RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 LPIN2Q92539 896 aa15.35■□□□□ 0.05
CLK3-201ENST00000345005 PANK2Q9BZ23 570 aa15.35■□□□□ 0.05
CLK3-201ENST00000345005 ZMYND15Q9H091 742 aa15.35■□□□□ 0.05
CLK3-201ENST00000345005 NDUFB9Q9Y6M9 179 aa15.35■□□□□ 0.05
CLK3-201ENST00000345005 PHF14O94880 888 aa15.34■□□□□ 0.05
CLK3-201ENST00000345005 MCM2P49736 904 aa15.34■□□□□ 0.05
CLK3-201ENST00000345005 NEK4P51957 841 aa15.34■□□□□ 0.05
CLK3-201ENST00000345005 PTH1RQ03431 593 aa15.34■□□□□ 0.05
CLK3-201ENST00000345005 HSP90AA2PQ14568 343 aaPredicted RBP15.34■□□□□ 0.05
CLK3-201ENST00000345005 KLHL40Q2TBA0 621 aa15.34■□□□□ 0.05
CLK3-201ENST00000345005 HS1BP3Q53T59 392 aa15.34■□□□□ 0.05
CLK3-201ENST00000345005 MED23Q9ULK4 1368 aa15.34■□□□□ 0.05
CLK3-201ENST00000345005 A0A1B0GUL6 1792 aa15.34■□□□□ 0.05
CLK3-201ENST00000345005 SLC5A1P13866 664 aa15.33■□□□□ 0.05
CLK3-201ENST00000345005 FGFR2P21802 821 aa15.33■□□□□ 0.05
CLK3-201ENST00000345005 MAP4K1Q92918 833 aa15.33■□□□□ 0.05
CLK3-201ENST00000345005 NLRP3Q96P20 1036 aa15.33■□□□□ 0.05
CLK3-201ENST00000345005 SNX14Q9Y5W7 946 aa15.33■□□□□ 0.05
CLK3-201ENST00000345005 UQCRFS1P1P0C7P4 283 aa15.33■□□□□ 0.04
CLK3-201ENST00000345005 FKBP4Q02790 459 aaKnown RBP eCLIP15.33■□□□□ 0.04
CLK3-201ENST00000345005 MCMDC2Q4G0Z9 681 aa15.33■□□□□ 0.04
CLK3-201ENST00000345005 ANKRD18AQ8IVF6 992 aa15.33■□□□□ 0.04
CLK3-201ENST00000345005 KCNB2Q92953 911 aa15.33■□□□□ 0.04
CLK3-201ENST00000345005 PPP1R9BQ96SB3 815 aa15.33■□□□□ 0.04
CLK3-201ENST00000345005 HELLSQ9NRZ9 838 aa15.33■□□□□ 0.04
CLK3-201ENST00000345005 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.32■□□□□ 0.04
CLK3-201ENST00000345005 SSFA2P28290 1259 aa15.32■□□□□ 0.04
CLK3-201ENST00000345005 KCNJ4P48050 445 aa15.32■□□□□ 0.04
CLK3-201ENST00000345005 TERF1P54274 439 aa15.32■□□□□ 0.04
CLK3-201ENST00000345005 NECTIN1Q15223 517 aa15.32■□□□□ 0.04
CLK3-201ENST00000345005 HELBQ8NG08 1087 aaPredicted RBP15.32■□□□□ 0.04
CLK3-201ENST00000345005 CARMIL3Q8ND23 1372 aa15.31■□□□□ 0.04
CLK3-201ENST00000345005 PLSCR1O15162 318 aa15.31■□□□□ 0.04
CLK3-201ENST00000345005 RNF113AO15541 343 aaKnown RBP15.31■□□□□ 0.04
CLK3-201ENST00000345005 ZFYP08048 801 aaPredicted RBP15.31■□□□□ 0.04
CLK3-201ENST00000345005 ZKSCAN1P17029 563 aaPredicted RBP15.31■□□□□ 0.04
CLK3-201ENST00000345005 TXNRD1Q16881 649 aa15.31■□□□□ 0.04
CLK3-201ENST00000345005 BSDC1Q9NW68 430 aaPredicted RBP15.31■□□□□ 0.04
CLK3-201ENST00000345005 RBM8AQ9Y5S9 174 aaKnown RBP15.31■□□□□ 0.04
CLK3-201ENST00000345005 TAF5LO75529 589 aa15.31■□□□□ 0.04
CLK3-201ENST00000345005 RNF20Q5VTR2 975 aa15.31■□□□□ 0.04
CLK3-201ENST00000345005 PRPF40BQ6NWY9 871 aaKnown RBP15.31■□□□□ 0.04
CLK3-201ENST00000345005 MYO5AQ9Y4I1 1855 aaKnown RBP15.31■□□□□ 0.04
CLK3-201ENST00000345005 NPHP1O15259 732 aa15.3■□□□□ 0.04
CLK3-201ENST00000345005 ARID4AP29374 1257 aaPredicted RBP15.3■□□□□ 0.04
CLK3-201ENST00000345005 CHRNDQ07001 517 aa15.3■□□□□ 0.04
CLK3-201ENST00000345005 TTF1Q15361 905 aaPredicted RBP15.3■□□□□ 0.04
CLK3-201ENST00000345005 ZMYM1Q5SVZ6 1142 aa15.3■□□□□ 0.04
CLK3-201ENST00000345005 CCDC102BQ68D86 513 aa15.3■□□□□ 0.04
CLK3-201ENST00000345005 C3orf67Q6ZVT6 689 aa15.3■□□□□ 0.04
CLK3-201ENST00000345005 ZNF589Q86UQ0 364 aaPredicted RBP15.3■□□□□ 0.04
CLK3-201ENST00000345005 RASEFQ8IZ41 740 aa15.3■□□□□ 0.04
CLK3-201ENST00000345005 SRCAPQ6ZRS2 3230 aa15.3■□□□□ 0.04
CLK3-201ENST00000345005 ZAP70P43403 619 aa15.29■□□□□ 0.04
CLK3-201ENST00000345005 SCARF1Q14162 830 aa15.29■□□□□ 0.04
CLK3-201ENST00000345005 NFIXQ14938 502 aa15.29■□□□□ 0.04
CLK3-201ENST00000345005 TM6SF1Q9BZW5 370 aa15.29■□□□□ 0.04
CLK3-201ENST00000345005 MCAMP43121 646 aa15.29■□□□□ 0.04
CLK3-201ENST00000345005 NASPP49321 788 aaPredicted RBP15.29■□□□□ 0.04
CLK3-201ENST00000345005 ZNF445P59923 1031 aa15.29■□□□□ 0.04
CLK3-201ENST00000345005 CREB3L3Q68CJ9 461 aa15.29■□□□□ 0.04
CLK3-201ENST00000345005 ZSCAN25Q6NSZ9 544 aa15.29■□□□□ 0.04
CLK3-201ENST00000345005 PROM2Q8N271 834 aa15.29■□□□□ 0.04
CLK3-201ENST00000345005 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.29■□□□□ 0.041e-6■■□□□ 12.7
CLK3-201ENST00000345005 HMG20BQ9P0W2 317 aa15.29■□□□□ 0.04
CLK3-201ENST00000345005 PHKA1P46020 1223 aa15.28■□□□□ 0.04
CLK3-201ENST00000345005 RPS8P62241 208 aaKnown RBP15.28■□□□□ 0.04
CLK3-201ENST00000345005 ZSCAN30Q86W11 494 aa15.28■□□□□ 0.04
CLK3-201ENST00000345005 DDX49Q9Y6V7 483 aaKnown RBP15.28■□□□□ 0.04
CLK3-201ENST00000345005 U3KPZ7 1027 aaPredicted RBP15.28■□□□□ 0.04
CLK3-201ENST00000345005 COL4A1P02462 1669 aa15.27■□□□□ 0.04
CLK3-201ENST00000345005 DOCK2Q92608 1830 aa15.27■□□□□ 0.04
CLK3-201ENST00000345005 SLC27A2O14975 620 aa15.27■□□□□ 0.04
CLK3-201ENST00000345005 BAG4O95429 457 aaKnown RBP15.27■□□□□ 0.04
CLK3-201ENST00000345005 APBA3O96018 575 aa15.27■□□□□ 0.04
CLK3-201ENST00000345005 GYS1P13807 737 aa15.27■□□□□ 0.04
CLK3-201ENST00000345005 CNBD1Q8NA66 436 aa15.27■□□□□ 0.04
CLK3-201ENST00000345005 SEC62Q99442 399 aaKnown RBP15.27■□□□□ 0.04
CLK3-201ENST00000345005 UPF3BQ9BZI7 483 aaKnown RBP15.27■□□□□ 0.04
CLK3-201ENST00000345005 PSMA5P28066 241 aa15.27■□□□□ 0.03
CLK3-201ENST00000345005 UBE4AQ14139 1066 aa15.27■□□□□ 0.03
CLK3-201ENST00000345005 TSGA10IPQ3SY00 556 aa15.27■□□□□ 0.03
CLK3-201ENST00000345005 CCDC129Q6ZRS4 1044 aa15.27■□□□□ 0.03
CLK3-201ENST00000345005 RGPD3A6NKT7 1758 aaPredicted RBP15.26■□□□□ 0.03
CLK3-201ENST00000345005 RGPD4Q7Z3J3 1758 aa15.26■□□□□ 0.03
CLK3-201ENST00000345005 CASTP20810 708 aaKnown RBP15.26■□□□□ 0.03
CLK3-201ENST00000345005 CELF1Q92879 486 aaKnown RBP15.26■□□□□ 0.03
CLK3-201ENST00000345005 DSCC1Q9BVC3 393 aa15.26■□□□□ 0.03
CLK3-201ENST00000345005 ZSWIM6Q9HCJ5 1215 aa15.26■□□□□ 0.03
CLK3-201ENST00000345005 MINPP1Q9UNW1 487 aa15.26■□□□□ 0.03
CLK3-201ENST00000345005 CYP46A1Q9Y6A2 500 aa15.26■□□□□ 0.03
CLK3-201ENST00000345005 TNRC6CQ9HCJ0 1690 aaKnown RBP15.25■□□□□ 0.03
CLK3-201ENST00000345005 CHGBP05060 677 aa15.25■□□□□ 0.03
CLK3-201ENST00000345005 CYP2E1P05181 493 aaPredicted RBP15.25■□□□□ 0.03
CLK3-201ENST00000345005 TM4SF1P30408 202 aa15.25■□□□□ 0.03
CLK3-201ENST00000345005 PI16Q6UXB8 463 aa15.25■□□□□ 0.03
CLK3-201ENST00000345005 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.25■□□□□ 0.03
CLK3-201ENST00000345005 SPATA5Q8NB90 893 aa15.25■□□□□ 0.03
CLK3-201ENST00000345005 TMX3Q96JJ7 454 aa15.25■□□□□ 0.03
CLK3-201ENST00000345005 JAKMIP1Q96N16 626 aaKnown RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms