RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 MAST3O60307 1309 aa24.23■■□□□ 1.47
CLK3-202ENST00000395066 H7C1W4 665 aa24.23■■□□□ 1.47
CLK3-202ENST00000395066 M0R2C6 588 aa24.23■■□□□ 1.47
CLK3-202ENST00000395066 CCAR1Q8IX12 1150 aaKnown RBP24.23■■□□□ 1.47
CLK3-202ENST00000395066 RAB11FIP4Q86YS3 637 aa24.22■■□□□ 1.47
CLK3-202ENST00000395066 ZNF330Q9Y3S2 320 aaPredicted RBP24.22■■□□□ 1.47
CLK3-202ENST00000395066 IFIT1P09914 478 aaKnown RBP24.22■■□□□ 1.47
CLK3-202ENST00000395066 HAND2P61296 217 aa24.22■■□□□ 1.47
CLK3-202ENST00000395066 CCDC144BQ3MJ40 725 aa24.22■■□□□ 1.47
CLK3-202ENST00000395066 OTUD7BQ6GQQ9 843 aa24.22■■□□□ 1.47
CLK3-202ENST00000395066 PLA2G4DQ86XP0 818 aa24.22■■□□□ 1.47
CLK3-202ENST00000395066 CCDC144CPQ8IYA2 1237 aa24.22■■□□□ 1.47
CLK3-202ENST00000395066 ZSCAN16Q9H4T2 348 aaPredicted RBP24.22■■□□□ 1.47
CLK3-202ENST00000395066 CWC25Q9NXE8 425 aaPredicted RBP24.22■■□□□ 1.47
CLK3-202ENST00000395066 RFX7Q2KHR2 1363 aa24.21■■□□□ 1.47
CLK3-202ENST00000395066 A0A1B0GUL7 405 aa24.21■■□□□ 1.47
CLK3-202ENST00000395066 CTIFO43310 598 aaKnown RBP24.21■■□□□ 1.47
CLK3-202ENST00000395066 ATF3P18847 181 aa24.21■■□□□ 1.47
CLK3-202ENST00000395066 FKBP4Q02790 459 aaKnown RBP eCLIP24.21■■□□□ 1.47
CLK3-202ENST00000395066 ZMYM1Q5SVZ6 1142 aa24.21■■□□□ 1.47
CLK3-202ENST00000395066 TDRD7Q8NHU6 1098 aaKnown RBP24.21■■□□□ 1.47
CLK3-202ENST00000395066 ANKRD7Q92527 254 aa24.21■■□□□ 1.47
CLK3-202ENST00000395066 CFAP45Q9UL16 551 aa24.21■■□□□ 1.47
CLK3-202ENST00000395066 EXOSC10Q01780 885 aaKnown RBP24.21■■□□□ 1.47
CLK3-202ENST00000395066 PALLDQ8WX93 1383 aa24.2■■□□□ 1.47
CLK3-202ENST00000395066 C16orf45Q96MC5 204 aaPredicted RBP24.2■■□□□ 1.47
CLK3-202ENST00000395066 GLI3P10071 1580 aa24.2■■□□□ 1.46
CLK3-202ENST00000395066 ARID5BQ14865 1188 aa24.2■■□□□ 1.46
CLK3-202ENST00000395066 ILDR1Q86SU0 546 aaPredicted RBP24.2■■□□□ 1.46
CLK3-202ENST00000395066 BCL11BQ9C0K0 894 aaPredicted RBP24.2■■□□□ 1.46
CLK3-202ENST00000395066 HELLSQ9NRZ9 838 aa24.19■■□□□ 1.46
CLK3-202ENST00000395066 ZHX1Q9UKY1 873 aaPredicted RBP24.19■■□□□ 1.46
CLK3-202ENST00000395066 COL18A1P39060 1754 aa24.19■■□□□ 1.46
CLK3-202ENST00000395066 PDIA3P30101 505 aaKnown RBP24.19■■□□□ 1.46
CLK3-202ENST00000395066 ZSCAN25Q6NSZ9 544 aa24.19■■□□□ 1.46
CLK3-202ENST00000395066 OSBP2Q969R2 916 aa24.19■■□□□ 1.46
CLK3-202ENST00000395066 CLIP2Q9UDT6 1046 aa24.19■■□□□ 1.46
CLK3-202ENST00000395066 TAOK2Q9UL54 1235 aa24.19■■□□□ 1.46
CLK3-202ENST00000395066 ADORA1P30542 326 aa24.18■■□□□ 1.46
CLK3-202ENST00000395066 DSCC1Q9BVC3 393 aa24.18■■□□□ 1.46
CLK3-202ENST00000395066 EYA2O00167 538 aa24.18■■□□□ 1.46
CLK3-202ENST00000395066 CACTINQ8WUQ7 758 aaKnown RBP24.18■■□□□ 1.46
CLK3-202ENST00000395066 KIF1AQ12756 1690 aa24.18■■□□□ 1.46
CLK3-202ENST00000395066 HMGB1P09429 215 aaKnown RBP24.17■■□□□ 1.46
CLK3-202ENST00000395066 IL15P40933 162 aaPredicted RBP24.17■■□□□ 1.46
CLK3-202ENST00000395066 SNW1Q13573 536 aaKnown RBP24.17■■□□□ 1.46
CLK3-202ENST00000395066 LLPHQ9BRT6 129 aaKnown RBP24.17■■□□□ 1.46
CLK3-202ENST00000395066 GJB4Q9NTQ9 266 aa24.17■■□□□ 1.46
CLK3-202ENST00000395066 RNF113AO15541 343 aaKnown RBP24.17■■□□□ 1.46
CLK3-202ENST00000395066 ME1P48163 572 aa24.17■■□□□ 1.46
CLK3-202ENST00000395066 IQCB1Q15051 598 aa24.16■■□□□ 1.46
CLK3-202ENST00000395066 NAA16Q6N069 864 aaPredicted RBP24.16■■□□□ 1.46
CLK3-202ENST00000395066 RCOR1Q9UKL0 485 aa24.16■■□□□ 1.46
CLK3-202ENST00000395066 MST1RQ04912 1400 aa24.16■■□□□ 1.46
CLK3-202ENST00000395066 PI16Q6UXB8 463 aa24.16■■□□□ 1.46
CLK3-202ENST00000395066 FDPSP14324 419 aaKnown RBP24.15■■□□□ 1.46
CLK3-202ENST00000395066 SCARF1Q14162 830 aa24.15■■□□□ 1.46
CLK3-202ENST00000395066 GTPBP4Q9BZE4 634 aaKnown RBP24.15■■□□□ 1.46
CLK3-202ENST00000395066 TMEM94Q12767 1356 aa24.15■■□□□ 1.46
CLK3-202ENST00000395066 SALL1Q9NSC2 1324 aa24.15■■□□□ 1.46
CLK3-202ENST00000395066 WASHC4Q2M389 1173 aa24.15■■□□□ 1.46
CLK3-202ENST00000395066 SPDYE4A6NLX3 237 aa24.14■■□□□ 1.46
CLK3-202ENST00000395066 FSIP1Q8NA03 581 aa24.14■■□□□ 1.46
CLK3-202ENST00000395066 AGXT2Q9BYV1 514 aa24.14■■□□□ 1.46
CLK3-202ENST00000395066 GOLGA6L19H0YKK7 550 aa24.14■■□□□ 1.45
CLK3-202ENST00000395066 FOXP2O15409 715 aa24.14■■□□□ 1.45
CLK3-202ENST00000395066 ARHGAP30Q7Z6I6 1101 aaPredicted RBP24.14■■□□□ 1.45
CLK3-202ENST00000395066 CARMIL3Q8ND23 1372 aa24.14■■□□□ 1.45
CLK3-202ENST00000395066 CCDC73Q6ZRK6 1079 aa24.14■■□□□ 1.45
CLK3-202ENST00000395066 POLR3DP05423 398 aaPredicted RBP24.13■■□□□ 1.45
CLK3-202ENST00000395066 U2AF2P26368 475 aaKnown RBP eCLIP24.13■■□□□ 1.453e-6■■□□□ 13
CLK3-202ENST00000395066 TJP1Q07157 1748 aa24.13■■□□□ 1.45
CLK3-202ENST00000395066 MYH15Q9Y2K3 1946 aa24.12■■□□□ 1.45
CLK3-202ENST00000395066 ADAMTSL3P82987 1691 aa24.12■■□□□ 1.45
CLK3-202ENST00000395066 A0A1B0GVL5 298 aa24.12■■□□□ 1.45
CLK3-202ENST00000395066 GORABQ5T7V8 394 aa24.12■■□□□ 1.45
CLK3-202ENST00000395066 KINO60870 393 aaKnown RBP24.12■■□□□ 1.45
CLK3-202ENST00000395066 TOM1L2Q6ZVM7 507 aa24.12■■□□□ 1.45
CLK3-202ENST00000395066 ENGASEQ8NFI3 743 aa24.12■■□□□ 1.45
CLK3-202ENST00000395066 STX1AQ16623 288 aa24.11■■□□□ 1.45
CLK3-202ENST00000395066 SYNE4Q8N205 404 aa24.11■■□□□ 1.45
CLK3-202ENST00000395066 PCDHA7Q9UN72 937 aa24.11■■□□□ 1.45
CLK3-202ENST00000395066 PKD1L3Q7Z443 1732 aa24.11■■□□□ 1.45
CLK3-202ENST00000395066 SMTNL1A8MU46 457 aa24.11■■□□□ 1.45
CLK3-202ENST00000395066 NCBP1Q09161 790 aaKnown RBP24.11■■□□□ 1.45
CLK3-202ENST00000395066 GPR108Q9NPR9 543 aa24.11■■□□□ 1.45
CLK3-202ENST00000395066 CEP126Q9P2H0 1117 aa24.11■■□□□ 1.45
CLK3-202ENST00000395066 DENND2AQ9ULE3 1009 aa24.11■■□□□ 1.45
CLK3-202ENST00000395066 LAMB4A4D0S4 1761 aa24.11■■□□□ 1.45
CLK3-202ENST00000395066 ZCRB1Q8TBF4 217 aaKnown RBP24.1■■□□□ 1.45
CLK3-202ENST00000395066 FAM89AQ96GI7 184 aa24.1■■□□□ 1.45
CLK3-202ENST00000395066 XAGE2Q96GT9 111 aa24.1■■□□□ 1.45
CLK3-202ENST00000395066 CLIC4Q9Y696 253 aa24.1■■□□□ 1.45
CLK3-202ENST00000395066 USP27XA6NNY8 438 aa24.1■■□□□ 1.45
CLK3-202ENST00000395066 TTC39AQ5SRH9 613 aa24.1■■□□□ 1.45
CLK3-202ENST00000395066 FILIP1Q7Z7B0 1213 aa24.1■■□□□ 1.45
CLK3-202ENST00000395066 DHX40Q8IX18 779 aaKnown RBP24.1■■□□□ 1.45
CLK3-202ENST00000395066 CCDC191Q8NCU4 936 aa24.1■■□□□ 1.45
CLK3-202ENST00000395066 PUS7LQ9H0K6 701 aaKnown RBP24.1■■□□□ 1.45
CLK3-202ENST00000395066 BECN2A8MW95 431 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms