RNA–Protein interactions for RNA: ENST00000308177.4

PCDHGC3-201, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGC3, Length 4,725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-201ENST00000308177 PTCH1Q13635 1447 aa13.22□□□□□ -0.29
PCDHGC3-201ENST00000308177 MAGEB6P1A0A0J9YX57 407 aa13.22□□□□□ -0.29
PCDHGC3-201ENST00000308177 PUM3Q15397 648 aaKnown RBP13.22□□□□□ -0.29
PCDHGC3-201ENST00000308177 CCDC87Q9NVE4 849 aa13.22□□□□□ -0.29
PCDHGC3-201ENST00000308177 ARHGEF40Q8TER5 1519 aa13.22□□□□□ -0.29
PCDHGC3-201ENST00000308177 KLHL10Q6JEL2 608 aa13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 MTERF4Q7Z6M4 381 aaKnown RBP13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 KCNG4Q8TDN1 519 aa13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 OSBPL3Q9H4L5 887 aa13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 STAP2Q9UGK3 403 aa13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 STX8Q9UNK0 236 aa13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 SFPQP23246 707 aaKnown RBP eCLIP13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 IFIT1BQ5T764 474 aaKnown RBP13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 APPBP2Q92624 585 aa13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 ZNF219Q9P2Y4 722 aaPredicted RBP13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 NEXMIFQ5QGS0 1516 aa13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 PRAMEF22A3QJZ6 481 aa13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 EDC3Q96F86 508 aaKnown RBP13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 CLIP2Q9UDT6 1046 aa13.21□□□□□ -0.29
PCDHGC3-201ENST00000308177 PTPRMP28827 1452 aa13.21□□□□□ -0.3
PCDHGC3-201ENST00000308177 MAP7D2Q96T17 732 aa13.21□□□□□ -0.3
PCDHGC3-201ENST00000308177 CARD10Q9BWT7 1032 aa13.21□□□□□ -0.3
PCDHGC3-201ENST00000308177 GNPATO15228 680 aa13.2□□□□□ -0.3
PCDHGC3-201ENST00000308177 CCDC96Q2M329 555 aa13.2□□□□□ -0.3
PCDHGC3-201ENST00000308177 CCDC102BQ68D86 513 aa13.2□□□□□ -0.3
PCDHGC3-201ENST00000308177 MBD4O95243 580 aa13.2□□□□□ -0.3
PCDHGC3-201ENST00000308177 MRPS27Q92552 414 aaKnown RBP13.2□□□□□ -0.3
PCDHGC3-201ENST00000308177 ZNF76P36508 570 aa13.19□□□□□ -0.3
PCDHGC3-201ENST00000308177 TM6SF1Q9BZW5 370 aa13.19□□□□□ -0.3
PCDHGC3-201ENST00000308177 ANKRD2Q9GZV1 360 aa13.19□□□□□ -0.3
PCDHGC3-201ENST00000308177 COPRSQ9NQ92 184 aa13.19□□□□□ -0.3
PCDHGC3-201ENST00000308177 NSFL1CQ9UNZ2 370 aaKnown RBP13.19□□□□□ -0.3
PCDHGC3-201ENST00000308177 SSH2Q76I76 1423 aa13.19□□□□□ -0.3
PCDHGC3-201ENST00000308177 WDR17Q8IZU2 1322 aa13.19□□□□□ -0.3
PCDHGC3-201ENST00000308177 GPAA1O43292 621 aa13.19□□□□□ -0.3
PCDHGC3-201ENST00000308177 SYKP43405 635 aa13.19□□□□□ -0.3
PCDHGC3-201ENST00000308177 FAM177A1Q8N128 213 aaPredicted RBP13.19□□□□□ -0.3
PCDHGC3-201ENST00000308177 ZNF622Q969S3 477 aaKnown RBP eCLIP13.19□□□□□ -0.3
PCDHGC3-201ENST00000308177 PALD1Q9ULE6 856 aa13.19□□□□□ -0.3
PCDHGC3-201ENST00000308177 CCDC12Q8WUD4 166 aaPredicted RBP13.18□□□□□ -0.3
PCDHGC3-201ENST00000308177 TANGO6Q9C0B7 1094 aa13.18□□□□□ -0.3
PCDHGC3-201ENST00000308177 FAM98CQ17RN3 349 aaKnown RBP13.18□□□□□ -0.3
PCDHGC3-201ENST00000308177 LPIN2Q92539 896 aa13.18□□□□□ -0.3
PCDHGC3-201ENST00000308177 FAM200AQ8TCP9 573 aa13.18□□□□□ -0.3
PCDHGC3-201ENST00000308177 VAT1LQ9HCJ6 419 aa13.18□□□□□ -0.3
PCDHGC3-201ENST00000308177 ZNF804AQ7Z570 1209 aa13.18□□□□□ -0.3
PCDHGC3-201ENST00000308177 CCNL1Q9UK58 526 aaPredicted RBP13.18□□□□□ -0.3
PCDHGC3-201ENST00000308177 UQCRHLA0A096LP55 91 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 UQCRHP07919 91 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 USP31Q70CQ4 1352 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 TSPY3P0CV98 308 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 TSPY8P0CW00 308 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 CAGE1Q8TC20 777 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 RAB34Q9BZG1 259 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 LRRC7Q96NW7 1537 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 SPTLC2O15270 562 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 TAF5LO75529 589 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 MARCKSP29966 332 aaPredicted RBP13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 ZAP70P43403 619 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 RBM10P98175 930 aaKnown RBP13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 TRAPPC3LQ5T215 181 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 UNC5CLQ8IV45 518 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 A0A0D9SFI3 127 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 RXRAP19793 462 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 PTH1RQ03431 593 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 ANO6Q4KMQ2 910 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 ISM2Q6H9L7 571 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 DENND2AQ9ULE3 1009 aa13.17□□□□□ -0.3
PCDHGC3-201ENST00000308177 ADGRL3Q9HAR2 1447 aa13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 HLA-DOAP06340 250 aa13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 TOP1P11387 765 aaKnown RBP13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 CCDC178Q5BJE1 867 aa13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 AGLP35573 1532 aa13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 KANK3Q6NY19 840 aa13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 MCM9Q9NXL9 1143 aa13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 ASAP1Q9ULH1 1129 aa13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 NRXN1Q9ULB1 1477 aa13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 CLTCQ00610 1675 aaKnown RBP13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 EIF5P55010 431 aaKnown RBP13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 ZBTB38Q8NAP3 1195 aaPredicted RBP13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 DEF6Q9H4E7 631 aa13.16□□□□□ -0.3
PCDHGC3-201ENST00000308177 B4E1Z4 1266 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 PCCAP05165 728 aaPredicted RBP13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 UBA7P41226 1012 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 AXIN2Q9Y2T1 843 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 CDC42BPGQ6DT37 1551 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 DLC1Q96QB1 1528 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 GNAQP50148 359 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 TMEM266Q2M3C6 531 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 LLPHQ9BRT6 129 aaKnown RBP13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 TCP11L1Q9NUJ3 509 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 KIAA1210Q9ULL0 1709 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 BMP15O95972 392 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 CTSWP56202 376 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 BRAPQ7Z569 592 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 MROH5Q6ZUA9 1318 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 ARMT1Q9H993 441 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 JAG2Q9Y219 1238 aa13.15□□□□□ -0.3
PCDHGC3-201ENST00000308177 NEMFO60524 1076 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 CALM1P0DP23 149 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms