RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 SKILP12757 684 aa14.2□□□□□ -0.14
CLIP3-201ENST00000360535 RXRAP19793 462 aa14.2□□□□□ -0.14
CLIP3-201ENST00000360535 STK38Q15208 465 aa14.2□□□□□ -0.14
CLIP3-201ENST00000360535 TSGA10IPQ3SY00 556 aa14.2□□□□□ -0.14
CLIP3-201ENST00000360535 A0A1B0GUL7 405 aa14.2□□□□□ -0.14
CLIP3-201ENST00000360535 PFKFB2O60825 505 aa14.2□□□□□ -0.14
CLIP3-201ENST00000360535 SMC2O95347 1197 aa14.2□□□□□ -0.14
CLIP3-201ENST00000360535 GTF2F1P35269 517 aaKnown RBP eCLIP14.2□□□□□ -0.14
CLIP3-201ENST00000360535 STX1AQ16623 288 aa14.2□□□□□ -0.14
CLIP3-201ENST00000360535 PI16Q6UXB8 463 aa14.2□□□□□ -0.14
CLIP3-201ENST00000360535 MED1Q15648 1581 aaPredicted RBP14.2□□□□□ -0.14
CLIP3-201ENST00000360535 PDIA4P13667 645 aaKnown RBP14.19□□□□□ -0.14
CLIP3-201ENST00000360535 TAF7LQ5H9L4 462 aa14.19□□□□□ -0.14
CLIP3-201ENST00000360535 ZNF396Q96N95 335 aaPredicted RBP14.19□□□□□ -0.14
CLIP3-201ENST00000360535 M0R2C6 588 aa14.19□□□□□ -0.14
CLIP3-201ENST00000360535 PDIA3P30101 505 aaKnown RBP14.19□□□□□ -0.14
CLIP3-201ENST00000360535 PTPN21Q16825 1174 aa14.19□□□□□ -0.14
CLIP3-201ENST00000360535 CCDC69A6NI79 296 aa14.19□□□□□ -0.14
CLIP3-201ENST00000360535 CPLX1O14810 134 aa14.19□□□□□ -0.14
CLIP3-201ENST00000360535 ADD1P35611 737 aaKnown RBP14.19□□□□□ -0.14
CLIP3-201ENST00000360535 CEP135Q66GS9 1140 aa14.19□□□□□ -0.14
CLIP3-201ENST00000360535 ADORA1P30542 326 aa14.18□□□□□ -0.14
CLIP3-201ENST00000360535 IQCB1Q15051 598 aa14.18□□□□□ -0.14
CLIP3-201ENST00000360535 LRRC8AQ8IWT6 810 aa14.18□□□□□ -0.14
CLIP3-201ENST00000360535 CLIC4Q9Y696 253 aa14.18□□□□□ -0.14
CLIP3-201ENST00000360535 MAST3O60307 1309 aa14.18□□□□□ -0.14
CLIP3-201ENST00000360535 KDM6AO15550 1401 aaPredicted RBP14.18□□□□□ -0.14
CLIP3-201ENST00000360535 MARCKSP29966 332 aaPredicted RBP14.18□□□□□ -0.14
CLIP3-201ENST00000360535 OSBP2Q969R2 916 aa14.18□□□□□ -0.14
CLIP3-201ENST00000360535 PCDHA7Q9UN72 937 aa14.18□□□□□ -0.14
CLIP3-201ENST00000360535 KLF18A0A0U1RQI7 1052 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 NBPF26B4DH59 902 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 APPP05067 770 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 TTC39AQ5SRH9 613 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 NBPF14Q5TI25 921 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 NBPF10Q6P3W6 841 aaKnown RBP14.17□□□□□ -0.14
CLIP3-201ENST00000360535 ATG9AQ7Z3C6 839 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 NBPF15Q8N660 670 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 PLBD2Q8NHP8 589 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 ALDH8A1Q9H2A2 487 aaPredicted RBP14.17□□□□□ -0.14
CLIP3-201ENST00000360535 CWC25Q9NXE8 425 aaPredicted RBP14.17□□□□□ -0.14
CLIP3-201ENST00000360535 RCOR1Q9UKL0 485 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 NCAPD2Q15021 1401 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 CRYBG1Q9Y4K1 1723 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 GOLGA8BA8MQT2 603 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 HMGB1P09429 215 aaKnown RBP14.17□□□□□ -0.14
CLIP3-201ENST00000360535 NDUFA8P51970 172 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 NCBP1Q09161 790 aaKnown RBP14.17□□□□□ -0.14
CLIP3-201ENST00000360535 SMAP1Q8IYB5 467 aaPredicted RBP14.17□□□□□ -0.14
CLIP3-201ENST00000360535 CEP57L1Q8IYX8 460 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 SMARCC2Q8TAQ2 1214 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 C8orf76Q96K31 380 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 CEP126Q9P2H0 1117 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 FOXO4P98177 505 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 SNW1Q13573 536 aaKnown RBP14.17□□□□□ -0.14
CLIP3-201ENST00000360535 PTPN14Q15678 1187 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 ANO10Q9NW15 660 aa14.17□□□□□ -0.14
CLIP3-201ENST00000360535 ORC3Q9UBD5 711 aaPredicted RBP14.17□□□□□ -0.14
CLIP3-201ENST00000360535 RNF113AO15541 343 aaKnown RBP14.16□□□□□ -0.14
CLIP3-201ENST00000360535 FAM160A1Q05DH4 1040 aa14.16□□□□□ -0.14
CLIP3-201ENST00000360535 HSP90AA4PQ58FG1 418 aa14.16□□□□□ -0.14
CLIP3-201ENST00000360535 RBM43Q6ZSC3 357 aaKnown RBP14.16□□□□□ -0.14
CLIP3-201ENST00000360535 DCAF5Q96JK2 942 aa14.16□□□□□ -0.14
CLIP3-201ENST00000360535 PRDM4Q9UKN5 801 aa14.16□□□□□ -0.14
CLIP3-201ENST00000360535 LMO7Q8WWI1 1683 aa14.16□□□□□ -0.14
CLIP3-201ENST00000360535 RABL6Q3YEC7 729 aaPredicted RBP14.16□□□□□ -0.14
CLIP3-201ENST00000360535 RGPD5Q99666 1765 aa14.16□□□□□ -0.14
CLIP3-201ENST00000360535 GNL2Q13823 731 aaKnown RBP14.16□□□□□ -0.14
CLIP3-201ENST00000360535 SYNE3Q6ZMZ3 975 aa14.16□□□□□ -0.14
CLIP3-201ENST00000360535 AIFM3Q96NN9 605 aa14.16□□□□□ -0.14
CLIP3-201ENST00000360535 DENND2AQ9ULE3 1009 aa14.16□□□□□ -0.14
CLIP3-201ENST00000360535 FER1L4A9Z1Z3 1794 aa14.15□□□□□ -0.14
CLIP3-201ENST00000360535 SMTNL1A8MU46 457 aa14.15□□□□□ -0.14
CLIP3-201ENST00000360535 CCDC57Q2TAC2 916 aa14.15□□□□□ -0.14
CLIP3-201ENST00000360535 DPCR1Q3MIW9 517 aa14.15□□□□□ -0.14
CLIP3-201ENST00000360535 ZMYM1Q5SVZ6 1142 aa14.15□□□□□ -0.14
CLIP3-201ENST00000360535 NAA16Q6N069 864 aaPredicted RBP14.15□□□□□ -0.14
CLIP3-201ENST00000360535 TMC6Q7Z403 805 aa14.15□□□□□ -0.14
CLIP3-201ENST00000360535 LRP10Q7Z4F1 713 aa14.15□□□□□ -0.14
CLIP3-201ENST00000360535 ILDR1Q86SU0 546 aaPredicted RBP14.15□□□□□ -0.14
CLIP3-201ENST00000360535 DHX40Q8IX18 779 aaKnown RBP14.15□□□□□ -0.14
CLIP3-201ENST00000360535 MRPS27Q92552 414 aaKnown RBP14.15□□□□□ -0.14
CLIP3-201ENST00000360535 FAM89AQ96GI7 184 aa14.15□□□□□ -0.14
CLIP3-201ENST00000360535 ADGRL3Q9HAR2 1447 aa14.15□□□□□ -0.14
CLIP3-201ENST00000360535 PRC1O43663 620 aa14.15□□□□□ -0.14
CLIP3-201ENST00000360535 FDPSP14324 419 aaKnown RBP14.15□□□□□ -0.14
CLIP3-201ENST00000360535 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.15□□□□□ -0.14
CLIP3-201ENST00000360535 RALYLQ86SE5 291 aaKnown RBP14.15□□□□□ -0.14
CLIP3-201ENST00000360535 LLPHQ9BRT6 129 aaKnown RBP14.15□□□□□ -0.14
CLIP3-201ENST00000360535 DNAJC5Q9H3Z4 198 aa14.15□□□□□ -0.14
CLIP3-201ENST00000360535 HELLSQ9NRZ9 838 aa14.15□□□□□ -0.14
CLIP3-201ENST00000360535 CARMIL3Q8ND23 1372 aa14.15□□□□□ -0.15
CLIP3-201ENST00000360535 EYA2O00167 538 aa14.14□□□□□ -0.15
CLIP3-201ENST00000360535 LMOD1P29536 600 aaPredicted RBP14.14□□□□□ -0.15
CLIP3-201ENST00000360535 EXOSC10Q01780 885 aaKnown RBP14.14□□□□□ -0.15
CLIP3-201ENST00000360535 SCARF1Q14162 830 aa14.14□□□□□ -0.15
CLIP3-201ENST00000360535 SYNE4Q8N205 404 aa14.14□□□□□ -0.15
CLIP3-201ENST00000360535 IFNKQ9P0W0 207 aa14.14□□□□□ -0.15
CLIP3-201ENST00000360535 CTAGE5O15320 804 aa14.14□□□□□ -0.15
CLIP3-201ENST00000360535 ATF3P18847 181 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms