RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 SLC10A5Q5PT55 438 aa14.32□□□□□ -0.12
TRIM40-205ENST00000307859 SMIM5Q71RC9 77 aa14.32□□□□□ -0.12
TRIM40-205ENST00000307859 DDX46Q7L014 1031 aaKnown RBP14.32□□□□□ -0.12
TRIM40-205ENST00000307859 SRP68Q9UHB9 627 aaKnown RBP14.32□□□□□ -0.12
TRIM40-205ENST00000307859 ZPR1O75312 459 aa14.31□□□□□ -0.12
TRIM40-205ENST00000307859 FGFR2P21802 821 aa14.31□□□□□ -0.12
TRIM40-205ENST00000307859 NBR1Q14596 966 aa14.31□□□□□ -0.12
TRIM40-205ENST00000307859 SF3B3Q15393 1217 aaKnown RBP14.31□□□□□ -0.12
TRIM40-205ENST00000307859 ERFEQ4G0M1 354 aa14.31□□□□□ -0.12
TRIM40-205ENST00000307859 SPRYD3Q8NCJ5 442 aa14.31□□□□□ -0.12
TRIM40-205ENST00000307859 ARHGEF1Q92888 912 aaKnown RBP14.31□□□□□ -0.12
TRIM40-205ENST00000307859 MAP4K1Q92918 833 aa14.31□□□□□ -0.12
TRIM40-205ENST00000307859 ZNF512BQ96KM6 892 aaPredicted RBP14.31□□□□□ -0.12
TRIM40-205ENST00000307859 NYXQ9GZU5 481 aa14.31□□□□□ -0.12
TRIM40-205ENST00000307859 CHMP5Q9NZZ3 219 aa14.31□□□□□ -0.12
TRIM40-205ENST00000307859 SNX14Q9Y5W7 946 aa14.31□□□□□ -0.12
TRIM40-205ENST00000307859 MYH13Q9UKX3 1938 aa14.31□□□□□ -0.12
TRIM40-205ENST00000307859 GOLIM4O00461 696 aa14.3□□□□□ -0.12
TRIM40-205ENST00000307859 ADRA2BP18089 450 aa14.3□□□□□ -0.12
TRIM40-205ENST00000307859 MCM2P49736 904 aa14.3□□□□□ -0.12
TRIM40-205ENST00000307859 NEK4P51957 841 aa14.3□□□□□ -0.12
TRIM40-205ENST00000307859 NECTIN1Q15223 517 aa14.3□□□□□ -0.12
TRIM40-205ENST00000307859 TTC39AQ5SRH9 613 aa14.3□□□□□ -0.12
TRIM40-205ENST00000307859 SEC31BQ9NQW1 1179 aa14.3□□□□□ -0.12
TRIM40-205ENST00000307859 PUM3Q15397 648 aaKnown RBP14.3□□□□□ -0.12
TRIM40-205ENST00000307859 NFKBIBQ15653 356 aa14.3□□□□□ -0.12
TRIM40-205ENST00000307859 GORABQ5T7V8 394 aa14.3□□□□□ -0.12
TRIM40-205ENST00000307859 ZNF589Q86UQ0 364 aaPredicted RBP14.3□□□□□ -0.12
TRIM40-205ENST00000307859 CIZ1Q9ULV3 898 aaPredicted RBP14.3□□□□□ -0.12
TRIM40-205ENST00000307859 IGHMBP2P38935 993 aaKnown RBP14.29□□□□□ -0.12
TRIM40-205ENST00000307859 COL23A1Q86Y22 540 aaPredicted RBP14.29□□□□□ -0.12
TRIM40-205ENST00000307859 RASEFQ8IZ41 740 aa14.29□□□□□ -0.12
TRIM40-205ENST00000307859 SETDB2Q96T68 719 aa14.29□□□□□ -0.12
TRIM40-205ENST00000307859 MPHOSPH8Q99549 860 aa14.29□□□□□ -0.12
TRIM40-205ENST00000307859 RBM8AQ9Y5S9 174 aaKnown RBP14.29□□□□□ -0.12
TRIM40-205ENST00000307859 TAF5LO75529 589 aa14.28□□□□□ -0.12
TRIM40-205ENST00000307859 HMGB2P26583 209 aaKnown RBP14.28□□□□□ -0.12
TRIM40-205ENST00000307859 SCARF1Q14162 830 aa14.28□□□□□ -0.12
TRIM40-205ENST00000307859 MCMDC2Q4G0Z9 681 aa14.28□□□□□ -0.12
TRIM40-205ENST00000307859 TRAPPC3LQ5T215 181 aa14.28□□□□□ -0.12
TRIM40-205ENST00000307859 BICDL1Q6ZP65 573 aa14.28□□□□□ -0.12
TRIM40-205ENST00000307859 C3orf67Q6ZVT6 689 aa14.28□□□□□ -0.12
TRIM40-205ENST00000307859 RBM46Q8TBY0 533 aaKnown RBP14.28□□□□□ -0.12
TRIM40-205ENST00000307859 LPIN2Q92539 896 aa14.28□□□□□ -0.12
TRIM40-205ENST00000307859 CDC5LQ99459 802 aaKnown RBP14.28□□□□□ -0.12
TRIM40-205ENST00000307859 HELLSQ9NRZ9 838 aa14.28□□□□□ -0.12
TRIM40-205ENST00000307859 PCDH10Q9P2E7 1040 aa14.28□□□□□ -0.12
TRIM40-205ENST00000307859 ARID4AP29374 1257 aaPredicted RBP14.27□□□□□ -0.12
TRIM40-205ENST00000307859 RFC4P35249 363 aa14.27□□□□□ -0.12
TRIM40-205ENST00000307859 ZMYM1Q5SVZ6 1142 aa14.27□□□□□ -0.12
TRIM40-205ENST00000307859 PRPF40BQ6NWY9 871 aaKnown RBP14.27□□□□□ -0.12
TRIM40-205ENST00000307859 WDR90Q96KV7 1748 aa14.27□□□□□ -0.12
TRIM40-205ENST00000307859 TM6SF1Q9BZW5 370 aa14.27□□□□□ -0.12
TRIM40-205ENST00000307859 CARMIL3Q8ND23 1372 aa14.27□□□□□ -0.13
TRIM40-205ENST00000307859 RPAP1Q9BWH6 1393 aaPredicted RBP14.27□□□□□ -0.13
TRIM40-205ENST00000307859 CHGBP05060 677 aa14.26□□□□□ -0.13
TRIM40-205ENST00000307859 HSP90AA1P07900 732 aaKnown RBP14.26□□□□□ -0.13
TRIM40-205ENST00000307859 SSFA2P28290 1259 aa14.26□□□□□ -0.13
TRIM40-205ENST00000307859 CREB3L3Q68CJ9 461 aa14.26□□□□□ -0.13
TRIM40-205ENST00000307859 NBPF5PQ86XG9 351 aaPredicted RBP14.26□□□□□ -0.13
TRIM40-205ENST00000307859 UPF3BQ9BZI7 483 aaKnown RBP14.26□□□□□ -0.13
TRIM40-205ENST00000307859 RNF113AO15541 343 aaKnown RBP14.26□□□□□ -0.13
TRIM40-205ENST00000307859 PHF14O94880 888 aa14.26□□□□□ -0.13
TRIM40-205ENST00000307859 UQCRFS1P1P0C7P4 283 aa14.26□□□□□ -0.13
TRIM40-205ENST00000307859 SLC5A1P13866 664 aa14.26□□□□□ -0.13
TRIM40-205ENST00000307859 MCAMP43121 646 aa14.26□□□□□ -0.13
TRIM40-205ENST00000307859 ZAP70P43403 619 aa14.26□□□□□ -0.13
TRIM40-205ENST00000307859 FKBP4Q02790 459 aaKnown RBP eCLIP14.26□□□□□ -0.13
TRIM40-205ENST00000307859 LRRFIP1Q32MZ4 808 aaKnown RBP14.26□□□□□ -0.13
TRIM40-205ENST00000307859 TPTE2Q6XPS3 522 aa14.26□□□□□ -0.13
TRIM40-205ENST00000307859 FLAD1Q8NFF5 587 aa14.26□□□□□ -0.13
TRIM40-205ENST00000307859 TTC14Q96N46 770 aa14.26□□□□□ -0.13
TRIM40-205ENST00000307859 HMG20BQ9P0W2 317 aa14.26□□□□□ -0.13
TRIM40-205ENST00000307859 GOLGB1Q14789 3259 aaKnown RBP14.26□□□□□ -0.13
TRIM40-205ENST00000307859 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.25□□□□□ -0.13
TRIM40-205ENST00000307859 SLC27A2O14975 620 aa14.25□□□□□ -0.13
TRIM40-205ENST00000307859 ZFYP08048 801 aaPredicted RBP14.25□□□□□ -0.13
TRIM40-205ENST00000307859 ZKSCAN1P17029 563 aaPredicted RBP14.25□□□□□ -0.13
TRIM40-205ENST00000307859 GTF2E1P29083 439 aaPredicted RBP14.25□□□□□ -0.13
TRIM40-205ENST00000307859 PHKA1P46020 1223 aa14.25□□□□□ -0.13
TRIM40-205ENST00000307859 FSTL1Q12841 308 aa14.25□□□□□ -0.13
TRIM40-205ENST00000307859 TSGA10IPQ3SY00 556 aa14.25□□□□□ -0.13
TRIM40-205ENST00000307859 CCDC102BQ68D86 513 aa14.25□□□□□ -0.13
TRIM40-205ENST00000307859 ANKRD18AQ8IVF6 992 aa14.25□□□□□ -0.13
TRIM40-205ENST00000307859 HELBQ8NG08 1087 aaPredicted RBP14.25□□□□□ -0.13
TRIM40-205ENST00000307859 TMX3Q96JJ7 454 aa14.25□□□□□ -0.13
TRIM40-205ENST00000307859 SEC62Q99442 399 aaKnown RBP14.25□□□□□ -0.13
TRIM40-205ENST00000307859 KCNJ4P48050 445 aa14.24□□□□□ -0.13
TRIM40-205ENST00000307859 CHRNDQ07001 517 aa14.24□□□□□ -0.13
TRIM40-205ENST00000307859 CUL4AQ13619 759 aa14.24□□□□□ -0.13
TRIM40-205ENST00000307859 RNF20Q5VTR2 975 aa14.24□□□□□ -0.13
TRIM40-205ENST00000307859 CCDC129Q6ZRS4 1044 aa14.24□□□□□ -0.13
TRIM40-205ENST00000307859 ZSWIM6Q9HCJ5 1215 aa14.24□□□□□ -0.13
TRIM40-205ENST00000307859 BSDC1Q9NW68 430 aaPredicted RBP14.24□□□□□ -0.13
TRIM40-205ENST00000307859 WWC3Q9ULE0 1092 aa14.24□□□□□ -0.13
TRIM40-205ENST00000307859 U3KPZ7 1027 aaPredicted RBP14.24□□□□□ -0.13
TRIM40-205ENST00000307859 MAST3O60307 1309 aa14.24□□□□□ -0.13
TRIM40-205ENST00000307859 FRAT2O75474 233 aaPredicted RBP14.23□□□□□ -0.13
TRIM40-205ENST00000307859 NFIXQ14938 502 aa14.23□□□□□ -0.13
TRIM40-205ENST00000307859 TTF1Q15361 905 aaPredicted RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms