RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 VPS53Q5VIR6 699 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 NYAP1Q6ZVC0 841 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 CCAR2Q8N163 923 aaKnown RBP6.36□□□□□ -1.39
ATG4A-204ENST00000372246 TDRD7Q8NHU6 1098 aaKnown RBP6.36□□□□□ -1.39
ATG4A-204ENST00000372246 KCNK17Q96T54 332 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 NOL10Q9BSC4 688 aaKnown RBP6.36□□□□□ -1.39
ATG4A-204ENST00000372246 KIF20BQ96Q89 1820 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 CCDC171Q6TFL3 1326 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 SMC2O95347 1197 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 ATP1A3P13637 1013 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 DPCR1Q3MIW9 517 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 CCDC30Q5VVM6 783 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 ARMCX5Q6P1M9 558 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 TMC6Q7Z403 805 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 CCAR1Q8IX12 1150 aaKnown RBP6.36□□□□□ -1.39
ATG4A-204ENST00000372246 ZDHHC16Q969W1 377 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 EAF2Q96CJ1 260 aaPredicted RBP6.36□□□□□ -1.39
ATG4A-204ENST00000372246 TTC21BQ7Z4L5 1316 aa6.36□□□□□ -1.39
ATG4A-204ENST00000372246 CDK12Q9NYV4 1490 aaPredicted RBP6.36□□□□□ -1.39
ATG4A-204ENST00000372246 COL15A1P39059 1388 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 A0A0U1RQJ8 604 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 BECN2A8MW95 431 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 SASH3O75995 380 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 PTGER2P43116 358 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 AMPHP49418 695 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 GABPB1Q06547 395 aaPredicted RBP6.35□□□□□ -1.39
ATG4A-204ENST00000372246 ADGRD1Q6QNK2 874 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 ATRIPQ8WXE1 791 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 SMARCE1Q969G3 411 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 KIF1BPQ96EK5 621 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 TIGD1Q96MW7 591 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 USP28Q96RU2 1077 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 PLEKHA4Q9H4M7 779 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 WDR70Q9NW82 654 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 IFNKQ9P0W0 207 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 DNAI1Q9UI46 699 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 ABCA9Q8IUA7 1624 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 ANKRD26Q9UPS8 1709 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 EDC4Q6P2E9 1401 aaKnown RBP6.35□□□□□ -1.39
ATG4A-204ENST00000372246 H3BQV1 296 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 POLR3DP05423 398 aaPredicted RBP6.35□□□□□ -1.39
ATG4A-204ENST00000372246 PNMA6AP0CW24 399 aaPredicted RBP6.35□□□□□ -1.39
ATG4A-204ENST00000372246 LMOD1P29536 600 aaPredicted RBP6.35□□□□□ -1.39
ATG4A-204ENST00000372246 RESTQ13127 1097 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 IFFO2Q5TF58 517 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 BLOC1S2Q6QNY1 142 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 Q6ZUG5 572 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 TICAM2Q86XR7 235 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 DPF2Q92785 391 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 PPP1R13BQ96KQ4 1090 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 FSD1Q9BTV5 496 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 XPO4Q9C0E2 1151 aaKnown RBP6.35□□□□□ -1.39
ATG4A-204ENST00000372246 PAXBP1Q9Y5B6 917 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 ALKQ9UM73 1620 aa6.35□□□□□ -1.39
ATG4A-204ENST00000372246 CEP170BQ9Y4F5 1589 aaPredicted RBP6.34□□□□□ -1.39
ATG4A-204ENST00000372246 SSH2Q76I76 1423 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 TK2O00142 265 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 SASH1O94885 1247 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 SLU7O95391 586 aaKnown RBP6.34□□□□□ -1.39
ATG4A-204ENST00000372246 ZKSCAN1P17029 563 aaPredicted RBP6.34□□□□□ -1.39
ATG4A-204ENST00000372246 RAD51AP2Q09MP3 1159 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 APOBRQ0VD83 1088 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 SCRN1Q12765 414 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 SNW1Q13573 536 aaKnown RBP6.34□□□□□ -1.39
ATG4A-204ENST00000372246 TMEM132AQ24JP5 1023 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 HOMER1Q86YM7 354 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 CARD6Q9BX69 1037 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 PREX1Q8TCU6 1659 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 LMTK2Q8IWU2 1503 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 TMEM232C9JQI7 657 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 HRO43593 1189 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 URI1O94763 535 aaPredicted RBP6.34□□□□□ -1.39
ATG4A-204ENST00000372246 TPM3P06753 285 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 RPS6KB1P23443 525 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 ADD1P35611 737 aaKnown RBP6.34□□□□□ -1.39
ATG4A-204ENST00000372246 ME1P48163 572 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 BEND3Q5T5X7 828 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 WWC2Q6AWC2 1192 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 FOXR1Q6PIV2 292 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 C10orf67Q8IYJ2 551 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 IL17RAQ96F46 866 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 DNAJC2Q99543 621 aaKnown RBP6.34□□□□□ -1.39
ATG4A-204ENST00000372246 IRX2Q9BZI1 471 aaPredicted RBP6.34□□□□□ -1.39
ATG4A-204ENST00000372246 ECHDC1Q9NTX5 307 aa6.34□□□□□ -1.39
ATG4A-204ENST00000372246 NPHP3Q7Z494 1330 aa6.34□□□□□ -1.4
ATG4A-204ENST00000372246 TUBGCP6Q96RT7 1819 aa6.33□□□□□ -1.4
ATG4A-204ENST00000372246 CTDNEP1O95476 244 aa6.33□□□□□ -1.4
ATG4A-204ENST00000372246 HMGB1P09429 215 aaKnown RBP6.33□□□□□ -1.4
ATG4A-204ENST00000372246 TEFQ10587 303 aa6.33□□□□□ -1.4
ATG4A-204ENST00000372246 HSP90AB3PQ58FF7 597 aa6.33□□□□□ -1.4
ATG4A-204ENST00000372246 MPRIPQ6WCQ1 1025 aa6.33□□□□□ -1.4
ATG4A-204ENST00000372246 KRBA2Q6ZNG9 492 aa6.33□□□□□ -1.4
ATG4A-204ENST00000372246 STOX1Q6ZVD7 989 aa6.33□□□□□ -1.4
ATG4A-204ENST00000372246 CLASRPQ8N2M8 674 aaKnown RBP6.33□□□□□ -1.4
ATG4A-204ENST00000372246 FSIP1Q8NA03 581 aa6.33□□□□□ -1.4
ATG4A-204ENST00000372246 MAP4K1Q92918 833 aa6.33□□□□□ -1.4
ATG4A-204ENST00000372246 SLC26A8Q96RN1 970 aa6.33□□□□□ -1.4
ATG4A-204ENST00000372246 SUGCTQ9HAC7 445 aa6.33□□□□□ -1.4
ATG4A-204ENST00000372246 DDX19AQ9NUU7 478 aaKnown RBP6.33□□□□□ -1.4
ATG4A-204ENST00000372246 FAM53CQ9NYF3 392 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms