RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 KIF16BQ96L93 1317 aa20.2■□□□□ 0.82
HDDC2-201ENST00000318787 PASKQ96RG2 1323 aa20.2■□□□□ 0.82
HDDC2-201ENST00000318787 PCNTO95613 3336 aa20.2■□□□□ 0.82
HDDC2-201ENST00000318787 USP44Q9H0E7 712 aa20.2■□□□□ 0.82
HDDC2-201ENST00000318787 MKRN1Q9UHC7 482 aaKnown RBP20.2■□□□□ 0.82
HDDC2-201ENST00000318787 UTYO14607 1347 aa20.19■□□□□ 0.82
HDDC2-201ENST00000318787 USP17L3A6NCW0 530 aa20.19■□□□□ 0.82
HDDC2-201ENST00000318787 USP17L4A6NCW7 530 aa20.19■□□□□ 0.82
HDDC2-201ENST00000318787 RPS12P25398 132 aaKnown RBP20.19■□□□□ 0.82
HDDC2-201ENST00000318787 FMR1Q06787 632 aaKnown RBP eCLIP20.19■□□□□ 0.82
HDDC2-201ENST00000318787 USP17L1Q7RTZ2 530 aa20.19■□□□□ 0.82
HDDC2-201ENST00000318787 PODNQ7Z5L7 613 aa20.19■□□□□ 0.82
HDDC2-201ENST00000318787 DPF2Q92785 391 aa20.19■□□□□ 0.82
HDDC2-201ENST00000318787 CREBZFQ9NS37 354 aa20.19■□□□□ 0.82
HDDC2-201ENST00000318787 ZNF646O15015 1829 aaPredicted RBP20.18■□□□□ 0.82
HDDC2-201ENST00000318787 TMEM88BA6NKF7 163 aa20.18■□□□□ 0.82
HDDC2-201ENST00000318787 TRAF5O00463 557 aa20.18■□□□□ 0.82
HDDC2-201ENST00000318787 VIL1P09327 827 aaKnown RBP20.18■□□□□ 0.82
HDDC2-201ENST00000318787 RSBN1LQ6PCB5 846 aaPredicted RBP20.18■□□□□ 0.82
HDDC2-201ENST00000318787 COA1Q9GZY4 146 aa20.18■□□□□ 0.82
HDDC2-201ENST00000318787 BCAR3O75815 825 aa20.17■□□□□ 0.82
HDDC2-201ENST00000318787 UBTFL1P0CB47 393 aaPredicted RBP20.17■□□□□ 0.82
HDDC2-201ENST00000318787 HIRAP54198 1017 aaPredicted RBP20.17■□□□□ 0.82
HDDC2-201ENST00000318787 ANKRD44Q8N8A2 993 aa20.17■□□□□ 0.82
HDDC2-201ENST00000318787 JMYQ8N9B5 988 aa20.17■□□□□ 0.82
HDDC2-201ENST00000318787 MXD3Q9BW11 206 aa20.17■□□□□ 0.82
HDDC2-201ENST00000318787 PUS3Q9BZE2 481 aaKnown RBP20.17■□□□□ 0.82
HDDC2-201ENST00000318787 ZNF408Q9H9D4 720 aa20.17■□□□□ 0.82
HDDC2-201ENST00000318787 ABT1Q9ULW3 272 aaKnown RBP20.17■□□□□ 0.82
HDDC2-201ENST00000318787 EGFRP00533 1210 aa20.16■□□□□ 0.82
HDDC2-201ENST00000318787 C1QBPQ07021 282 aaKnown RBP20.16■□□□□ 0.82
HDDC2-201ENST00000318787 KIF4BQ2VIQ3 1234 aa20.16■□□□□ 0.82
HDDC2-201ENST00000318787 KLHDC4Q8TBB5 520 aa20.16■□□□□ 0.82
HDDC2-201ENST00000318787 GLIS2Q9BZE0 524 aaPredicted RBP20.16■□□□□ 0.82
HDDC2-201ENST00000318787 BRPF1P55201 1214 aaPredicted RBP20.14■□□□□ 0.81
HDDC2-201ENST00000318787 RABL6Q3YEC7 729 aaPredicted RBP20.14■□□□□ 0.81
HDDC2-201ENST00000318787 PAXIP1Q6ZW49 1069 aaPredicted RBP20.14■□□□□ 0.81
HDDC2-201ENST00000318787 AGBL3Q8NEM8 1001 aa20.14■□□□□ 0.81
HDDC2-201ENST00000318787 CLUAP1Q96AJ1 413 aa20.14■□□□□ 0.81
HDDC2-201ENST00000318787 ZBED9Q6R2W3 1325 aa20.14■□□□□ 0.81
HDDC2-201ENST00000318787 IPO8O15397 1037 aaKnown RBP20.13■□□□□ 0.81
HDDC2-201ENST00000318787 GTF2IP78347 998 aa20.13■□□□□ 0.81
HDDC2-201ENST00000318787 LRRC24Q50LG9 513 aa20.13■□□□□ 0.81
HDDC2-201ENST00000318787 METTL24Q5JXM2 366 aa20.13■□□□□ 0.81
HDDC2-201ENST00000318787 TTLL5Q6EMB2 1281 aa20.13■□□□□ 0.81
HDDC2-201ENST00000318787 ZNF804AQ7Z570 1209 aa20.13■□□□□ 0.81
HDDC2-201ENST00000318787 TNNQ9UQP3 1299 aa20.13■□□□□ 0.81
HDDC2-201ENST00000318787 USP17L8P0C7I0 530 aa20.12■□□□□ 0.81
HDDC2-201ENST00000318787 DCPSQ96C86 337 aaKnown RBP20.12■□□□□ 0.81
HDDC2-201ENST00000318787 CD209Q9NNX6 404 aa20.12■□□□□ 0.81
HDDC2-201ENST00000318787 JAG2Q9Y219 1238 aa20.12■□□□□ 0.81
HDDC2-201ENST00000318787 LRRFIP2Q9Y608 721 aaKnown RBP20.12■□□□□ 0.81
HDDC2-201ENST00000318787 GRM1Q13255 1194 aa20.11■□□□□ 0.81
HDDC2-201ENST00000318787 DACT2Q5SW24 774 aa20.11■□□□□ 0.81
HDDC2-201ENST00000318787 STRIP1Q5VSL9 837 aa20.11■□□□□ 0.81
HDDC2-201ENST00000318787 CDC37L1Q7L3B6 337 aa20.11■□□□□ 0.81
HDDC2-201ENST00000318787 USP48Q86UV5 1035 aa20.11■□□□□ 0.81
HDDC2-201ENST00000318787 ZC3H15Q8WU90 426 aaKnown RBP20.11■□□□□ 0.81
HDDC2-201ENST00000318787 MEIS3Q99687 375 aa20.11■□□□□ 0.81
HDDC2-201ENST00000318787 GGA3Q9NZ52 723 aa20.11■□□□□ 0.81
HDDC2-201ENST00000318787 MROH5Q6ZUA9 1318 aa20.11■□□□□ 0.81
HDDC2-201ENST00000318787 CELF2O95319 508 aaKnown RBP20.1■□□□□ 0.81
HDDC2-201ENST00000318787 TRIM27P14373 513 aa20.1■□□□□ 0.81
HDDC2-201ENST00000318787 ATF7IPQ6VMQ6 1270 aa20.1■□□□□ 0.81
HDDC2-201ENST00000318787 KRT26Q7Z3Y9 468 aa20.1■□□□□ 0.81
HDDC2-201ENST00000318787 OGFOD1Q8N543 542 aa20.1■□□□□ 0.81
HDDC2-201ENST00000318787 ARHGAP45Q92619 1136 aa20.1■□□□□ 0.81
HDDC2-201ENST00000318787 SIL1Q9H173 461 aa20.1■□□□□ 0.81
HDDC2-201ENST00000318787 MYOZ2Q9NPC6 264 aa20.1■□□□□ 0.81
HDDC2-201ENST00000318787 ASTN2O75129 1339 aaPredicted RBP20.1■□□□□ 0.81
HDDC2-201ENST00000318787 MYH13Q9UKX3 1938 aa20.1■□□□□ 0.81
HDDC2-201ENST00000318787 CNTNAP1P78357 1384 aa20.09■□□□□ 0.81
HDDC2-201ENST00000318787 MYO3BQ8WXR4 1341 aa20.09■□□□□ 0.81
HDDC2-201ENST00000318787 GYG1P46976 350 aa20.09■□□□□ 0.81
HDDC2-201ENST00000318787 DLK2Q6UY11 383 aa20.09■□□□□ 0.81
HDDC2-201ENST00000318787 KIAA0825Q8IV33 1275 aa20.09■□□□□ 0.81
HDDC2-201ENST00000318787 RIPOR2Q9Y4F9 1068 aa20.09■□□□□ 0.81
HDDC2-201ENST00000318787 ADM5C9JUS6 153 aa20.08■□□□□ 0.81
HDDC2-201ENST00000318787 SCARF1Q14162 830 aa20.08■□□□□ 0.81
HDDC2-201ENST00000318787 VPS37DQ86XT2 251 aa20.08■□□□□ 0.81
HDDC2-201ENST00000318787 PGAP2Q9UHJ9 254 aa20.08■□□□□ 0.81
HDDC2-201ENST00000318787 HDAC5Q9UQL6 1122 aa20.08■□□□□ 0.81
HDDC2-201ENST00000318787 ZNF609O15014 1411 aa20.08■□□□□ 0.8
HDDC2-201ENST00000318787 IRS2Q9Y4H2 1338 aa20.08■□□□□ 0.8
HDDC2-201ENST00000318787 F8W031 263 aaPredicted RBP20.08■□□□□ 0.8
HDDC2-201ENST00000318787 ZNF280AP59817 542 aaPredicted RBP20.08■□□□□ 0.8
HDDC2-201ENST00000318787 UBE4AQ14139 1066 aa20.08■□□□□ 0.8
HDDC2-201ENST00000318787 DEFB115Q30KQ5 88 aa20.08■□□□□ 0.8
HDDC2-201ENST00000318787 ANGEL2Q5VTE6 544 aaKnown RBP20.08■□□□□ 0.8
HDDC2-201ENST00000318787 ZKSCAN2Q63HK3 967 aa20.08■□□□□ 0.8
HDDC2-201ENST00000318787 INTS3Q68E01 1043 aaKnown RBP20.08■□□□□ 0.8
HDDC2-201ENST00000318787 SULF1Q8IWU6 871 aa20.08■□□□□ 0.8
HDDC2-201ENST00000318787 GMLQ99445 158 aa20.08■□□□□ 0.8
HDDC2-201ENST00000318787 CST9Q5W186 159 aa20.07■□□□□ 0.8
HDDC2-201ENST00000318787 C15orf52Q6ZUT6 534 aaKnown RBP20.07■□□□□ 0.8
HDDC2-201ENST00000318787 HDAC9Q9UKV0 1011 aa20.07■□□□□ 0.8
HDDC2-201ENST00000318787 SCAF8Q9UPN6 1271 aaKnown RBP20.07■□□□□ 0.8
HDDC2-201ENST00000318787 IQSEC3Q9UPP2 1182 aaPredicted RBP20.07■□□□□ 0.8
HDDC2-201ENST00000318787 FRAT2O75474 233 aaPredicted RBP20.06■□□□□ 0.8
HDDC2-201ENST00000318787 SASH1O94885 1247 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms