RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PUS7Q96PZ0 661 aaKnown RBP9.89□□□□□ -0.83
RTN3-202ENST00000339997 hCG_1642624A0A1W2PR95 340 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 STARD3NLO95772 234 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 ANAPC15P60006 121 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 ASIC1P78348 528 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 WTAPQ15007 396 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 SMAP1Q8IYB5 467 aaPredicted RBP9.89□□□□□ -0.83
RTN3-202ENST00000339997 CCDC114Q96M63 670 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 CCDC42Q96M95 316 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 KRT13P13646 458 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 STAT6P42226 847 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 MCMDC2Q4G0Z9 681 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 HOOK3Q86VS8 718 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 LRRC59Q96AG4 307 aaKnown RBP9.88□□□□□ -0.83
RTN3-202ENST00000339997 PER1O15534 1290 aaPredicted RBP9.88□□□□□ -0.83
RTN3-202ENST00000339997 CD2BP2O95400 341 aaKnown RBP9.88□□□□□ -0.83
RTN3-202ENST00000339997 IRX5P78411 483 aaPredicted RBP9.88□□□□□ -0.83
RTN3-202ENST00000339997 PTPROQ16827 1216 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 CPLX4Q7Z7G2 160 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 TRMT44Q8IYL2 757 aaKnown RBP9.88□□□□□ -0.83
RTN3-202ENST00000339997 BAG1Q99933 345 aaPredicted RBP9.88□□□□□ -0.83
RTN3-202ENST00000339997 MYL10Q9BUA6 226 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 POLKQ9UBT6 870 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 ADCY10Q96PN6 1610 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 CCDC160A6NGH7 325 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 CAVIN2O95810 425 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 MCM7P33993 719 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 MTHFSDQ2M296 383 aaKnown RBP9.88□□□□□ -0.83
RTN3-202ENST00000339997 HS1BP3Q53T59 392 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 CDC37L1Q7L3B6 337 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 TESK2Q96S53 571 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 TRIM31Q9BZY9 425 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 ANKRD18BA2A2Z9 1011 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 POTEB2H3BUK9 544 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 KIF5AQ12840 1032 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 TMOD3Q9NYL9 352 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 KDM2BQ8NHM5 1336 aa9.88□□□□□ -0.83
RTN3-202ENST00000339997 F8W031 263 aaPredicted RBP9.87□□□□□ -0.83
RTN3-202ENST00000339997 NAA25Q14CX7 972 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 HEATR3Q7Z4Q2 680 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 ZNF215Q9UL58 517 aaPredicted RBP9.87□□□□□ -0.83
RTN3-202ENST00000339997 SAMM50Q9Y512 469 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 PNMA6EA0A0J9YXQ4 647 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 A0A1W2PRG0 241 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 CCDC122Q5T0U0 273 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 RPRD2Q5VT52 1461 aaKnown RBP9.87□□□□□ -0.83
RTN3-202ENST00000339997 CALML4Q96GE6 196 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 EXOC1Q9NV70 894 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 GCOM1H8Y6P7 765 aaPredicted RBP9.87□□□□□ -0.83
RTN3-202ENST00000339997 GRM8O00222 908 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 MYZAPP0CAP1 466 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 TMEM266Q2M3C6 531 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 WDR78Q5VTH9 848 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 HMG20BQ9P0W2 317 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 DISP1Q96F81 1524 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 UGGT2Q9NYU1 1516 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 FSD2A1L4K1 749 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 IVLP07476 585 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 PLS1Q14651 629 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 RTN1Q16799 776 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 SPECC1LQ69YQ0 1117 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 RUFY3Q7L099 469 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 SYCP3Q8IZU3 236 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 ARHGAP45Q92619 1136 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 FEZ1Q99689 392 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 DESI2Q9BSY9 194 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 NRBP1Q9UHY1 535 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 PALD1Q9ULE6 856 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 AMOTL2Q9Y2J4 779 aa9.87□□□□□ -0.83
RTN3-202ENST00000339997 ACEP12821 1306 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 VWA3AA6NCI4 1184 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 ADAMTS2O95450 1211 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 CYLC1P35663 651 aaPredicted RBP9.86□□□□□ -0.83
RTN3-202ENST00000339997 TFCP2Q12800 502 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 GRIPAP1Q4V328 841 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 CABP5Q9NP86 173 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 SLC4A4Q9Y6R1 1079 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 PTPN23Q9H3S7 1636 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 FGFR1OPO95684 399 aaKnown RBP9.86□□□□□ -0.83
RTN3-202ENST00000339997 ZNF174Q15697 407 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 MSL1Q68DK7 614 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 CCDC91Q7Z6B0 441 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 KAT14Q9H8E8 782 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 HOMER2Q9NSB8 354 aa9.86□□□□□ -0.83
RTN3-202ENST00000339997 NDUFAB1O14561 156 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 PRDM1O75626 825 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 NEBLO76041 1014 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 CETN2P41208 172 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 ADKP55263 362 aaKnown RBP9.85□□□□□ -0.83
RTN3-202ENST00000339997 CCDC121Q6ZUS5 278 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 THEMISQ8N1K5 641 aaPredicted RBP9.85□□□□□ -0.83
RTN3-202ENST00000339997 ERO1AQ96HE7 468 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 CWC25Q9NXE8 425 aaPredicted RBP9.85□□□□□ -0.83
RTN3-202ENST00000339997 C6orf229H3BNL8 230 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 ZPR1O75312 459 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 ECM2O94769 699 aaPredicted RBP9.85□□□□□ -0.83
RTN3-202ENST00000339997 SLC5A1P13866 664 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 ZNF75DP51815 510 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 EIF4A2Q14240 407 aaKnown RBP9.85□□□□□ -0.83
RTN3-202ENST00000339997 GPT2Q8TD30 523 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms