ 0.43
USP4-203ENST00000415188 ATP6V0A2Q9Y487 856 aa17.76■□□□□ 0.43
USP4-203ENST00000415188 DDX49Q9Y6V7 483 aaKnown RBP17.76■□□□□ 0.43
USP4-203ENST00000415188 MCTP1Q6DN14 999 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 LARGE2Q8N3Y3 721 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 COPRSQ9NQ92 184 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 SNRKQ9NRH2 765 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 PA2G4Q9UQ80 394 aaKnown RBP17.75■□□□□ 0.43
USP4-203ENST00000415188 BRD1O95696 1058 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 MAP4K4O95819 1239 aaPredicted RBP17.75■□□□□ 0.43
USP4-203ENST00000415188 GRIPAP1Q4V328 841 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 FAM89AQ96GI7 184 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 MYD88Q99836 296 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 TM6SF1Q9BZW5 370 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 IL25Q9H293 177 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 LMBRD1Q9NUN5 540 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 HACL1Q9UJ83 578 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 SNX14Q9Y5W7 946 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 RFX7Q2KHR2 1363 aa17.75■□□□□ 0.43
USP4-203ENST00000415188 SASH1O94885 1247 aa17.74■□□□□ 0.43
USP4-203ENST00000415188 EAPPQ56P03 285 aaPredicted RBP17.74■□□□□ 0.43
USP4-203ENST00000415188 DDX46Q7L014 1031 aaKnown RBP17.74■□□□□ 0.43
USP4-203ENST00000415188 GPC2Q8N158 579 aa17.74■□□□□ 0.43
USP4-203ENST00000415188 ZDHHC9Q9Y397 364 aa17.74■□□□□ 0.43
USP4-203ENST00000415188 GJA3Q9Y6H8 435 aa17.74■□□□□ 0.43
USP4-203ENST00000415188 SCN4AP35499 1836 aa17.74■□□□□ 0.43
USP4-203ENST00000415188 PPIP5K2O43314 1243 aa17.73■□□□□ 0.43
USP4-203ENST00000415188 BBOX1O75936 387 aa17.73■□□□□ 0.43
USP4-203ENST00000415188 EPHX2P34913 555 aa17.73■□□□□ 0.43
USP4-203ENST00000415188 EIF6P56537 245 aaKnown RBP17.73■□□□□ 0.43
USP4-203ENST00000415188 AOC3Q16853 763 aa17.73■□□□□ 0.43
USP4-203ENST00000415188 RABL6Q3YEC7 729 aaPredicted RBP17.73■□□□□ 0.43
USP4-203ENST00000415188 LDHDQ86WU2 507 aa17.73■□□□□ 0.43
USP4-203ENST00000415188 TTC14Q96N46 770 aa17.73■□□□□ 0.43
USP4-203ENST00000415188 TMX4Q9H1E5 349 aaPredicted RBP17.73■□□□□ 0.43
USP4-203ENST00000415188 ZNF445P59923 1031 aa17.72■□□□□ 0.43
USP4-203ENST00000415188 GRAPQ13588 217 aa17.72■□□□□ 0.43
USP4-203ENST00000415188 CWC27Q6UX04 472 aaKnown RBP17.72■□□□□ 0.43
USP4-203ENST00000415188 SP8Q8IXZ3 490 aa17.72■□□□□ 0.43
USP4-203ENST00000415188 JMYQ8N9B5 988 aa17.72■□□□□ 0.43
USP4-203ENST00000415188 GRAPLQ8TC17 118 aaPredicted RBP17.72■□□□□ 0.43
USP4-203ENST00000415188 DDX60Q8IY21 1712 aaKnown RBP17.72■□□□□ 0.43
USP4-203ENST00000415188 PKP1Q13835 747 aa17.71■□□□□ 0.43
USP4-203ENST00000415188 NIM1KQ8IY84 436 aa17.71■□□□□ 0.43
USP4-203ENST00000415188 EAF2Q96CJ1 260 aaPredicted RBP17.71■□□□□ 0.43
USP4-203ENST00000415188 UPF3BQ9BZI7 483 aaKnown RBP17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms