RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 C11orf57Q6ZUT1 292 aaPredicted RBP18.72■□□□□ 0.59
PCDH1-203ENST00000394536 ZSWIM4Q9H7M6 989 aa18.72■□□□□ 0.59
PCDH1-203ENST00000394536 IGKV5-2P06315 115 aa18.71■□□□□ 0.59
PCDH1-203ENST00000394536 IL15P40933 162 aaPredicted RBP18.71■□□□□ 0.59
PCDH1-203ENST00000394536 NCOA7Q8NI08 942 aa18.71■□□□□ 0.59
PCDH1-203ENST00000394536 PGBD1Q96JS3 809 aa18.71■□□□□ 0.59
PCDH1-203ENST00000394536 TSPOAP1O95153 1857 aa18.71■□□□□ 0.59
PCDH1-203ENST00000394536 RNF113AO15541 343 aaKnown RBP18.71■□□□□ 0.59
PCDH1-203ENST00000394536 UBASH3AP57075 661 aa18.71■□□□□ 0.59
PCDH1-203ENST00000394536 ALG1Q9BT22 464 aa18.71■□□□□ 0.59
PCDH1-203ENST00000394536 MAPK8IP2Q13387 824 aaPredicted RBP18.7■□□□□ 0.58
PCDH1-203ENST00000394536 SLC52A2Q9HAB3 445 aa18.7■□□□□ 0.58
PCDH1-203ENST00000394536 AKAP2Q9Y2D5 859 aa18.7■□□□□ 0.58
PCDH1-203ENST00000394536 VIRMAQ69YN4 1812 aaKnown RBP18.7■□□□□ 0.58
PCDH1-203ENST00000394536 E7EWF7 191 aa18.7■□□□□ 0.58
PCDH1-203ENST00000394536 METAP2P50579 478 aaKnown RBP eCLIP18.7■□□□□ 0.58
PCDH1-203ENST00000394536 TRIM22Q8IYM9 498 aa18.7■□□□□ 0.58
PCDH1-203ENST00000394536 KCNF1Q9H3M0 494 aa18.7■□□□□ 0.58
PCDH1-203ENST00000394536 GPHNQ9NQX3 736 aaPredicted RBP18.7■□□□□ 0.58
PCDH1-203ENST00000394536 ADCY9O60503 1353 aa18.7■□□□□ 0.58
PCDH1-203ENST00000394536 TPM1P09493 284 aa18.7■□□□□ 0.58
PCDH1-203ENST00000394536 TDO2P48775 406 aa18.7■□□□□ 0.58
PCDH1-203ENST00000394536 TEX35Q5T0J7 233 aa18.7■□□□□ 0.58
PCDH1-203ENST00000394536 SART3Q15020 963 aaKnown RBP18.69■□□□□ 0.58
PCDH1-203ENST00000394536 KCNG4Q8TDN1 519 aa18.69■□□□□ 0.58
PCDH1-203ENST00000394536 IFIT3O14879 490 aaKnown RBP18.69■□□□□ 0.58
PCDH1-203ENST00000394536 AP5Z1O43299 807 aa18.69■□□□□ 0.58
PCDH1-203ENST00000394536 CDKL5O76039 1030 aa18.69■□□□□ 0.58
PCDH1-203ENST00000394536 SLC9C2Q5TAH2 1124 aa18.69■□□□□ 0.58
PCDH1-203ENST00000394536 FAM89AQ96GI7 184 aa18.69■□□□□ 0.58
PCDH1-203ENST00000394536 IARSP41252 1262 aaKnown RBP18.69■□□□□ 0.58
PCDH1-203ENST00000394536 VPS37DQ86XT2 251 aa18.69■□□□□ 0.58
PCDH1-203ENST00000394536 SLC26A6Q9BXS9 759 aa18.69■□□□□ 0.58
PCDH1-203ENST00000394536 ZNF215Q9UL58 517 aaPredicted RBP18.69■□□□□ 0.58
PCDH1-203ENST00000394536 TNNT3P45378 269 aaPredicted RBP18.68■□□□□ 0.58
PCDH1-203ENST00000394536 ELF2Q15723 593 aa18.68■□□□□ 0.58
PCDH1-203ENST00000394536 PTPN21Q16825 1174 aa18.68■□□□□ 0.58
PCDH1-203ENST00000394536 HELBQ8NG08 1087 aaPredicted RBP18.68■□□□□ 0.58
PCDH1-203ENST00000394536 OVOS2A0A0J9YW53 1432 aa18.68■□□□□ 0.58
PCDH1-203ENST00000394536 OVOS2Q6IE36 1432 aa18.68■□□□□ 0.58
PCDH1-203ENST00000394536 LRRC24Q50LG9 513 aa18.68■□□□□ 0.58
PCDH1-203ENST00000394536 GJB4Q9NTQ9 266 aa18.68■□□□□ 0.58
PCDH1-203ENST00000394536 GOLGA8AA7E2F4 631 aa18.68■□□□□ 0.58
PCDH1-203ENST00000394536 CBFA2T2O43439 604 aa18.68■□□□□ 0.58
PCDH1-203ENST00000394536 SLU7O95391 586 aaKnown RBP18.68■□□□□ 0.58
PCDH1-203ENST00000394536 SPECC1Q5M775 1068 aa18.68■□□□□ 0.58
PCDH1-203ENST00000394536 NAPBQ9H115 298 aa18.68■□□□□ 0.58
PCDH1-203ENST00000394536 ABCF2Q9UG63 623 aa18.68■□□□□ 0.58
PCDH1-203ENST00000394536 USP31Q70CQ4 1352 aa18.68■□□□□ 0.58
PCDH1-203ENST00000394536 ELP1O95163 1332 aa18.67■□□□□ 0.58
PCDH1-203ENST00000394536 MINDY4BA8MYZ0 360 aa18.67■□□□□ 0.58
PCDH1-203ENST00000394536 KIF2AO00139 706 aaPredicted RBP18.67■□□□□ 0.58
PCDH1-203ENST00000394536 COL9A3Q14050 684 aaPredicted RBP18.67■□□□□ 0.58
PCDH1-203ENST00000394536 PTPN12Q05209 780 aaKnown RBP18.67■□□□□ 0.58
PCDH1-203ENST00000394536 MTX1Q13505 466 aa18.67■□□□□ 0.58
PCDH1-203ENST00000394536 TMCO3Q6UWJ1 677 aa18.67■□□□□ 0.58
PCDH1-203ENST00000394536 TTLL7Q6ZT98 887 aa18.67■□□□□ 0.58
PCDH1-203ENST00000394536 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.67■□□□□ 0.58
PCDH1-203ENST00000394536 LRRC8AQ8IWT6 810 aa18.67■□□□□ 0.58
PCDH1-203ENST00000394536 PLEKHG1Q9ULL1 1385 aa18.67■□□□□ 0.58
PCDH1-203ENST00000394536 HSPD1P10809 573 aaKnown RBP18.67■□□□□ 0.58
PCDH1-203ENST00000394536 SKIDA1Q1XH10 827 aa18.67■□□□□ 0.58
PCDH1-203ENST00000394536 TMEM67Q5HYA8 995 aa18.67■□□□□ 0.58
PCDH1-203ENST00000394536 ATP2B3Q16720 1220 aa18.66■□□□□ 0.58
PCDH1-203ENST00000394536 MPHOSPH8Q99549 860 aa18.66■□□□□ 0.58
PCDH1-203ENST00000394536 SLC12A7Q9Y666 1083 aa18.66■□□□□ 0.58
PCDH1-203ENST00000394536 EYA2O00167 538 aa18.66■□□□□ 0.58
PCDH1-203ENST00000394536 NSUN7Q8NE18 718 aaKnown RBP18.66■□□□□ 0.58
PCDH1-203ENST00000394536 XPO4Q9C0E2 1151 aaKnown RBP18.66■□□□□ 0.58
PCDH1-203ENST00000394536 COPRSQ9NQ92 184 aa18.66■□□□□ 0.58
PCDH1-203ENST00000394536 PCDHA7Q9UN72 937 aa18.66■□□□□ 0.58
PCDH1-203ENST00000394536 AXIN2Q9Y2T1 843 aa18.66■□□□□ 0.58
PCDH1-203ENST00000394536 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.66■□□□□ 0.58
PCDH1-203ENST00000394536 TDRD7Q8NHU6 1098 aaKnown RBP18.66■□□□□ 0.58
PCDH1-203ENST00000394536 MYL10Q9BUA6 226 aa18.66■□□□□ 0.58
PCDH1-203ENST00000394536 CCP110O43303 1012 aa18.65■□□□□ 0.58
PCDH1-203ENST00000394536 GNG11P61952 73 aa18.65■□□□□ 0.58
PCDH1-203ENST00000394536 CCDC144BQ3MJ40 725 aa18.65■□□□□ 0.58
PCDH1-203ENST00000394536 CCDC102BQ68D86 513 aa18.65■□□□□ 0.58
PCDH1-203ENST00000394536 KRT222Q8N1A0 295 aa18.65■□□□□ 0.58
PCDH1-203ENST00000394536 PHKBQ93100 1093 aa18.65■□□□□ 0.58
PCDH1-203ENST00000394536 LLPHQ9BRT6 129 aaKnown RBP18.65■□□□□ 0.58
PCDH1-203ENST00000394536 ZNF202O95125 648 aa18.65■□□□□ 0.58
PCDH1-203ENST00000394536 RESTQ13127 1097 aa18.65■□□□□ 0.58
PCDH1-203ENST00000394536 ARHGEF25Q86VW2 580 aa18.65■□□□□ 0.58
PCDH1-203ENST00000394536 UTP14AQ9BVJ6 771 aaKnown RBP18.65■□□□□ 0.58
PCDH1-203ENST00000394536 PUS3Q9BZE2 481 aaKnown RBP18.65■□□□□ 0.58
PCDH1-203ENST00000394536 TRMT112Q9UI30 125 aaKnown RBP18.65■□□□□ 0.58
PCDH1-203ENST00000394536 TSR1Q2NL82 804 aaKnown RBP18.65■□□□□ 0.58
PCDH1-203ENST00000394536 NAA16Q6N069 864 aaPredicted RBP18.65■□□□□ 0.58
PCDH1-203ENST00000394536 PPFIBP1Q86W92 1011 aa18.65■□□□□ 0.58
PCDH1-203ENST00000394536 PCMTD1Q96MG8 357 aaPredicted RBP18.65■□□□□ 0.58
PCDH1-203ENST00000394536 HAUS7Q99871 368 aa18.65■□□□□ 0.58
PCDH1-203ENST00000394536 PFKFB2O60825 505 aa18.64■□□□□ 0.58
PCDH1-203ENST00000394536 NDUFA8P51970 172 aa18.64■□□□□ 0.58
PCDH1-203ENST00000394536 DCAF5Q96JK2 942 aa18.64■□□□□ 0.58
PCDH1-203ENST00000394536 HELLSQ9NRZ9 838 aa18.64■□□□□ 0.58
PCDH1-203ENST00000394536 LRP2BPQ9P2M1 347 aa18.64■□□□□ 0.58
PCDH1-203ENST00000394536 IQSEC3Q9UPP2 1182 aaPredicted RBP18.64■□□□□ 0.58
PCDH1-203ENST00000394536 PDIA3P30101 505 aaKnown RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms