RNA–Protein interactions for RNA: ENST00000358028.8

NIPAL3-203, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 1,757 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-203ENST00000358028 SETDB2Q96T68 719 aa17.09■□□□□ 0.33
NIPAL3-203ENST00000358028 NIP7Q9Y221 180 aaKnown RBP eCLIP17.09■□□□□ 0.33
NIPAL3-203ENST00000358028 ESPNB1AK53 854 aa17.08■□□□□ 0.33
NIPAL3-203ENST00000358028 VPS53Q5VIR6 699 aa17.08■□□□□ 0.33
NIPAL3-203ENST00000358028 GIGYF2Q6Y7W6 1299 aaKnown RBP17.08■□□□□ 0.33
NIPAL3-203ENST00000358028 GPT2Q8TD30 523 aa17.08■□□□□ 0.33
NIPAL3-203ENST00000358028 MAP4K1Q92918 833 aa17.08■□□□□ 0.33
NIPAL3-203ENST00000358028 ZSWIM6Q9HCJ5 1215 aa17.08■□□□□ 0.33
NIPAL3-203ENST00000358028 UBN2Q6ZU65 1347 aa17.08■□□□□ 0.32
NIPAL3-203ENST00000358028 RFX7Q2KHR2 1363 aa17.08■□□□□ 0.32
NIPAL3-203ENST00000358028 CACNA1SQ13698 1873 aa17.08■□□□□ 0.32
NIPAL3-203ENST00000358028 TNRC6CQ9HCJ0 1690 aaKnown RBP17.08■□□□□ 0.32
NIPAL3-203ENST00000358028 YBX3P16989 372 aaKnown RBP eCLIP17.07■□□□□ 0.322e-6■■■□□ 19.2
NIPAL3-203ENST00000358028 ZKSCAN1P17029 563 aaPredicted RBP17.07■□□□□ 0.32
NIPAL3-203ENST00000358028 ADCK5Q3MIX3 580 aa17.07■□□□□ 0.32
NIPAL3-203ENST00000358028 CREB3L3Q68CJ9 461 aa17.07■□□□□ 0.32
NIPAL3-203ENST00000358028 CCDC191Q8NCU4 936 aa17.07■□□□□ 0.32
NIPAL3-203ENST00000358028 PDRG1Q9NUG6 133 aa17.07■□□□□ 0.32
NIPAL3-203ENST00000358028 RPAP1Q9BWH6 1393 aaPredicted RBP17.07■□□□□ 0.32
NIPAL3-203ENST00000358028 CPA1P15085 419 aa17.07■□□□□ 0.32
NIPAL3-203ENST00000358028 GPTP24298 496 aa17.07■□□□□ 0.32
NIPAL3-203ENST00000358028 KCNJ4P48050 445 aa17.07■□□□□ 0.32
NIPAL3-203ENST00000358028 CCDC24Q8N4L8 307 aa17.07■□□□□ 0.32
NIPAL3-203ENST00000358028 CHMP3Q9Y3E7 222 aa17.07■□□□□ 0.32
NIPAL3-203ENST00000358028 CYP46A1Q9Y6A2 500 aa17.07■□□□□ 0.32
NIPAL3-203ENST00000358028 CHAMP1Q96JM3 812 aa17.06■□□□□ 0.32
NIPAL3-203ENST00000358028 DBNDD2Q9BQY9 259 aa17.06■□□□□ 0.32
NIPAL3-203ENST00000358028 FAM177BA6PVY3 158 aa17.05■□□□□ 0.32
NIPAL3-203ENST00000358028 SLC27A2O14975 620 aa17.05■□□□□ 0.32
NIPAL3-203ENST00000358028 PRR5LQ6MZQ0 368 aa17.05■□□□□ 0.32
NIPAL3-203ENST00000358028 SYAP1Q96A49 352 aaPredicted RBP17.05■□□□□ 0.32
NIPAL3-203ENST00000358028 ZSCAN31Q96LW9 406 aaPredicted RBP17.05■□□□□ 0.32
NIPAL3-203ENST00000358028 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.05■□□□□ 0.32
NIPAL3-203ENST00000358028 ZNF34Q8IZ26 560 aa17.05■□□□□ 0.32
NIPAL3-203ENST00000358028 CNBD1Q8NA66 436 aa17.05■□□□□ 0.32
NIPAL3-203ENST00000358028 EDC3Q96F86 508 aaKnown RBP17.05■□□□□ 0.32
NIPAL3-203ENST00000358028 LAMB2P55268 1798 aa17.04■□□□□ 0.32
NIPAL3-203ENST00000358028 HS1BP3Q53T59 392 aa17.04■□□□□ 0.32
NIPAL3-203ENST00000358028 RNF20Q5VTR2 975 aa17.04■□□□□ 0.32
NIPAL3-203ENST00000358028 LRSAM1Q6UWE0 723 aa17.04■□□□□ 0.32
NIPAL3-203ENST00000358028 ATG9AQ7Z3C6 839 aa17.04■□□□□ 0.32
NIPAL3-203ENST00000358028 NBPF5PQ86XG9 351 aaPredicted RBP17.04■□□□□ 0.32
NIPAL3-203ENST00000358028 HAUS7Q99871 368 aa17.04■□□□□ 0.32
NIPAL3-203ENST00000358028 LARP6Q9BRS8 491 aaKnown RBP17.04■□□□□ 0.32
NIPAL3-203ENST00000358028 ISCA1Q9BUE6 129 aa17.04■□□□□ 0.32
NIPAL3-203ENST00000358028 GPR108Q9NPR9 543 aa17.04■□□□□ 0.32
NIPAL3-203ENST00000358028 SH2B1Q9NRF2 756 aaPredicted RBP17.04■□□□□ 0.32
NIPAL3-203ENST00000358028 LARGE1O95461 756 aa17.03■□□□□ 0.32
NIPAL3-203ENST00000358028 PSMA5P28066 241 aa17.03■□□□□ 0.32
NIPAL3-203ENST00000358028 ZNF589Q86UQ0 364 aaPredicted RBP17.03■□□□□ 0.32
NIPAL3-203ENST00000358028 TMEM87AQ8NBN3 555 aa17.03■□□□□ 0.32
NIPAL3-203ENST00000358028 ZNF784Q8NCA9 323 aaPredicted RBP17.03■□□□□ 0.32
NIPAL3-203ENST00000358028 WWC3Q9ULE0 1092 aa17.03■□□□□ 0.32
NIPAL3-203ENST00000358028 DDX60Q8IY21 1712 aaKnown RBP17.03■□□□□ 0.32
NIPAL3-203ENST00000358028 NPHP1O15259 732 aa17.02■□□□□ 0.32
NIPAL3-203ENST00000358028 IL15P40933 162 aaPredicted RBP17.02■□□□□ 0.32
NIPAL3-203ENST00000358028 TCIRG1Q13488 830 aa17.02■□□□□ 0.32
NIPAL3-203ENST00000358028 SUSD4Q5VX71 490 aa17.02■□□□□ 0.32
NIPAL3-203ENST00000358028 DNAJC2Q99543 621 aaKnown RBP17.02■□□□□ 0.32
NIPAL3-203ENST00000358028 SMC3Q9UQE7 1217 aa17.02■□□□□ 0.32
NIPAL3-203ENST00000358028 ZNF609O15014 1411 aa17.02■□□□□ 0.31
NIPAL3-203ENST00000358028 ABCC12Q96J65 1359 aa17.02■□□□□ 0.31
NIPAL3-203ENST00000358028 ARFGEF1Q9Y6D6 1849 aa17.02■□□□□ 0.31
NIPAL3-203ENST00000358028 A0A0G2JLW4 131 aa17.02■□□□□ 0.31
NIPAL3-203ENST00000358028 GRIN3BO60391 1043 aa17.02■□□□□ 0.31
NIPAL3-203ENST00000358028 TAF5LO75529 589 aa17.02■□□□□ 0.31
NIPAL3-203ENST00000358028 HSP90AB3PQ58FF7 597 aa17.02■□□□□ 0.31
NIPAL3-203ENST00000358028 HMG20BQ9P0W2 317 aa17.02■□□□□ 0.31
NIPAL3-203ENST00000358028 TMEM63CQ9P1W3 806 aa17.02■□□□□ 0.31
NIPAL3-203ENST00000358028 EYA2O00167 538 aa17.01■□□□□ 0.31
NIPAL3-203ENST00000358028 PDIA4P13667 645 aaKnown RBP17.01■□□□□ 0.31
NIPAL3-203ENST00000358028 TGFB2P61812 414 aa17.01■□□□□ 0.31
NIPAL3-203ENST00000358028 CCDC83Q8IWF9 413 aa17.01■□□□□ 0.31
NIPAL3-203ENST00000358028 RBM27Q9P2N5 1060 aaKnown RBP17.01■□□□□ 0.31
NIPAL3-203ENST00000358028 CIAO1O76071 339 aa17■□□□□ 0.31
NIPAL3-203ENST00000358028 NTSR2O95665 410 aa17■□□□□ 0.31
NIPAL3-203ENST00000358028 DPEP1P16444 411 aa17■□□□□ 0.31
NIPAL3-203ENST00000358028 CHRNA5P30532 468 aa17■□□□□ 0.31
NIPAL3-203ENST00000358028 ST5P78524 1137 aa17■□□□□ 0.31
NIPAL3-203ENST00000358028 NLRP10Q86W26 655 aa17■□□□□ 0.31
NIPAL3-203ENST00000358028 RBSNQ9H1K0 784 aa17■□□□□ 0.31
NIPAL3-203ENST00000358028 ATP6V1DQ9Y5K8 247 aa17■□□□□ 0.31
NIPAL3-203ENST00000358028 NDUFB9Q9Y6M9 179 aa17■□□□□ 0.31
NIPAL3-203ENST00000358028 ZSCAN22P10073 491 aaPredicted RBP17■□□□□ 0.31
NIPAL3-203ENST00000358028 TSGA10IPQ3SY00 556 aa17■□□□□ 0.31
NIPAL3-203ENST00000358028 BLOC1S2Q6QNY1 142 aa17■□□□□ 0.31
NIPAL3-203ENST00000358028 TPTE2Q6XPS3 522 aa17■□□□□ 0.31
NIPAL3-203ENST00000358028 ALDH8A1Q9H2A2 487 aaPredicted RBP17■□□□□ 0.31
NIPAL3-203ENST00000358028 STX6O43752 255 aa16.99■□□□□ 0.31
NIPAL3-203ENST00000358028 SYT1P21579 422 aa16.99■□□□□ 0.31
NIPAL3-203ENST00000358028 KCNA3P22001 575 aa16.99■□□□□ 0.31
NIPAL3-203ENST00000358028 TRIM28Q13263 835 aaKnown RBP16.99■□□□□ 0.31
NIPAL3-203ENST00000358028 LRRC24Q50LG9 513 aa16.99■□□□□ 0.31
NIPAL3-203ENST00000358028 PARP10Q53GL7 1025 aa16.99■□□□□ 0.31
NIPAL3-203ENST00000358028 KBTBD3Q8NAB2 608 aa16.99■□□□□ 0.31
NIPAL3-203ENST00000358028 ZNF594Q96JF6 807 aaPredicted RBP16.99■□□□□ 0.31
NIPAL3-203ENST00000358028 PDLIM2Q96JY6 352 aa16.99■□□□□ 0.31
NIPAL3-203ENST00000358028 NEUROD6Q96NK8 337 aa16.99■□□□□ 0.31
NIPAL3-203ENST00000358028 NSFL1CQ9UNZ2 370 aaKnown RBP16.99■□□□□ 0.31
NIPAL3-203ENST00000358028 SPEF2Q9C093 1822 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms