RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TAF7Q15545 349 aaPredicted RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 JARID2Q92833 1246 aaPredicted RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 HEMK1Q9Y5R4 338 aaPredicted RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 MANSC4A6NHS7 340 aaPredicted RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 ERLIN2O94905 339 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 GNAI2P04899 355 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 SUPT20HL2P0C7V6 817 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 SRGAP2CP0DJJ0 459 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 RAG1P15918 1043 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 KRT17Q04695 432 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 RNF180Q86T96 592 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 TCP11Q8WWU5 503 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 PPP1R9BQ96SB3 815 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 CCDC39Q9UFE4 941 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 MRPS17Q9Y2R5 130 aaKnown RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 TMEM94Q12767 1356 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 BECN2A8MW95 431 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 FKTNO75072 461 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 NPY2RP49146 381 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 MUM1L1Q5H9M0 696 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 BBXQ8WY36 941 aaPredicted RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 MLXIPQ9HAP2 919 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 IRAK4Q9NWZ3 460 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 ZHX1Q9UKY1 873 aaPredicted RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 DOLKQ9UPQ8 538 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 ANKRD50Q9ULJ7 1429 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 STAG3L1P0CL83 205 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 PRIM1P49642 420 aaKnown RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 FILIP1LQ4L180 1135 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 CATIPQ7Z7H3 387 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 METTL23Q86XA0 190 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 RNF169Q8NCN4 708 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 MASTLQ96GX5 879 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 RIOK1Q9BRS2 568 aaKnown RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 SYNCQ9H7C4 482 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 NPHP4O75161 1426 aaPredicted RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 PTPRCP08575 1304 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 CCDC194A0A1B0GVG4 234 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 KDM4AO75164 1064 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 YARSP54577 528 aaKnown RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 PREPLQ4J6C6 727 aaPredicted RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 CES5AQ6NT32 575 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 TTC30AQ86WT1 665 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 NDUFAF2Q8N183 169 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 NLRP7Q8WX94 980 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 UNC13AQ9UPW8 1703 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 ESYT2A0FGR8 921 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 MINDY4BA8MYZ0 360 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 TBCAO75347 108 aaKnown RBP4.69□□□□□ -1.66
USH2A-202ENST00000366942 NEFHP12036 1026 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 PDE4DQ08499 809 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 TROQ12816 1431 aaPredicted RBP4.69□□□□□ -1.66
USH2A-202ENST00000366942 UBE4AQ14139 1066 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 IMMTQ16891 758 aaKnown RBP4.69□□□□□ -1.66
USH2A-202ENST00000366942 LIN9Q5TKA1 542 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 CCDC73Q6ZRK6 1079 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 NCAPG2Q86XI2 1143 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 TRIML1Q8N9V2 468 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 CCDC148Q8NFR7 591 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 URGCPQ8TCY9 931 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 GLT1D1Q96MS3 346 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 TSG101Q99816 390 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 HAUS7Q99871 368 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 INO80BQ9C086 356 aaPredicted RBP4.69□□□□□ -1.66
USH2A-202ENST00000366942 DENND2AQ9ULE3 1009 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 GINS2Q9Y248 185 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 IPPQ9Y573 584 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 ATP8B3O60423 1300 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 FSD2A1L4K1 749 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 CELF2O95319 508 aaKnown RBP4.69□□□□□ -1.66
USH2A-202ENST00000366942 CETPP11597 493 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 GCKP35557 465 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 ARL4DP49703 201 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 PICALMQ13492 652 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 CUL4BQ13620 913 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 INAVAQ3KP66 663 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 MTERF2Q49AM1 385 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 NAA16Q6N069 864 aaPredicted RBP4.69□□□□□ -1.66
USH2A-202ENST00000366942 ZKSCAN4Q969J2 545 aaPredicted RBP4.69□□□□□ -1.66
USH2A-202ENST00000366942 NUB1Q9Y5A7 615 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 MMP10P09238 476 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 C16orf72Q14CZ0 275 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 ADALQ6DHV7 355 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 CHADLQ6NUI6 762 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 OLFM4Q6UX06 510 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 BBS5Q8N3I7 341 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 IFT74Q96LB3 600 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 ZBTB3Q9H5J0 574 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 STN1Q9H668 368 aaKnown RBP4.69□□□□□ -1.66
USH2A-202ENST00000366942 ATP10AO60312 1499 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 TRPM2O94759 1503 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 LRRC9Q6ZRR7 1453 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 SH3BP5O60239 455 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 MSCO60682 206 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 STAMBPO95630 424 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 TSPY3P0CV98 308 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 TSPY8P0CW00 308 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 RECQLP46063 649 aaPredicted RBP4.69□□□□□ -1.66
USH2A-202ENST00000366942 SLC45A4Q5BKX6 768 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 COLEC12Q5KU26 742 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms