RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 RABGGTAQ92696 567 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 CTAGE15A4D2H0 777 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 LUC7L3O95232 432 aaKnown RBP13.39□□□□□ -0.27
NPHP4-202ENST00000378161 CTAGE8P0CG41 777 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 CPLX2Q6PUV4 134 aaKnown RBP13.39□□□□□ -0.27
NPHP4-202ENST00000378161 CEP128Q6ZU80 1094 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 CTAGE6Q86UF2 777 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 CTAGE4Q8IX94 777 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 MPHOSPH8Q99549 860 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 EXOC6BQ9Y2D4 811 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 CYP46A1Q9Y6A2 500 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 HSP90AB2PQ58FF8 381 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 B4GALNT2Q8NHY0 566 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 SYTL4Q96C24 671 aaPredicted RBP13.39□□□□□ -0.27
NPHP4-202ENST00000378161 ZBTB40Q9NUA8 1239 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 CCDC175P0C221 793 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 WDHD1O75717 1129 aaPredicted RBP13.38□□□□□ -0.27
NPHP4-202ENST00000378161 H2AFXP16104 143 aaPredicted RBP13.38□□□□□ -0.27
NPHP4-202ENST00000378161 IFFO1Q0D2I5 559 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 CBX8Q9HC52 389 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 TPX2Q9ULW0 747 aaKnown RBP13.38□□□□□ -0.27
NPHP4-202ENST00000378161 FANCAO15360 1455 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 RHOXF2BP0C7M4 288 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 CHMP4BP1P59074 171 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 IDI1Q13907 227 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 SH2D4BQ5SQS7 431 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 ARL10Q8N8L6 244 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 SPDYE1Q8NFV5 336 aaPredicted RBP13.38□□□□□ -0.27
NPHP4-202ENST00000378161 ZCRB1Q8TBF4 217 aaKnown RBP13.38□□□□□ -0.27
NPHP4-202ENST00000378161 RHOXF2Q9BQY4 288 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 SGSM2O43147 1006 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 STX1AQ16623 288 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 TSR1Q2NL82 804 aaKnown RBP13.38□□□□□ -0.27
NPHP4-202ENST00000378161 GNPTABQ3T906 1256 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 TTC22Q5TAA0 569 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 TRIM42Q8IWZ5 723 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 ADGBQ8N7X0 1667 aa13.38□□□□□ -0.27
NPHP4-202ENST00000378161 ZNF330Q9Y3S2 320 aaPredicted RBP13.38□□□□□ -0.27
NPHP4-202ENST00000378161 CCDC189A1A4V9 331 aa13.37□□□□□ -0.27
NPHP4-202ENST00000378161 STX6O43752 255 aa13.37□□□□□ -0.27
NPHP4-202ENST00000378161 SMARCA5O60264 1052 aaPredicted RBP13.37□□□□□ -0.27
NPHP4-202ENST00000378161 ZSCAN22P10073 491 aaPredicted RBP13.37□□□□□ -0.27
NPHP4-202ENST00000378161 NUDT16Q96DE0 195 aaKnown RBP13.37□□□□□ -0.27
NPHP4-202ENST00000378161 RMDN2Q96LZ7 410 aa13.37□□□□□ -0.27
NPHP4-202ENST00000378161 FSD1Q9BTV5 496 aa13.37□□□□□ -0.27
NPHP4-202ENST00000378161 SCAND2PQ9GZW5 306 aaPredicted RBP13.37□□□□□ -0.27
NPHP4-202ENST00000378161 CD2BP2O95400 341 aaKnown RBP13.37□□□□□ -0.27
NPHP4-202ENST00000378161 CCT2P78371 535 aaKnown RBP13.37□□□□□ -0.27
NPHP4-202ENST00000378161 SLMAPQ14BN4 828 aa13.37□□□□□ -0.27
NPHP4-202ENST00000378161 AMOTQ4VCS5 1084 aa13.37□□□□□ -0.27
NPHP4-202ENST00000378161 CHAMP1Q96JM3 812 aa13.37□□□□□ -0.27
NPHP4-202ENST00000378161 PUF60Q9UHX1 559 aaKnown RBP13.37□□□□□ -0.27
NPHP4-202ENST00000378161 USP16Q9Y5T5 823 aa13.37□□□□□ -0.27
NPHP4-202ENST00000378161 EMILIN1Q9Y6C2 1016 aa13.37□□□□□ -0.27
NPHP4-202ENST00000378161 FYB1O15117 783 aa13.37□□□□□ -0.27
NPHP4-202ENST00000378161 ICA1Q05084 483 aa13.37□□□□□ -0.27
NPHP4-202ENST00000378161 CCDC47Q96A33 483 aaKnown RBP13.37□□□□□ -0.27
NPHP4-202ENST00000378161 DDX27Q96GQ7 796 aaKnown RBP13.37□□□□□ -0.27
NPHP4-202ENST00000378161 BRD1O95696 1058 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 PECAM1P16284 738 aaPredicted RBP13.36□□□□□ -0.27
NPHP4-202ENST00000378161 CA8P35219 290 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 CUL3Q13618 768 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 SMARCC2Q8TAQ2 1214 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 DTNBP1Q96EV8 351 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 ZSCAN31Q96LW9 406 aaPredicted RBP13.36□□□□□ -0.27
NPHP4-202ENST00000378161 RPS6KA3P51812 740 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 MAP7D1Q3KQU3 841 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 CCDC40Q4G0X9 1142 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 ODF2Q5BJF6 829 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 TMTC2Q8N394 836 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 MSL3Q8N5Y2 521 aaKnown RBP13.36□□□□□ -0.27
NPHP4-202ENST00000378161 BICD1Q96G01 975 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 MBIPQ9NS73 344 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 KLC4Q9NSK0 619 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 DMRT2Q9Y5R5 561 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 CPLX1O14810 134 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 GNGT1P63211 74 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 ANKRD1Q15327 319 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 CFAP100Q494V2 611 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 IQCEQ6IPM2 695 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 PROCA1Q8NCQ7 364 aaPredicted RBP13.36□□□□□ -0.27
NPHP4-202ENST00000378161 PCK1P35558 622 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 DDIT3P35638 169 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 CCDC57Q2TAC2 916 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 ZNF365Q70YC5 407 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 TRAPPC8Q9Y2L5 1435 aa13.36□□□□□ -0.27
NPHP4-202ENST00000378161 TOP1P11387 765 aaKnown RBP13.35□□□□□ -0.27
NPHP4-202ENST00000378161 GBP7Q8N8V2 638 aaPredicted RBP13.35□□□□□ -0.27
NPHP4-202ENST00000378161 CTNNBL1Q8WYA6 563 aaPredicted RBP13.35□□□□□ -0.27
NPHP4-202ENST00000378161 SPAG5Q96R06 1193 aa13.35□□□□□ -0.27
NPHP4-202ENST00000378161 CAPS2Q9BXY5 557 aa13.35□□□□□ -0.27
NPHP4-202ENST00000378161 IL1RAPL2Q9NP60 686 aa13.35□□□□□ -0.27
NPHP4-202ENST00000378161 SPECC1Q5M775 1068 aa13.35□□□□□ -0.27
NPHP4-202ENST00000378161 TRIM58Q8NG06 486 aa13.35□□□□□ -0.27
NPHP4-202ENST00000378161 INTS4Q96HW7 963 aaKnown RBP13.35□□□□□ -0.27
NPHP4-202ENST00000378161 PARD6BQ9BYG5 372 aa13.35□□□□□ -0.27
NPHP4-202ENST00000378161 VCXQ9H320 206 aa13.35□□□□□ -0.27
NPHP4-202ENST00000378161 PPP1R12BO60237 982 aaPredicted RBP13.35□□□□□ -0.27
NPHP4-202ENST00000378161 CEBPZQ03701 1054 aaKnown RBP13.35□□□□□ -0.27
NPHP4-202ENST00000378161 LARP1BQ659C4 914 aaKnown RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms