RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 FGFR2P21802 821 aa22.35■■□□□ 1.17
HMGA1-201ENST00000311487 BCAMP50895 628 aa22.35■■□□□ 1.17
HMGA1-201ENST00000311487 WASHC4Q2M389 1173 aa22.35■■□□□ 1.17
HMGA1-201ENST00000311487 CENPQQ7L2Z9 268 aaPredicted RBP22.35■■□□□ 1.17
HMGA1-201ENST00000311487 CLASRPQ8N2M8 674 aaKnown RBP22.35■■□□□ 1.17
HMGA1-201ENST00000311487 XAGE2Q96GT9 111 aa22.35■■□□□ 1.17
HMGA1-201ENST00000311487 SNED1Q8TER0 1413 aa22.35■■□□□ 1.17
HMGA1-201ENST00000311487 A0A1B0GUL6 1792 aa22.35■■□□□ 1.17
HMGA1-201ENST00000311487 ATP2B4P23634 1241 aa22.35■■□□□ 1.17
HMGA1-201ENST00000311487 NUCB1Q02818 461 aa22.35■■□□□ 1.17
HMGA1-201ENST00000311487 CHD1LQ86WJ1 897 aa22.35■■□□□ 1.17
HMGA1-201ENST00000311487 TAOK3Q9H2K8 898 aa22.35■■□□□ 1.17
HMGA1-201ENST00000311487 ZBTB47Q9UFB7 747 aaPredicted RBP22.35■■□□□ 1.17
HMGA1-201ENST00000311487 LPIN2Q92539 896 aa22.34■■□□□ 1.17
HMGA1-201ENST00000311487 DBNLQ9UJU6 430 aaKnown RBP22.34■■□□□ 1.17
HMGA1-201ENST00000311487 JAG2Q9Y219 1238 aa22.34■■□□□ 1.17
HMGA1-201ENST00000311487 AKAP2Q9Y2D5 859 aa22.34■■□□□ 1.17
HMGA1-201ENST00000311487 LEMD3Q9Y2U8 911 aa22.34■■□□□ 1.17
HMGA1-201ENST00000311487 IFIT2P09913 472 aaKnown RBP22.33■■□□□ 1.17
HMGA1-201ENST00000311487 SLC5A1P13866 664 aa22.33■■□□□ 1.17
HMGA1-201ENST00000311487 FKBP4Q02790 459 aaKnown RBP eCLIP22.33■■□□□ 1.17
HMGA1-201ENST00000311487 CC2D2BQ6DHV5 1058 aa22.33■■□□□ 1.17
HMGA1-201ENST00000311487 DBNDD1Q9H9R9 158 aa22.33■■□□□ 1.17
HMGA1-201ENST00000311487 PPIP5K2O43314 1243 aa22.33■■□□□ 1.16
HMGA1-201ENST00000311487 UBE4AQ14139 1066 aa22.33■■□□□ 1.16
HMGA1-201ENST00000311487 GORABQ5T7V8 394 aa22.33■■□□□ 1.16
HMGA1-201ENST00000311487 SOGA3Q5TF21 947 aa22.33■■□□□ 1.16
HMGA1-201ENST00000311487 ZC3H12CQ9C0D7 883 aaKnown RBP22.33■■□□□ 1.16
HMGA1-201ENST00000311487 ZNF609O15014 1411 aa22.32■■□□□ 1.16
HMGA1-201ENST00000311487 IFIT1P09914 478 aaKnown RBP22.32■■□□□ 1.16
HMGA1-201ENST00000311487 FAM84BQ96KN1 310 aaPredicted RBP22.32■■□□□ 1.16
HMGA1-201ENST00000311487 LTBP1Q14766 1721 aa22.32■■□□□ 1.16
HMGA1-201ENST00000311487 ARFGEF1Q9Y6D6 1849 aa22.32■■□□□ 1.16
HMGA1-201ENST00000311487 PHKA1P46020 1223 aa22.31■■□□□ 1.16
HMGA1-201ENST00000311487 KCNQ5Q9NR82 932 aa22.31■■□□□ 1.16
HMGA1-201ENST00000311487 NDUFB9Q9Y6M9 179 aa22.31■■□□□ 1.16
HMGA1-201ENST00000311487 PDE4AP27815 886 aa22.31■■□□□ 1.16
HMGA1-201ENST00000311487 VPS37DQ86XT2 251 aa22.31■■□□□ 1.16
HMGA1-201ENST00000311487 PSMD1Q99460 953 aa22.31■■□□□ 1.16
HMGA1-201ENST00000311487 RTFDC1Q9BY42 306 aaPredicted RBP22.31■■□□□ 1.16
HMGA1-201ENST00000311487 LARGE2Q8N3Y3 721 aa22.3■■□□□ 1.16
HMGA1-201ENST00000311487 IRS2Q9Y4H2 1338 aa22.3■■□□□ 1.16
HMGA1-201ENST00000311487 G3V3G9 751 aa22.29■■□□□ 1.16
HMGA1-201ENST00000311487 FER1L6Q2WGJ9 1857 aa22.29■■□□□ 1.16
HMGA1-201ENST00000311487 DCAF8Q5TAQ9 597 aa22.29■■□□□ 1.16
HMGA1-201ENST00000311487 CCDC102BQ68D86 513 aa22.29■■□□□ 1.16
HMGA1-201ENST00000311487 PI16Q6UXB8 463 aa22.29■■□□□ 1.16
HMGA1-201ENST00000311487 COL4A5P29400 1685 aa22.28■■□□□ 1.16
HMGA1-201ENST00000311487 IARSP41252 1262 aaKnown RBP22.28■■□□□ 1.16
HMGA1-201ENST00000311487 RGS3P49796 1198 aa22.28■■□□□ 1.16
HMGA1-201ENST00000311487 GPR108Q9NPR9 543 aa22.28■■□□□ 1.16
HMGA1-201ENST00000311487 HIBADHP31937 336 aaKnown RBP22.27■■□□□ 1.16
HMGA1-201ENST00000311487 SCARF1Q14162 830 aa22.27■■□□□ 1.16
HMGA1-201ENST00000311487 CAVIN4Q5BKX8 364 aa22.27■■□□□ 1.16
HMGA1-201ENST00000311487 FBXW7Q969H0 707 aa22.27■■□□□ 1.16
HMGA1-201ENST00000311487 EYA3Q99504 573 aa22.27■■□□□ 1.16
HMGA1-201ENST00000311487 SNRKQ9NRH2 765 aa22.27■■□□□ 1.16
HMGA1-201ENST00000311487 KIAA2012Q0VF49 1180 aa22.27■■□□□ 1.16
HMGA1-201ENST00000311487 SUPT20HQ8NEM7 779 aa22.27■■□□□ 1.16
HMGA1-201ENST00000311487 FRAT2O75474 233 aaPredicted RBP22.26■■□□□ 1.15
HMGA1-201ENST00000311487 MED23Q9ULK4 1368 aa22.26■■□□□ 1.15
HMGA1-201ENST00000311487 MAP4K4O95819 1239 aaPredicted RBP22.25■■□□□ 1.15
HMGA1-201ENST00000311487 TTC39AQ5SRH9 613 aa22.25■■□□□ 1.15
HMGA1-201ENST00000311487 ECE2O60344 883 aa22.25■■□□□ 1.15
HMGA1-201ENST00000311487 GRIPAP1Q4V328 841 aa22.25■■□□□ 1.15
HMGA1-201ENST00000311487 ZNF804AQ7Z570 1209 aa22.25■■□□□ 1.15
HMGA1-201ENST00000311487 FBXO33Q7Z6M2 555 aa22.25■■□□□ 1.15
HMGA1-201ENST00000311487 CD209Q9NNX6 404 aa22.25■■□□□ 1.15
HMGA1-201ENST00000311487 CHAF1AQ13111 956 aaPredicted RBP22.24■■□□□ 1.15
HMGA1-201ENST00000311487 CCDC158Q5M9N0 1113 aa22.24■■□□□ 1.15
HMGA1-201ENST00000311487 MXD3Q9BW11 206 aa22.24■■□□□ 1.15
HMGA1-201ENST00000311487 BOLA2Q9H3K6 86 aa22.24■■□□□ 1.15
HMGA1-201ENST00000311487 RNF181Q9P0P0 153 aa22.24■■□□□ 1.15
HMGA1-201ENST00000311487 CCDC88AQ3V6T2 1871 aa22.24■■□□□ 1.15
HMGA1-201ENST00000311487 YDJCA8MPS7 323 aa22.23■■□□□ 1.15
HMGA1-201ENST00000311487 GRIN3BO60391 1043 aa22.23■■□□□ 1.15
HMGA1-201ENST00000311487 MX1P20591 662 aa22.23■■□□□ 1.15
HMGA1-201ENST00000311487 PLEKHM2Q8IWE5 1019 aa22.23■■□□□ 1.15
HMGA1-201ENST00000311487 RBM19Q9Y4C8 960 aaKnown RBP22.23■■□□□ 1.15
HMGA1-201ENST00000311487 RAD17O75943 681 aa22.23■■□□□ 1.15
HMGA1-201ENST00000311487 C9orf131Q5VYM1 1079 aa22.23■■□□□ 1.15
HMGA1-201ENST00000311487 EDC3Q96F86 508 aaKnown RBP22.23■■□□□ 1.15
HMGA1-201ENST00000311487 LMNB1P20700 586 aa22.22■■□□□ 1.15
HMGA1-201ENST00000311487 MCAMP43121 646 aa22.22■■□□□ 1.15
HMGA1-201ENST00000311487 RASGRF1Q13972 1273 aa22.22■■□□□ 1.15
HMGA1-201ENST00000311487 PDE1AP54750 535 aa22.21■■□□□ 1.15
HMGA1-201ENST00000311487 NIM1KQ8IY84 436 aa22.21■■□□□ 1.15
HMGA1-201ENST00000311487 JDP2Q8WYK2 163 aa22.21■■□□□ 1.15
HMGA1-201ENST00000311487 DNAJC2Q99543 621 aaKnown RBP22.21■■□□□ 1.15
HMGA1-201ENST00000311487 LTBP3Q9NS15 1303 aa22.21■■□□□ 1.15
HMGA1-201ENST00000311487 GTF2IP78347 998 aa22.21■■□□□ 1.15
HMGA1-201ENST00000311487 TBC1D9Q6ZT07 1266 aa22.21■■□□□ 1.15
HMGA1-201ENST00000311487 C15orf52Q6ZUT6 534 aaKnown RBP22.21■■□□□ 1.15
HMGA1-201ENST00000311487 COA1Q9GZY4 146 aa22.21■■□□□ 1.15
HMGA1-201ENST00000311487 ECHDC1Q9NTX5 307 aa22.21■■□□□ 1.15
HMGA1-201ENST00000311487 CHD4Q14839 1912 aa22.21■■□□□ 1.15
HMGA1-201ENST00000311487 SALL3Q9BXA9 1300 aa22.21■■□□□ 1.15
HMGA1-201ENST00000311487 HMG20BQ9P0W2 317 aa22.19■■□□□ 1.14
HMGA1-201ENST00000311487 COL1A1P02452 1464 aaPredicted RBP22.19■■□□□ 1.14
HMGA1-201ENST00000311487 DCAF8L1A6NGE4 600 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms