RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 ARHGEF6Q15052 776 aa12.37□□□□□ -0.43
NEDD9-203ENST00000397378 LDLRAD1Q5T700 205 aa12.37□□□□□ -0.43
NEDD9-203ENST00000397378 SH3TC2Q8TF17 1288 aa12.37□□□□□ -0.43
NEDD9-203ENST00000397378 WNK4Q96J92 1243 aa12.37□□□□□ -0.43
NEDD9-203ENST00000397378 HTATIP2Q9BUP3 242 aa12.37□□□□□ -0.43
NEDD9-203ENST00000397378 COL4A1P02462 1669 aa12.36□□□□□ -0.43
NEDD9-203ENST00000397378 EIF2S2P20042 333 aaKnown RBP12.36□□□□□ -0.43
NEDD9-203ENST00000397378 PROSER3Q2NL68 480 aa12.36□□□□□ -0.43
NEDD9-203ENST00000397378 GMLQ99445 158 aa12.36□□□□□ -0.43
NEDD9-203ENST00000397378 PNNQ9H307 717 aaKnown RBP12.36□□□□□ -0.43
NEDD9-203ENST00000397378 BABAM1Q9NWV8 329 aa12.36□□□□□ -0.43
NEDD9-203ENST00000397378 TSPYL4Q9UJ04 414 aa12.36□□□□□ -0.43
NEDD9-203ENST00000397378 NR2E3Q9Y5X4 410 aa12.36□□□□□ -0.43
NEDD9-203ENST00000397378 LAMA3Q16787 3333 aa12.36□□□□□ -0.43
NEDD9-203ENST00000397378 A0A1W2PPC1 479 aa12.35□□□□□ -0.43
NEDD9-203ENST00000397378 WNT10BO00744 389 aa12.35□□□□□ -0.43
NEDD9-203ENST00000397378 ANXA1P04083 346 aa12.35□□□□□ -0.43
NEDD9-203ENST00000397378 COPS6Q7L5N1 327 aa12.35□□□□□ -0.43
NEDD9-203ENST00000397378 OGFOD1Q8N543 542 aa12.35□□□□□ -0.43
NEDD9-203ENST00000397378 CLMNQ96JQ2 1002 aa12.35□□□□□ -0.43
NEDD9-203ENST00000397378 ANKIB1Q9P2G1 1089 aa12.35□□□□□ -0.43
NEDD9-203ENST00000397378 USP17L3A6NCW0 530 aa12.34□□□□□ -0.43
NEDD9-203ENST00000397378 USP17L4A6NCW7 530 aa12.34□□□□□ -0.43
NEDD9-203ENST00000397378 SASH1O94885 1247 aa12.34□□□□□ -0.43
NEDD9-203ENST00000397378 ANKRD13DQ6ZTN6 518 aa12.34□□□□□ -0.43
NEDD9-203ENST00000397378 USP17L1Q7RTZ2 530 aa12.34□□□□□ -0.43
NEDD9-203ENST00000397378 APOBEC3FQ8IUX4 373 aaKnown RBP12.34□□□□□ -0.43
NEDD9-203ENST00000397378 SHISA4Q96DD7 197 aa12.34□□□□□ -0.43
NEDD9-203ENST00000397378 GGA1Q9UJY5 639 aa12.34□□□□□ -0.43
NEDD9-203ENST00000397378 MAPK8IP3Q9UPT6 1336 aa12.34□□□□□ -0.43
NEDD9-203ENST00000397378 AIMP1Q12904 312 aaKnown RBP12.33□□□□□ -0.44
NEDD9-203ENST00000397378 SF3B3Q15393 1217 aaKnown RBP12.33□□□□□ -0.44
NEDD9-203ENST00000397378 DEFB123Q8N688 67 aa12.33□□□□□ -0.44
NEDD9-203ENST00000397378 XAGE3Q8WTP9 111 aa12.33□□□□□ -0.44
NEDD9-203ENST00000397378 FBXW7Q969H0 707 aa12.33□□□□□ -0.44
NEDD9-203ENST00000397378 STXBP5LQ9Y2K9 1186 aa12.33□□□□□ -0.44
NEDD9-203ENST00000397378 ZNF646O15015 1829 aaPredicted RBP12.32□□□□□ -0.44
NEDD9-203ENST00000397378 ZBTB7BO15156 539 aaPredicted RBP12.32□□□□□ -0.44
NEDD9-203ENST00000397378 RPS8P62241 208 aaKnown RBP12.32□□□□□ -0.44
NEDD9-203ENST00000397378 Q7L0L9 218 aa12.32□□□□□ -0.44
NEDD9-203ENST00000397378 PODXL2Q9NZ53 605 aa12.32□□□□□ -0.44
NEDD9-203ENST00000397378 ZSWIM8A7E2V4 1837 aa12.32□□□□□ -0.44
NEDD9-203ENST00000397378 PPP1R12BO60237 982 aaPredicted RBP12.31□□□□□ -0.44
NEDD9-203ENST00000397378 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.31□□□□□ -0.44
NEDD9-203ENST00000397378 NKX2-3Q8TAU0 364 aa12.31□□□□□ -0.44
NEDD9-203ENST00000397378 PTPN18Q99952 460 aa12.31□□□□□ -0.44
NEDD9-203ENST00000397378 MXD3Q9BW11 206 aa12.31□□□□□ -0.44
NEDD9-203ENST00000397378 COL1A1P02452 1464 aaPredicted RBP12.3□□□□□ -0.44
NEDD9-203ENST00000397378 KIF22Q14807 665 aa12.3□□□□□ -0.44
NEDD9-203ENST00000397378 MTFR1Q15390 333 aa12.3□□□□□ -0.44
NEDD9-203ENST00000397378 TAF1CQ15572 869 aaPredicted RBP12.3□□□□□ -0.44
NEDD9-203ENST00000397378 MAP3K11Q16584 847 aa12.3□□□□□ -0.44
NEDD9-203ENST00000397378 RTL5Q5HYW3 569 aaPredicted RBP12.3□□□□□ -0.44
NEDD9-203ENST00000397378 PODNQ7Z5L7 613 aa12.3□□□□□ -0.44
NEDD9-203ENST00000397378 PLBD2Q8NHP8 589 aa12.3□□□□□ -0.44
NEDD9-203ENST00000397378 FAM89AQ96GI7 184 aa12.3□□□□□ -0.44
NEDD9-203ENST00000397378 ISCA1Q9BUE6 129 aa12.3□□□□□ -0.44
NEDD9-203ENST00000397378 ZFYVE28Q9HCC9 887 aa12.3□□□□□ -0.44
NEDD9-203ENST00000397378 STAP2Q9UGK3 403 aa12.3□□□□□ -0.44
NEDD9-203ENST00000397378 EVI5O60447 810 aa12.29□□□□□ -0.44
NEDD9-203ENST00000397378 GJA5P36382 358 aa12.29□□□□□ -0.44
NEDD9-203ENST00000397378 RIPK4P57078 832 aa12.29□□□□□ -0.44
NEDD9-203ENST00000397378 GPR153Q6NV75 609 aa12.29□□□□□ -0.44
NEDD9-203ENST00000397378 MYO3BQ8WXR4 1341 aa12.29□□□□□ -0.44
NEDD9-203ENST00000397378 SSC5DA1L4H1 1573 aa12.28□□□□□ -0.44
NEDD9-203ENST00000397378 TESPA1A2RU30 521 aaPredicted RBP12.28□□□□□ -0.44
NEDD9-203ENST00000397378 ECM2O94769 699 aaPredicted RBP12.28□□□□□ -0.44
NEDD9-203ENST00000397378 LMOD3Q0VAK6 560 aa12.28□□□□□ -0.44
NEDD9-203ENST00000397378 DACT2Q5SW24 774 aa12.28□□□□□ -0.44
NEDD9-203ENST00000397378 ARHGAP39Q9C0H5 1083 aa12.28□□□□□ -0.44
NEDD9-203ENST00000397378 DEFB129Q9H1M3 183 aa12.28□□□□□ -0.44
NEDD9-203ENST00000397378 PRDM6Q9NQX0 595 aa12.28□□□□□ -0.44
NEDD9-203ENST00000397378 TMPOP42166 694 aaKnown RBP12.27□□□□□ -0.45
NEDD9-203ENST00000397378 GJA8P48165 433 aa12.27□□□□□ -0.45
NEDD9-203ENST00000397378 IREB2P48200 963 aaKnown RBP12.27□□□□□ -0.45
NEDD9-203ENST00000397378 TRIM28Q13263 835 aaKnown RBP12.27□□□□□ -0.45
NEDD9-203ENST00000397378 UBE2Q1Q7Z7E8 422 aa12.27□□□□□ -0.45
NEDD9-203ENST00000397378 SEC31BQ9NQW1 1179 aa12.27□□□□□ -0.45
NEDD9-203ENST00000397378 CHPF2Q9P2E5 772 aa12.27□□□□□ -0.45
NEDD9-203ENST00000397378 UNCXA6NJT0 531 aa12.26□□□□□ -0.45
NEDD9-203ENST00000397378 CHL1O00533 1208 aa12.26□□□□□ -0.45
NEDD9-203ENST00000397378 IRS4O14654 1257 aaPredicted RBP12.26□□□□□ -0.45
NEDD9-203ENST00000397378 WDHD1O75717 1129 aaPredicted RBP12.26□□□□□ -0.45
NEDD9-203ENST00000397378 FARP2O94887 1054 aaPredicted RBP12.26□□□□□ -0.45
NEDD9-203ENST00000397378 HOXB7P09629 217 aa12.26□□□□□ -0.45
NEDD9-203ENST00000397378 ATP2B4P23634 1241 aa12.26□□□□□ -0.45
NEDD9-203ENST00000397378 KIAA0825Q8IV33 1275 aa12.26□□□□□ -0.45
NEDD9-203ENST00000397378 ANKRD13AQ8IZ07 590 aa12.26□□□□□ -0.45
NEDD9-203ENST00000397378 OPTNQ96CV9 577 aa12.26□□□□□ -0.45
NEDD9-203ENST00000397378 ELP3Q9H9T3 547 aa12.26□□□□□ -0.45
NEDD9-203ENST00000397378 MTMR10Q9NXD2 777 aa12.26□□□□□ -0.45
NEDD9-203ENST00000397378 OTOFQ9HC10 1997 aa12.26□□□□□ -0.45
NEDD9-203ENST00000397378 XDHP47989 1333 aa12.26□□□□□ -0.45
NEDD9-203ENST00000397378 VCANP13611 3396 aa12.26□□□□□ -0.45
NEDD9-203ENST00000397378 MYH3P11055 1940 aa12.25□□□□□ -0.45
NEDD9-203ENST00000397378 CCL15-CCL14A0A0B4J2E2 113 aa12.25□□□□□ -0.45
NEDD9-203ENST00000397378 ATP5J2-PTCD1G3V325 749 aa12.25□□□□□ -0.45
NEDD9-203ENST00000397378 GJB1P08034 283 aa12.25□□□□□ -0.45
NEDD9-203ENST00000397378 CCL5P13501 91 aa12.25□□□□□ -0.45
NEDD9-203ENST00000397378 PRMT2P55345 433 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms