RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 GOLGA6L10A0A0M3HER8 536 aa13.42□□□□□ -0.26
COL9A1-202ENST00000357250 C6orf229H3BNL8 230 aa13.42□□□□□ -0.26
COL9A1-202ENST00000357250 PSMA7O14818 248 aa13.42□□□□□ -0.26
COL9A1-202ENST00000357250 ZKSCAN5Q9Y2L8 839 aa13.42□□□□□ -0.26
COL9A1-202ENST00000357250 NBPF6Q5VWK0 638 aa13.42□□□□□ -0.26
COL9A1-202ENST00000357250 GIMAP6Q6P9H5 292 aa13.42□□□□□ -0.26
COL9A1-202ENST00000357250 NBPF4Q96M43 638 aa13.42□□□□□ -0.26
COL9A1-202ENST00000357250 IFIT1BQ5T764 474 aaKnown RBP13.41□□□□□ -0.26
COL9A1-202ENST00000357250 PAG1Q9NWQ8 432 aa13.41□□□□□ -0.26
COL9A1-202ENST00000357250 AKR1B10O60218 316 aa13.41□□□□□ -0.26
COL9A1-202ENST00000357250 TBCAO75347 108 aaKnown RBP13.41□□□□□ -0.26
COL9A1-202ENST00000357250 PRPHP41219 470 aa13.41□□□□□ -0.26
COL9A1-202ENST00000357250 Q6ZUG5 572 aa13.41□□□□□ -0.26
COL9A1-202ENST00000357250 IP6K1Q92551 441 aa13.41□□□□□ -0.26
COL9A1-202ENST00000357250 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.41□□□□□ -0.26
COL9A1-202ENST00000357250 TRIM75PA6NK02 468 aa13.41□□□□□ -0.26
COL9A1-202ENST00000357250 BBXQ8WY36 941 aaPredicted RBP13.41□□□□□ -0.26
COL9A1-202ENST00000357250 NEO1Q92859 1461 aa13.41□□□□□ -0.26
COL9A1-202ENST00000357250 RNF113AO15541 343 aaKnown RBP13.4□□□□□ -0.26
COL9A1-202ENST00000357250 NOLC1Q14978 699 aaKnown RBP eCLIP13.4□□□□□ -0.26
COL9A1-202ENST00000357250 ANO6Q4KMQ2 910 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 SPECC1Q5M775 1068 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 DACT1Q9NYF0 836 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 SPTLC2O15270 562 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 SKILP12757 684 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 CYP7A1P22680 504 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 PLEKHM2Q8IWE5 1019 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 NECAB1Q8N987 351 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 PKNOX2Q96KN3 472 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 CNPY2Q9Y2B0 182 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 ZCCHC11Q5TAX3 1644 aaKnown RBP13.4□□□□□ -0.26
COL9A1-202ENST00000357250 PLCG2P16885 1265 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 DHX32Q7L7V1 743 aaKnown RBP13.4□□□□□ -0.26
COL9A1-202ENST00000357250 DCAF5Q96JK2 942 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 FBXO3Q9UK99 471 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 ZBTB7BO15156 539 aaPredicted RBP13.4□□□□□ -0.26
COL9A1-202ENST00000357250 ST5P78524 1137 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 TCERG1LQ5VWI1 586 aa13.4□□□□□ -0.26
COL9A1-202ENST00000357250 TSPOAP1O95153 1857 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 PPP1R2P41236 205 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 RAB11FIP4Q86YS3 637 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 MPHOSPH6Q99547 160 aaKnown RBP13.39□□□□□ -0.27
COL9A1-202ENST00000357250 SLC4A4Q9Y6R1 1079 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 EDC4Q6P2E9 1401 aaKnown RBP13.39□□□□□ -0.27
COL9A1-202ENST00000357250 ERVK-7P63135 1459 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 PRC1O43663 620 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 CCDC175P0C221 793 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 XRCC6P12956 609 aaKnown RBP eCLIP13.39□□□□□ -0.27
COL9A1-202ENST00000357250 STAT6P42226 847 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 NMIQ13287 307 aaPredicted RBP13.39□□□□□ -0.27
COL9A1-202ENST00000357250 HLTFQ14527 1009 aaKnown RBP eCLIP13.39□□□□□ -0.27
COL9A1-202ENST00000357250 NLRP3Q96P20 1036 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 ERICH4A6NGS2 130 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 CHMLP26374 656 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 SLC9C2Q5TAH2 1124 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 RRAGBQ5VZM2 374 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 CTR9Q6PD62 1173 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 GIGYF2Q6Y7W6 1299 aaKnown RBP13.39□□□□□ -0.27
COL9A1-202ENST00000357250 NBPF5PQ86XG9 351 aaPredicted RBP13.39□□□□□ -0.27
COL9A1-202ENST00000357250 NYXQ9GZU5 481 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 TSPY3P0CV98 308 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 TSPY8P0CW00 308 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 KRT83P78385 493 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 NAA16Q6N069 864 aaPredicted RBP13.39□□□□□ -0.27
COL9A1-202ENST00000357250 FMNL3Q8IVF7 1028 aa13.39□□□□□ -0.27
COL9A1-202ENST00000357250 IQSEC3Q9UPP2 1182 aaPredicted RBP13.39□□□□□ -0.27
COL9A1-202ENST00000357250 TMCO5BA8MYB1 307 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 CREB3L3Q68CJ9 461 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 CEP112Q8N8E3 955 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 HELLSQ9NRZ9 838 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 PRDM15P57071 1507 aaPredicted RBP13.38□□□□□ -0.27
COL9A1-202ENST00000357250 CTAGE15A4D2H0 777 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 DTNBO60941 627 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 CTAGE8P0CG41 777 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 CTAGE6Q86UF2 777 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 CTAGE4Q8IX94 777 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 KLHDC4Q8TBB5 520 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 FERMT1Q9BQL6 677 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 RTL1A6NKG5 1358 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 RFC4P35249 363 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 CBX1P83916 185 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 SPECC1LQ69YQ0 1117 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 KRT222Q8N1A0 295 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 TBC1D5Q92609 795 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 SPAG5Q96R06 1193 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 FEZ1Q99689 392 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 ARFGAP3Q9NP61 516 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 DDX21Q9NR30 783 aaKnown RBP eCLIP13.38□□□□□ -0.27
COL9A1-202ENST00000357250 STX8Q9UNK0 236 aa13.38□□□□□ -0.27
COL9A1-202ENST00000357250 BICDL2A1A5D9 508 aa13.37□□□□□ -0.27
COL9A1-202ENST00000357250 RUFY3Q7L099 469 aa13.37□□□□□ -0.27
COL9A1-202ENST00000357250 CCDC186Q7Z3E2 898 aa13.37□□□□□ -0.27
COL9A1-202ENST00000357250 CCDC144CPQ8IYA2 1237 aa13.37□□□□□ -0.27
COL9A1-202ENST00000357250 USP26Q9BXU7 913 aa13.37□□□□□ -0.27
COL9A1-202ENST00000357250 C6orf50Q9HD87 102 aa13.37□□□□□ -0.27
COL9A1-202ENST00000357250 KCNQ3O43525 872 aa13.37□□□□□ -0.27
COL9A1-202ENST00000357250 TYRO3Q06418 890 aa13.37□□□□□ -0.27
COL9A1-202ENST00000357250 CCDC174Q6PII3 467 aa13.37□□□□□ -0.27
COL9A1-202ENST00000357250 SYCP3Q8IZU3 236 aa13.37□□□□□ -0.27
COL9A1-202ENST00000357250 PREX2Q70Z35 1606 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms