RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 RNF40O75150 1001 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 ZNF202O95125 648 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 PAFAH1B1P43034 410 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 PIP4K2AP48426 406 aaPredicted RBP10.62□□□□□ -0.71
COL28A1-201ENST00000399429 HAND2P61296 217 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 MUM1L1Q5H9M0 696 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 PI4KAP1Q8N8J0 262 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 SLC24A3Q9HC58 644 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 GOLGA6BA6NDN3 693 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 AKR1B15C9JRZ8 316 aaPredicted RBP10.62□□□□□ -0.71
COL28A1-201ENST00000399429 HMGB1P09429 215 aaKnown RBP10.62□□□□□ -0.71
COL28A1-201ENST00000399429 GCKP35557 465 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 GNGT1P63211 74 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 TUBB4BP68371 445 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 FKBP4Q02790 459 aaKnown RBP eCLIP10.62□□□□□ -0.71
COL28A1-201ENST00000399429 RRP12Q5JTH9 1297 aaKnown RBP10.62□□□□□ -0.71
COL28A1-201ENST00000399429 NAPGQ99747 312 aaPredicted RBP10.62□□□□□ -0.71
COL28A1-201ENST00000399429 VEZTQ9HBM0 779 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 TTC41PQ6P2S7 1318 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 NCBP3Q53F19 620 aaKnown RBP10.61□□□□□ -0.71
COL28A1-201ENST00000399429 EP400NLQ6ZTU2 488 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 WAPLQ7Z5K2 1190 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 OSBPL3Q9H4L5 887 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 ABCB6Q9NP58 842 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 CPSF2Q9P2I0 782 aaKnown RBP10.61□□□□□ -0.71
COL28A1-201ENST00000399429 MYO6Q9UM54 1294 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 SUFUQ9UMX1 484 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 KDM5DQ9BY66 1539 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 IMMTQ16891 758 aaKnown RBP10.61□□□□□ -0.71
COL28A1-201ENST00000399429 CEP85LQ5SZL2 805 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 E4F1Q66K89 784 aaPredicted RBP10.61□□□□□ -0.71
COL28A1-201ENST00000399429 RSRC1Q96IZ7 334 aaKnown RBP10.61□□□□□ -0.71
COL28A1-201ENST00000399429 PPFIA4O75335 1185 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 NLRP12P59046 1061 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 SPA17Q15506 151 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 C1orf141Q5JVX7 400 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 SRGAP1Q7Z6B7 1085 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 ZRANB1Q9UGI0 708 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 AFMP43652 599 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 CCZ1BP86790 482 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 CCZ1P86791 482 aaPredicted RBP10.61□□□□□ -0.71
COL28A1-201ENST00000399429 SF3A3Q12874 501 aaKnown RBP eCLIP10.61□□□□□ -0.71
COL28A1-201ENST00000399429 MSL1Q68DK7 614 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 DDX46Q7L014 1031 aaKnown RBP10.61□□□□□ -0.71
COL28A1-201ENST00000399429 N4BP2L2Q92802 583 aaPredicted RBP10.61□□□□□ -0.71
COL28A1-201ENST00000399429 ZSWIM6Q9HCJ5 1215 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 MED4Q9NPJ6 270 aa10.61□□□□□ -0.71
COL28A1-201ENST00000399429 PTPRTO14522 1441 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 ZMYND10O75800 440 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 RPSAP08865 295 aaKnown RBP10.6□□□□□ -0.71
COL28A1-201ENST00000399429 CKAP4Q07065 602 aaKnown RBP10.6□□□□□ -0.71
COL28A1-201ENST00000399429 CASP8Q14790 479 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 ANKRD18AQ8IVF6 992 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 IGSF22Q8N9C0 903 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 CCDC47Q96A33 483 aaKnown RBP10.6□□□□□ -0.71
COL28A1-201ENST00000399429 LSG1Q9H089 658 aaKnown RBP10.6□□□□□ -0.71
COL28A1-201ENST00000399429 YY1AP1Q9H869 796 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 CCDC196A0A1B0GTZ2 297 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 ERICH2A1L162 156 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 ATP1A3P13637 1013 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 HPDP32754 393 aaPredicted RBP10.6□□□□□ -0.71
COL28A1-201ENST00000399429 ATP1A2P50993 1020 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 NYAP1Q6ZVC0 841 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 FMNL3Q8IVF7 1028 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 ODF2LQ9ULJ1 636 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 NFE2L3Q9Y4A8 694 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 CTTNBP2Q8WZ74 1663 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 TADA3O75528 432 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 H2AFXP16104 143 aaPredicted RBP10.6□□□□□ -0.71
COL28A1-201ENST00000399429 SARM1Q6SZW1 724 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 TRMT44Q8IYL2 757 aaKnown RBP10.6□□□□□ -0.71
COL28A1-201ENST00000399429 LRRN4CLQ8ND94 238 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 PGBD1Q96JS3 809 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 CCDC113Q9H0I3 377 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 FANCLQ9NW38 375 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 ZNF446Q9NWS9 450 aa10.6□□□□□ -0.71
COL28A1-201ENST00000399429 SSH2Q76I76 1423 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 SSR1P43307 286 aaKnown RBP10.59□□□□□ -0.71
COL28A1-201ENST00000399429 E2F5Q15329 346 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 SPECC1Q5M775 1068 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 SND1Q7KZF4 910 aaKnown RBP eCLIP10.59□□□□□ -0.71
COL28A1-201ENST00000399429 CAPS2Q9BXY5 557 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 SYNJ2O15056 1496 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 ERCC6Q03468 1493 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 A0A1W2PP64 1363 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 ECM2O94769 699 aaPredicted RBP10.59□□□□□ -0.71
COL28A1-201ENST00000399429 NDUFA8P51970 172 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 MEX3CQ5U5Q3 659 aaKnown RBP10.59□□□□□ -0.71
COL28A1-201ENST00000399429 CABS1Q96KC9 395 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 TM6SF1Q9BZW5 370 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 FAM135BQ49AJ0 1406 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 ADGRL2O95490 1459 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 FOXO3O43524 673 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 CDKL5O76039 1030 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 KIF4AO95239 1232 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 ARHGAP25P42331 645 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 SPECC1LQ69YQ0 1117 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 TRIM22Q8IYM9 498 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 KLHL34Q8N239 644 aa10.59□□□□□ -0.71
COL28A1-201ENST00000399429 IFT81Q8WYA0 676 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms