RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 BOLA2Q9H3K6 86 aa13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 FRMD4BQ9Y2L6 1034 aa13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 ATP5DP30049 168 aa13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 ARHGAP24Q8N264 748 aa13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 F13A1P00488 732 aa13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 KSR1Q8IVT5 923 aa13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 RBM42Q9BTD8 480 aaKnown RBP13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 GMNNO75496 209 aa13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 ERCC6LQ2NKX8 1250 aa13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 ATP2A2P16615 1042 aaKnown RBP13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 CCT6AP40227 531 aaKnown RBP13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 CCDC42Q96M95 316 aa13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 PLVAPQ9BX97 442 aa13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 MRPL46Q9H2W6 279 aaKnown RBP13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 SH3BGRP55822 239 aaPredicted RBP13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 TMEM266Q2M3C6 531 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 PALMDQ9NP74 551 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 ATP2A1O14983 1001 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 SND1Q7KZF4 910 aaKnown RBP eCLIP13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 RAD54L2Q9Y4B4 1467 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 MYH10P35580 1976 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 SSH1Q8WYL5 1049 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 CCDC65Q8IXS2 484 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 TRIM31Q9BZY9 425 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 STRN4Q9NRL3 753 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 SDCCAG8Q86SQ7 713 aaPredicted RBP13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 IFT20Q8IY31 132 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 GOLGA8AA7E2F4 631 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 GUCY2FP51841 1108 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 KANK3Q6NY19 840 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 USP6NLQ92738 828 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 SPAG5Q96R06 1193 aa13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 ORC3Q9UBD5 711 aaPredicted RBP13.24□□□□□ -0.29
SHROOM3-201ENST00000296043 AKR1B15C9JRZ8 316 aaPredicted RBP13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 RPGRIP1LQ68CZ1 1315 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 CETN1Q12798 172 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 BMP2KLQ5H9B9 411 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 TTC22Q5TAA0 569 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 USP16Q9Y5T5 823 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 PPFIA2O75334 1257 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 IDH1O75874 414 aaKnown RBP13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 EVA1CP58658 441 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 ZKSCAN8Q15776 578 aaPredicted RBP13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 ZGPATQ8N5A5 531 aaKnown RBP13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 AIDAQ96BJ3 306 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 VCX3AQ9NNX9 186 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 KIF6Q6ZMV9 814 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 TRIM35Q9UPQ4 493 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 SATB1Q01826 763 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 TSC22D3Q99576 134 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 ZSCAN25Q6NSZ9 544 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 CAPS2Q9BXY5 557 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 MTUS1Q9ULD2 1270 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 PHLDB3Q6NSJ2 640 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 PRPF31Q8WWY3 499 aaKnown RBP13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 LRRC2Q9BYS8 371 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 RASSF2P50749 326 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 YY1AP1Q9H869 796 aa13.23□□□□□ -0.29
SHROOM3-201ENST00000296043 STX17P56962 302 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 NUB1Q9Y5A7 615 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 IFT88Q13099 833 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 MICU3Q86XE3 530 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 EFCAB13Q8IY85 973 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 SYNCQ9H7C4 482 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 SAMM50Q9Y512 469 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 A0A087WZG4 1122 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 A6NNZ2 444 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 TUBB8Q3ZCM7 444 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 CCDC194A0A1B0GVG4 234 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 CUX1P39880 1505 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 RARSP54136 660 aaKnown RBP13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 TEX11Q8IYF3 940 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 RMND1Q9NWS8 449 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 I3L4J1 428 aa13.22□□□□□ -0.29
SHROOM3-201ENST00000296043 ARHGAP42A6NI28 874 aa13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 PRPHP41219 470 aa13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 CTNND2Q9UQB3 1225 aa13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 GLRX3O76003 335 aaKnown RBP13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 MGEA5O60502 916 aa13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 STAT6P42226 847 aa13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 LMBR1Q8WVP7 490 aa13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 MX2P20592 715 aa13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 KCNG4Q8TDN1 519 aa13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 UTP11Q9Y3A2 253 aaKnown RBP13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 WIZO95785 1651 aa13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 SYCP3Q8IZU3 236 aa13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 JAKMIP2Q96AA8 810 aa13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 AKAP2Q9Y2D5 859 aa13.21□□□□□ -0.29
SHROOM3-201ENST00000296043 SEC31AO94979 1220 aaKnown RBP13.21□□□□□ -0.3
SHROOM3-201ENST00000296043 IRX5P78411 483 aaPredicted RBP13.21□□□□□ -0.3
SHROOM3-201ENST00000296043 SNX21Q969T3 373 aa13.21□□□□□ -0.3
SHROOM3-201ENST00000296043 CALML4Q96GE6 196 aa13.21□□□□□ -0.3
SHROOM3-201ENST00000296043 PFDN4Q9NQP4 134 aa13.21□□□□□ -0.3
SHROOM3-201ENST00000296043 TTF1Q15361 905 aaPredicted RBP13.21□□□□□ -0.3
SHROOM3-201ENST00000296043 SUFUQ9UMX1 484 aa13.21□□□□□ -0.3
SHROOM3-201ENST00000296043 MYL6BP14649 208 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 INF2Q27J81 1249 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 ARMC9Q7Z3E5 817 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 ZSCAN16Q9H4T2 348 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms