RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 MINPP1Q9UNW1 487 aa15.85■□□□□ 0.13
SQSTM1-201ENST00000360718 SCARF1Q14162 830 aa15.84■□□□□ 0.13
SQSTM1-201ENST00000360718 PUM3Q15397 648 aaKnown RBP15.84■□□□□ 0.13
SQSTM1-201ENST00000360718 DDX46Q7L014 1031 aaKnown RBP15.84■□□□□ 0.13
SQSTM1-201ENST00000360718 AKAP11Q9UKA4 1901 aa15.84■□□□□ 0.13
SQSTM1-201ENST00000360718 HAUS7Q99871 368 aa15.84■□□□□ 0.13
SQSTM1-201ENST00000360718 KLRG2A4D1S0 409 aaPredicted RBP15.83■□□□□ 0.13
SQSTM1-201ENST00000360718 HIP1O00291 1037 aa15.83■□□□□ 0.13
SQSTM1-201ENST00000360718 CCDC125Q86Z20 511 aa15.83■□□□□ 0.13
SQSTM1-201ENST00000360718 DNAJC2Q99543 621 aaKnown RBP15.83■□□□□ 0.13
SQSTM1-201ENST00000360718 DIAPH3Q9NSV4 1193 aa15.83■□□□□ 0.13
SQSTM1-201ENST00000360718 COL11A2P13942 1736 aaPredicted RBP15.83■□□□□ 0.12
SQSTM1-201ENST00000360718 TTC39AQ5SRH9 613 aa15.83■□□□□ 0.12
SQSTM1-201ENST00000360718 PI16Q6UXB8 463 aa15.83■□□□□ 0.12
SQSTM1-201ENST00000360718 LPIN2Q92539 896 aa15.83■□□□□ 0.12
SQSTM1-201ENST00000360718 ESYT1Q9BSJ8 1104 aa15.83■□□□□ 0.12
SQSTM1-201ENST00000360718 MYH7P12883 1935 aa15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 CD2BP2O95400 341 aaKnown RBP15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 CHGBP05060 677 aa15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 PHKA1P46020 1223 aa15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 GRAPQ13588 217 aa15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 GRAPLQ8TC17 118 aaPredicted RBP15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 RUFY2Q8WXA3 655 aa15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 PARP3Q9Y6F1 533 aa15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 IFIT1P09914 478 aaKnown RBP15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 SLC5A1P13866 664 aa15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 FSD1Q9BTV5 496 aa15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 GRPEL1Q9HAV7 217 aa15.82■□□□□ 0.12
SQSTM1-201ENST00000360718 GOLGB1Q14789 3259 aaKnown RBP15.81■□□□□ 0.12
SQSTM1-201ENST00000360718 CLEC17AQ6ZS10 378 aa15.81■□□□□ 0.12
SQSTM1-201ENST00000360718 RPGRQ92834 1020 aaKnown RBP15.81■□□□□ 0.12
SQSTM1-201ENST00000360718 USP26Q9BXU7 913 aa15.81■□□□□ 0.12
SQSTM1-201ENST00000360718 SNRKQ9NRH2 765 aa15.81■□□□□ 0.12
SQSTM1-201ENST00000360718 CCDC102BQ68D86 513 aa15.8■□□□□ 0.12
SQSTM1-201ENST00000360718 BRIP1Q9BX63 1249 aa15.8■□□□□ 0.12
SQSTM1-201ENST00000360718 GOLIM4O00461 696 aa15.8■□□□□ 0.12
SQSTM1-201ENST00000360718 MCAMP43121 646 aa15.8■□□□□ 0.12
SQSTM1-201ENST00000360718 NUCB2P80303 420 aa15.8■□□□□ 0.12
SQSTM1-201ENST00000360718 UPF1Q92900 1129 aaKnown RBP eCLIP15.8■□□□□ 0.129e-8■■■□□ 15.9
SQSTM1-201ENST00000360718 MYO5AQ9Y4I1 1855 aaKnown RBP15.8■□□□□ 0.12
SQSTM1-201ENST00000360718 KLRK1P26718 216 aa15.79■□□□□ 0.12
SQSTM1-201ENST00000360718 HOXA10P31260 410 aaPredicted RBP15.79■□□□□ 0.12
SQSTM1-201ENST00000360718 CWC27Q6UX04 472 aaKnown RBP15.79■□□□□ 0.12
SQSTM1-201ENST00000360718 FOXD4L1Q9NU39 408 aa15.79■□□□□ 0.12
SQSTM1-201ENST00000360718 PAG1Q9NWQ8 432 aa15.79■□□□□ 0.12
SQSTM1-201ENST00000360718 MYH13Q9UKX3 1938 aa15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 ST18O60284 1047 aa15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 SRGNP10124 158 aa15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 ZAP70P43403 619 aa15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 BCAMP50895 628 aa15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 SLFNL1Q499Z3 407 aa15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 FAM227BQ96M60 508 aa15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 CWC22Q9HCG8 908 aaKnown RBP15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 RFX7Q2KHR2 1363 aa15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 UQCRFS1P1P0C7P4 283 aa15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 ARID4AP29374 1257 aaPredicted RBP15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 FKBP4Q02790 459 aaKnown RBP eCLIP15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 KIAA1211Q6ZU35 1233 aa15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 TICAM2Q86XR7 235 aa15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 RBM17Q96I25 401 aaKnown RBP15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 ANO2Q9NQ90 1003 aa15.78■□□□□ 0.12
SQSTM1-201ENST00000360718 A0A0D9SFI3 127 aa15.77■□□□□ 0.12
SQSTM1-201ENST00000360718 SGSM2O43147 1006 aa15.77■□□□□ 0.12
SQSTM1-201ENST00000360718 NMIQ13287 307 aaPredicted RBP15.77■□□□□ 0.12
SQSTM1-201ENST00000360718 UBE4AQ14139 1066 aa15.77■□□□□ 0.12
SQSTM1-201ENST00000360718 ZNF512BQ96KM6 892 aaPredicted RBP15.77■□□□□ 0.12
SQSTM1-201ENST00000360718 ANKRD2Q9GZV1 360 aa15.77■□□□□ 0.12
SQSTM1-201ENST00000360718 CACNA1SQ13698 1873 aa15.77■□□□□ 0.12
SQSTM1-201ENST00000360718 MCCP23508 829 aa15.77■□□□□ 0.11
SQSTM1-201ENST00000360718 GYG1P46976 350 aa15.77■□□□□ 0.11
SQSTM1-201ENST00000360718 LRRFIP1Q32MZ4 808 aaKnown RBP15.77■□□□□ 0.11
SQSTM1-201ENST00000360718 KBTBD3Q8NAB2 608 aa15.77■□□□□ 0.11
SQSTM1-201ENST00000360718 CRAMP1Q96RY5 1269 aa15.77■□□□□ 0.11
SQSTM1-201ENST00000360718 PANK2Q9BZ23 570 aa15.77■□□□□ 0.11
SQSTM1-201ENST00000360718 EPB41L2O43491 1005 aaKnown RBP15.76■□□□□ 0.11
SQSTM1-201ENST00000360718 RASGRF1Q13972 1273 aa15.76■□□□□ 0.11
SQSTM1-201ENST00000360718 RRAGDQ9NQL2 400 aaPredicted RBP15.76■□□□□ 0.11
SQSTM1-201ENST00000360718 IRS2Q9Y4H2 1338 aa15.76■□□□□ 0.11
SQSTM1-201ENST00000360718 LRRC37AA6NMS7 1700 aa15.76■□□□□ 0.11
SQSTM1-201ENST00000360718 KCNJ4P48050 445 aa15.75■□□□□ 0.11
SQSTM1-201ENST00000360718 TXNRD3Q86VQ6 643 aa15.75■□□□□ 0.11
SQSTM1-201ENST00000360718 HMG20BQ9P0W2 317 aa15.75■□□□□ 0.11
SQSTM1-201ENST00000360718 RAD50Q92878 1312 aa15.75■□□□□ 0.11
SQSTM1-201ENST00000360718 CYP2E1P05181 493 aaPredicted RBP15.75■□□□□ 0.11
SQSTM1-201ENST00000360718 FAM84BQ96KN1 310 aaPredicted RBP15.75■□□□□ 0.11
SQSTM1-201ENST00000360718 IQSEC3Q9UPP2 1182 aaPredicted RBP15.75■□□□□ 0.11
SQSTM1-201ENST00000360718 LTBP1Q14766 1721 aa15.75■□□□□ 0.11
SQSTM1-201ENST00000360718 COL1A1P02452 1464 aaPredicted RBP15.74■□□□□ 0.11
SQSTM1-201ENST00000360718 BAG4O95429 457 aaKnown RBP15.74■□□□□ 0.11
SQSTM1-201ENST00000360718 PDE6BP35913 854 aa15.74■□□□□ 0.11
SQSTM1-201ENST00000360718 GPSM2P81274 684 aa15.74■□□□□ 0.11
SQSTM1-201ENST00000360718 OLFM4Q6UX06 510 aa15.74■□□□□ 0.11
SQSTM1-201ENST00000360718 GPR101Q96P66 508 aaPredicted RBP15.74■□□□□ 0.11
SQSTM1-201ENST00000360718 SEC62Q99442 399 aaKnown RBP15.74■□□□□ 0.11
SQSTM1-201ENST00000360718 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.74■□□□□ 0.11
SQSTM1-201ENST00000360718 ZNF804BA4D1E1 1349 aa15.74■□□□□ 0.11
SQSTM1-201ENST00000360718 NPR1P16066 1061 aa15.74■□□□□ 0.11
SQSTM1-201ENST00000360718 TTF1Q15361 905 aaPredicted RBP15.74■□□□□ 0.11
SQSTM1-201ENST00000360718 PIH1D3Q9NQM4 214 aaKnown RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms