RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 I3L4J1 428 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 EPSTI1Q96J88 318 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 DRC1Q96MC2 740 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 GBP5Q96PP8 586 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 NLRP5P59047 1200 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 LRCH2Q5VUJ6 765 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 UBL4BQ8N7F7 174 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 ECHDC1Q9NTX5 307 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 NCOA1Q15788 1441 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 MRPS9P82933 396 aaKnown RBP16.1■□□□□ 0.17
COL7A1-201ENST00000328333 CCDC144CPQ8IYA2 1237 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 MED4Q9NPJ6 270 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 CALML3P27482 149 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 MFSD6Q6ZSS7 791 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 CCDC63Q8NA47 563 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 EXOC6BQ9Y2D4 811 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 GOLGA6BA6NDN3 693 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 HSP90AA5PQ58FG0 334 aa16.1■□□□□ 0.17
COL7A1-201ENST00000328333 MGEA5O60502 916 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 RAB3GAP1Q15042 981 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 PPP1R7Q15435 360 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 METTL24Q5JXM2 366 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 ATP6V0A2Q9Y487 856 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 BIN1O00499 593 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 SEL1L2Q5TEA6 688 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 NEK11Q8NG66 645 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 TBC1D31Q96DN5 1066 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 APBB1IPQ7Z5R6 666 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-201ENST00000328333 TTC21BQ7Z4L5 1316 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 IQGAP2Q13576 1575 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 TSPYL2Q9H2G4 693 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-201ENST00000328333 SYNJ1O43426 1573 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 IFIT3O14879 490 aaKnown RBP16.09■□□□□ 0.17
COL7A1-201ENST00000328333 PHLDB3Q6NSJ2 640 aa16.09■□□□□ 0.17
COL7A1-201ENST00000328333 PPFIA4O75335 1185 aa16.08■□□□□ 0.17
COL7A1-201ENST00000328333 IFIT5Q13325 482 aaKnown RBP16.08■□□□□ 0.17
COL7A1-201ENST00000328333 HVCN1Q96D96 273 aa16.08■□□□□ 0.17
COL7A1-201ENST00000328333 ARHGAP45Q92619 1136 aa16.08■□□□□ 0.17
COL7A1-201ENST00000328333 AQRO60306 1485 aaKnown RBP eCLIP16.08■□□□□ 0.17
COL7A1-201ENST00000328333 GNAQP50148 359 aa16.08■□□□□ 0.17
COL7A1-201ENST00000328333 RILPL1Q5EBL4 403 aa16.08■□□□□ 0.17
COL7A1-201ENST00000328333 PIK3R4Q99570 1358 aa16.08■□□□□ 0.16
COL7A1-201ENST00000328333 SPTY2D1Q68D10 685 aaPredicted RBP16.08■□□□□ 0.16
COL7A1-201ENST00000328333 WDHD1O75717 1129 aaPredicted RBP16.08■□□□□ 0.16
COL7A1-201ENST00000328333 NUCB1Q02818 461 aa16.08■□□□□ 0.16
COL7A1-201ENST00000328333 SRGAP1Q7Z6B7 1085 aa16.08■□□□□ 0.16
COL7A1-201ENST00000328333 UTP14AQ9BVJ6 771 aaKnown RBP16.08■□□□□ 0.16
COL7A1-201ENST00000328333 ZMAT2Q96NC0 199 aaKnown RBP16.08■□□□□ 0.16
COL7A1-201ENST00000328333 RFC1P35251 1148 aaPredicted RBP16.08■□□□□ 0.16
COL7A1-201ENST00000328333 EVI5O60447 810 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 RTL9Q8NET4 1388 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 SMC5Q8IY18 1101 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 HAUS2Q9NVX0 235 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 ARAP1Q96P48 1450 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 CCDC186Q7Z3E2 898 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 RBM5P52756 815 aaKnown RBP eCLIP16.07■□□□□ 0.16
COL7A1-201ENST00000328333 VPS52Q8N1B4 723 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 NAPGQ99747 312 aaPredicted RBP16.07■□□□□ 0.16
COL7A1-201ENST00000328333 SPATS2LQ9NUQ6 558 aaKnown RBP16.07■□□□□ 0.16
COL7A1-201ENST00000328333 TMEM67Q5HYA8 995 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 SSH1Q8WYL5 1049 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 BICD1Q96G01 975 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 NCAPGQ9BPX3 1015 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 SERPINA10Q9UK55 444 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 TRIM35Q9UPQ4 493 aa16.07■□□□□ 0.16
COL7A1-201ENST00000328333 RAB11FIP4Q86YS3 637 aa16.06■□□□□ 0.16
COL7A1-201ENST00000328333 BAG1Q99933 345 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-201ENST00000328333 SNAPC4Q5SXM2 1469 aa16.06■□□□□ 0.16
COL7A1-201ENST00000328333 C8orf74Q6P047 294 aa16.06■□□□□ 0.16
COL7A1-201ENST00000328333 UBXN1Q04323 297 aa16.06■□□□□ 0.16
COL7A1-201ENST00000328333 ADGBQ8N7X0 1667 aa16.06■□□□□ 0.16
COL7A1-201ENST00000328333 BAG3O95817 575 aa16.06■□□□□ 0.16
COL7A1-201ENST00000328333 NEK1Q96PY6 1258 aa16.06■□□□□ 0.16
COL7A1-201ENST00000328333 CFAP43Q8NDM7 1665 aa16.06■□□□□ 0.16
COL7A1-201ENST00000328333 GKAP1Q5VSY0 366 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-201ENST00000328333 UBLCP1Q8WVY7 318 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-201ENST00000328333 F13A1P00488 732 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 VIMP08670 466 aaKnown RBP16.05■□□□□ 0.16
COL7A1-201ENST00000328333 CYP26C1Q6V0L0 522 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 NESP48681 1621 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 AKR1B15C9JRZ8 316 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-201ENST00000328333 POLR3DP05423 398 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-201ENST00000328333 EVCP57679 992 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 RRAGBQ5VZM2 374 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 GIMAP6Q6P9H5 292 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 HAUS8Q9BT25 410 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 ORC3Q9UBD5 711 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-201ENST00000328333 RUSC2Q8N2Y8 1516 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 IDEP14735 1019 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 ZNF444Q8N0Y2 327 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-201ENST00000328333 MIER3Q7Z3K6 550 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 SDCCAG8Q86SQ7 713 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-201ENST00000328333 ATP2A3Q93084 1043 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 USP48Q86UV5 1035 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 CRACR2BQ8N4Y2 399 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-201ENST00000328333 KIFAP3Q92845 792 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 PARP2Q9UGN5 583 aa16.05■□□□□ 0.16
COL7A1-201ENST00000328333 RPL13P26373 211 aaKnown RBP16.04■□□□□ 0.16
COL7A1-201ENST00000328333 SYCE1Q8N0S2 351 aa16.04■□□□□ 0.16
COL7A1-201ENST00000328333 AOPEPQ8N6M6 819 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms