RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 INTS5Q6P9B9 1019 aaKnown RBP12.77□□□□□ -0.37
LSM3-201ENST00000306024 OTUD7AQ8TE49 926 aaPredicted RBP12.77□□□□□ -0.37
LSM3-201ENST00000306024 TMX1Q9H3N1 280 aa12.77□□□□□ -0.37
LSM3-201ENST00000306024 STK32BQ9NY57 414 aa12.77□□□□□ -0.37
LSM3-201ENST00000306024 BECN2A8MW95 431 aa12.77□□□□□ -0.37
LSM3-201ENST00000306024 CNTROBQ8N137 903 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 SYNE4Q8N205 404 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 CDC5LQ99459 802 aaKnown RBP12.76□□□□□ -0.37
LSM3-201ENST00000306024 GTF2A1P52655 376 aaPredicted RBP12.76□□□□□ -0.37
LSM3-201ENST00000306024 TPM4P67936 248 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 GNL2Q13823 731 aaKnown RBP12.76□□□□□ -0.37
LSM3-201ENST00000306024 BMS1Q14692 1282 aaKnown RBP12.76□□□□□ -0.37
LSM3-201ENST00000306024 EPHA10Q5JZY3 1008 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 CCDC158Q5M9N0 1113 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 TTC22Q5TAA0 569 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 HOMER1Q86YM7 354 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 GTF3C6Q969F1 213 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 BOLA2Q9H3K6 86 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 CNPY2Q9Y2B0 182 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 COL22A1Q8NFW1 1626 aaPredicted RBP12.76□□□□□ -0.37
LSM3-201ENST00000306024 ITGA6P23229 1130 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 CNBD1Q8NA66 436 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 FSD1Q9BTV5 496 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 ISCA1Q9BUE6 129 aa12.76□□□□□ -0.37
LSM3-201ENST00000306024 TRMT1Q9NXH9 659 aaKnown RBP12.76□□□□□ -0.37
LSM3-201ENST00000306024 PPP1R1BQ9UD71 204 aaPredicted RBP12.76□□□□□ -0.37
LSM3-201ENST00000306024 G3V3G9 751 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 H7C1W4 665 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 IL15P40933 162 aaPredicted RBP12.75□□□□□ -0.37
LSM3-201ENST00000306024 PDE1AP54750 535 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 NAA30Q147X3 362 aaPredicted RBP12.75□□□□□ -0.37
LSM3-201ENST00000306024 CAMK4Q16566 473 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 NOM1Q5C9Z4 860 aaKnown RBP12.75□□□□□ -0.37
LSM3-201ENST00000306024 DCAF8Q5TAQ9 597 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 DDX46Q7L014 1031 aaKnown RBP12.75□□□□□ -0.37
LSM3-201ENST00000306024 C10orf67Q8IYJ2 551 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 ARHGEF1Q92888 912 aaKnown RBP12.75□□□□□ -0.37
LSM3-201ENST00000306024 CTNNA3Q9UI47 895 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 RGS12O14924 1447 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 GLRX3O76003 335 aaKnown RBP12.75□□□□□ -0.37
LSM3-201ENST00000306024 SLC27A3Q5K4L6 730 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 TTC39AQ5SRH9 613 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 POTEAQ6S8J7 498 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 MNS1Q8NEH6 495 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 RPGRQ92834 1020 aaKnown RBP12.75□□□□□ -0.37
LSM3-201ENST00000306024 SPTLC3Q9NUV7 552 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 DDX41Q9UJV9 622 aaKnown RBP12.75□□□□□ -0.37
LSM3-201ENST00000306024 AKAP2Q9Y2D5 859 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.75□□□□□ -0.37
LSM3-201ENST00000306024 ABCA3Q99758 1704 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 ST5P78524 1137 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 SUSD4Q5VX71 490 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 ECHDC1Q9NTX5 307 aa12.75□□□□□ -0.37
LSM3-201ENST00000306024 SDSP20132 328 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 UBE2HP62256 183 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 TFCP2Q12800 502 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 FILIP1Q7Z7B0 1213 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 PLEKHM2Q8IWE5 1019 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 HELBQ8NG08 1087 aaPredicted RBP12.74□□□□□ -0.37
LSM3-201ENST00000306024 ANKRD7Q92527 254 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 NARFQ9UHQ1 456 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 RSPH14Q9UHP6 348 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 PLCH1Q4KWH8 1693 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 ATRNO75882 1429 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 EYA2O00167 538 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 CTSWP56202 376 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 EN1Q05925 392 aaPredicted RBP12.74□□□□□ -0.37
LSM3-201ENST00000306024 RC3H1Q5TC82 1133 aaKnown RBP12.74□□□□□ -0.37
LSM3-201ENST00000306024 ANKRD18AQ8IVF6 992 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 KIF18AQ8NI77 898 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 RASSF4Q9H2L5 321 aa12.74□□□□□ -0.37
LSM3-201ENST00000306024 CYP2E1P05181 493 aaPredicted RBP12.73□□□□□ -0.37
LSM3-201ENST00000306024 FKBP4Q02790 459 aaKnown RBP eCLIP12.73□□□□□ -0.37
LSM3-201ENST00000306024 CLEC4GQ6UXB4 293 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 GPATCH11Q8N954 259 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 RUFY2Q8WXA3 655 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 ZDHHC9Q9Y397 364 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 ATP10DQ9P241 1426 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 ONECUT3O60422 494 aaPredicted RBP12.73□□□□□ -0.37
LSM3-201ENST00000306024 BRD1O95696 1058 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 TRIM28Q13263 835 aaKnown RBP12.73□□□□□ -0.37
LSM3-201ENST00000306024 MSL1Q68DK7 614 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 BICD2Q8TD16 824 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 NUP62CLQ9H1M0 184 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 CAMTA2O94983 1202 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 SLFN14P0C7P3 912 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 MAP3K11Q16584 847 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 CLIP2Q9UDT6 1046 aa12.73□□□□□ -0.37
LSM3-201ENST00000306024 LRMPQ12912 555 aa12.72□□□□□ -0.37
LSM3-201ENST00000306024 ELF2Q15723 593 aa12.72□□□□□ -0.37
LSM3-201ENST00000306024 TMCO3Q6UWJ1 677 aa12.72□□□□□ -0.37
LSM3-201ENST00000306024 CKAP2LQ8IYA6 745 aa12.72□□□□□ -0.37
LSM3-201ENST00000306024 TNMDQ9H2S6 317 aa12.72□□□□□ -0.37
LSM3-201ENST00000306024 GREM2Q9H772 168 aa12.72□□□□□ -0.37
LSM3-201ENST00000306024 TOMM22Q9NS69 142 aa12.72□□□□□ -0.37
LSM3-201ENST00000306024 SCN11AQ9UI33 1791 aa12.72□□□□□ -0.37
LSM3-201ENST00000306024 CNTNAP4Q9C0A0 1308 aa12.72□□□□□ -0.37
LSM3-201ENST00000306024 CCAR2Q8N163 923 aaKnown RBP12.72□□□□□ -0.37
LSM3-201ENST00000306024 IFIT1P09914 478 aaKnown RBP12.72□□□□□ -0.37
LSM3-201ENST00000306024 PARP3Q9Y6F1 533 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms