RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 PSMA7O14818 248 aa12.46□□□□□ -0.42
CLIP1-203ENST00000361654 MCMDC2Q4G0Z9 681 aa12.46□□□□□ -0.42
CLIP1-203ENST00000361654 TMCO3Q6UWJ1 677 aa12.46□□□□□ -0.42
CLIP1-203ENST00000361654 ALG1Q9BT22 464 aa12.46□□□□□ -0.42
CLIP1-203ENST00000361654 N4BP3O15049 544 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 CAVIN2O95810 425 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 IQCGQ9H095 443 aaKnown RBP12.45□□□□□ -0.42
CLIP1-203ENST00000361654 CLIP2Q9UDT6 1046 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 ATP2A1O14983 1001 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 SNX16P57768 344 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 CCDC14Q49A88 953 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 RRAGBQ5VZM2 374 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 DPH6Q7L8W6 267 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 LINS1Q8NG48 757 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 KIF18AQ8NI77 898 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 CTAGE1Q96RT6 745 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 RIMS2Q9UQ26 1411 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 PRXQ9BXM0 1461 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 POTEB2H3BUK9 544 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 APBA3O96018 575 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 CCDC175P0C221 793 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 ASIC1P78348 528 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 DPP8Q6V1X1 898 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-203ENST00000361654 FMNL3Q8IVF7 1028 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 TEX11Q8IYF3 940 aa12.45□□□□□ -0.42
CLIP1-203ENST00000361654 NOP56O00567 594 aaKnown RBP12.44□□□□□ -0.42
CLIP1-203ENST00000361654 GOLGA1Q92805 767 aa12.44□□□□□ -0.42
CLIP1-203ENST00000361654 GJB2P29033 226 aa12.44□□□□□ -0.42
CLIP1-203ENST00000361654 GLT8D2Q9H1C3 349 aa12.44□□□□□ -0.42
CLIP1-203ENST00000361654 URI1O94763 535 aaPredicted RBP12.44□□□□□ -0.42
CLIP1-203ENST00000361654 MPNDQ8N594 471 aa12.44□□□□□ -0.42
CLIP1-203ENST00000361654 NFATC2IPQ8NCF5 419 aa12.44□□□□□ -0.42
CLIP1-203ENST00000361654 DDX23Q9BUQ8 820 aaKnown RBP12.44□□□□□ -0.42
CLIP1-203ENST00000361654 NKTRP30414 1462 aaKnown RBP12.44□□□□□ -0.42
CLIP1-203ENST00000361654 ABCA10Q8WWZ4 1543 aa12.44□□□□□ -0.42
CLIP1-203ENST00000361654 GAS8O95995 478 aa12.44□□□□□ -0.42
CLIP1-203ENST00000361654 GCP02774 474 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 RAB3GAP1Q15042 981 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 HACE1Q8IYU2 909 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 PDCL2Q8N4E4 241 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 CCDC77Q9BR77 488 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 BCCIPQ9P287 314 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLIP1-203ENST00000361654 UQCRHLA0A096LP55 91 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 ZBED4O75132 1171 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 UQCRHP07919 91 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 SP4Q02446 784 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 C6orf163Q5TEZ5 329 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 LMBR1Q8WVP7 490 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 BRF1Q92994 677 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 USP21Q9UK80 565 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 PARP1P09874 1014 aaKnown RBP12.43□□□□□ -0.42
CLIP1-203ENST00000361654 ALDH1B1P30837 517 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 EAPPQ56P03 285 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-203ENST00000361654 FLT4P35916 1363 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 CYLC1P35663 651 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-203ENST00000361654 SYKP43405 635 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 RAB11FIP4Q86YS3 637 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 ARHGAP45Q92619 1136 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 ZBTB21Q9ULJ3 1066 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 TIAM1Q13009 1591 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 SYCE3A1L190 88 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 TRIM75PA6NK02 468 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 IRX3P78415 501 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-203ENST00000361654 USP48Q86UV5 1035 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 CCDC155Q8N6L0 562 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 KCNG4Q8TDN1 519 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 RASAL2Q9UJF2 1139 aa12.43□□□□□ -0.42
CLIP1-203ENST00000361654 PPIP5K1Q6PFW1 1433 aa12.42□□□□□ -0.42
CLIP1-203ENST00000361654 CKAP4Q07065 602 aaKnown RBP12.42□□□□□ -0.42
CLIP1-203ENST00000361654 SMCR8Q8TEV9 937 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-203ENST00000361654 SELENOOQ9BVL4 669 aa12.42□□□□□ -0.42
CLIP1-203ENST00000361654 PAG1Q9NWQ8 432 aa12.42□□□□□ -0.42
CLIP1-203ENST00000361654 KDM5BQ9UGL1 1544 aa12.42□□□□□ -0.42
CLIP1-203ENST00000361654 EEF2P13639 858 aaKnown RBP12.42□□□□□ -0.42
CLIP1-203ENST00000361654 SMTNP53814 917 aa12.42□□□□□ -0.42
CLIP1-203ENST00000361654 SPOUT1Q5T280 376 aaKnown RBP12.42□□□□□ -0.42
CLIP1-203ENST00000361654 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-203ENST00000361654 TRIM6Q9C030 488 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-203ENST00000361654 CSADQ9Y600 493 aa12.42□□□□□ -0.42
CLIP1-203ENST00000361654 UHRF1BP1Q6BDS2 1440 aa12.42□□□□□ -0.42
CLIP1-203ENST00000361654 BIN1O00499 593 aa12.42□□□□□ -0.42
CLIP1-203ENST00000361654 HIBADHP31937 336 aaKnown RBP12.42□□□□□ -0.42
CLIP1-203ENST00000361654 C20orf194Q5TEA3 1177 aa12.42□□□□□ -0.42
CLIP1-203ENST00000361654 OTUD7BQ6GQQ9 843 aa12.42□□□□□ -0.42
CLIP1-203ENST00000361654 TOP2BQ02880 1626 aa12.42□□□□□ -0.42
CLIP1-203ENST00000361654 SH3TC1Q8TE82 1336 aa12.41□□□□□ -0.42
CLIP1-203ENST00000361654 FAM83GA6ND36 823 aa12.41□□□□□ -0.42
CLIP1-203ENST00000361654 RPL13P26373 211 aaKnown RBP12.41□□□□□ -0.42
CLIP1-203ENST00000361654 TNFAIP1Q13829 316 aa12.41□□□□□ -0.42
CLIP1-203ENST00000361654 MAGEB6Q8N7X4 407 aa12.41□□□□□ -0.42
CLIP1-203ENST00000361654 IFT74Q96LB3 600 aa12.41□□□□□ -0.42
CLIP1-203ENST00000361654 TRIM27P14373 513 aa12.41□□□□□ -0.42
CLIP1-203ENST00000361654 CDAN1Q8IWY9 1227 aa12.41□□□□□ -0.42
CLIP1-203ENST00000361654 RBM28Q9NW13 759 aaKnown RBP12.41□□□□□ -0.42
CLIP1-203ENST00000361654 RNF113AO15541 343 aaKnown RBP12.41□□□□□ -0.42
CLIP1-203ENST00000361654 SPECC1LQ69YQ0 1117 aa12.41□□□□□ -0.42
CLIP1-203ENST00000361654 FNBP1Q96RU3 617 aa12.41□□□□□ -0.42
CLIP1-203ENST00000361654 AZI2Q9H6S1 392 aa12.41□□□□□ -0.42
CLIP1-203ENST00000361654 WDR66Q8TBY9 1149 aa12.41□□□□□ -0.42
CLIP1-203ENST00000361654 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms